Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.26953 Avicennia marina HOM05D006277 ORTHO05D007673 2.0e-215 752.3 406 100.0
Migut.F00123 Erythranthe guttata HOM05D006277 ORTHO05D007673 1.9e-141 506.5 421 69.4
SalBow4G0692 Salvia bowleyana HOM05D006277 ORTHO05D007673 6.7e-123 444.9 424 63.2
SGA_v2.0_scaffold18G08496 Striga asiatica HOM05D006277 ORTHO05D007673 3.4e-119 432.6 424 62.7
Dinv29192 Davidia involucrata HOM05D006277 ORTHO05D007673 3.8e-94 349.4 422 54.5
GSVIVG01038680001 Vitis vinifera HOM05D006277 ORTHO05D007673 4.4e-90 335.9 414 53.4
Thecc.03G212000 Theobroma cacao HOM05D006277 ORTHO05D007673 1.4e-88 330.9 421 53.9
Gohir.A08G106400 Gossypium hirsutum HOM05D006277 ORTHO05D007673 1.2e-87 327.8 414 53.9
Oeu010718.2 Olea europaea HOM05D006277 ORTHO05D007673 1.5e-85 320.9 505 45.9
Gorai.004G126300 Gossypium raimondii HOM05D006277 ORTHO05D007673 7.2e-85 318.5 413 52.5
QL09p006002 Quercus lobata HOM05D006277 ORTHO05D007673 1.6e-84 317.4 442 49.1
PGSC0003DMG400000548 Solanum tuberosum HOM05D006277 ORTHO05D007673 2.1e-84 317.0 429 50.8
CAN.G303.58 Capsicum annuum HOM05D006277 ORTHO05D007673 3.0e-83 313.2 427 51.8
COL.COLO4_14399 Corchorus olitorius HOM05D006277 ORTHO05D007673 1.3e-81 307.8 419 51.6
Glyma.06G139100 Glycine max HOM05D006277 ORTHO05D007673 1.3e-81 307.8 416 51.0
Sopen03g027470 Solanum pennellii HOM05D006277 ORTHO05D007673 2.8e-81 306.6 429 49.4
Duzib205G1288 Durio zibethinus HOM05D006277 ORTHO05D007673 6.3e-81 305.4 416 52.6
vmacro06474 Vaccinium macrocarpon HOM05D006277 ORTHO05D007673 1.1e-80 304.7 466 46.6
Potri.012G004700 Populus trichocarpa HOM05D006277 ORTHO05D007673 1.4e-80 304.3 415 52.5
Sabra12G0006800 Salix brachista HOM05D006277 ORTHO05D007673 7.2e-77 292.0 440 48.4
Atru.chr12.2501 Acer truncatum HOM05D006277 ORTHO05D007673 9.4e-77 291.6 430 48.1
Manes.18G108300 Manihot esculenta HOM05D006277 ORTHO05D007673 1.6e-76 290.8 425 49.6
Sc19g0000370 Simmondsia chinensis HOM05D006277 ORTHO05D007673 1.6e-76 290.8 430 48.8
Lalb_Chr23g0272041 Lupinus albus HOM05D006277 ORTHO05D007673 2.7e-76 290.0 431 47.3
Sabra12G0000500 Salix brachista HOM05D006277 ORTHO05D007673 8.0e-76 288.5 440 48.4
Phvul.009G040200 Phaseolus vulgaris HOM05D006277 ORTHO05D007673 1.0e-75 288.1 420 47.6
MD01G1231400 Malus domestica HOM05D006277 ORTHO05D007673 4.0e-75 286.2 302 58.9
Rhsim03G0218400 Rhododendron simsii HOM05D006277 ORTHO05D007673 5.2e-75 285.8 446 46.0
Haze_00334 Corylus avellana HOM05D006277 ORTHO05D007673 8.8e-75 285.0 503 43.3
Solyc03g079950.4 Solanum lycopersicum HOM05D006277 ORTHO05D007673 2.0e-74 283.9 426 47.9
Atru.chr12.2525 Acer truncatum HOM05D006277 ORTHO05D007673 2.6e-74 283.5 412 48.8
CiPaw.06G038300 Carya illinoinensis HOM05D006277 ORTHO05D007673 7.5e-74 282.0 361 55.4
Lj1g0014471 Lotus japonicus HOM05D006277 ORTHO05D007673 7.5e-74 282.0 440 46.8
Nitab4.5_0007121g0020 Nicotiana tabacum HOM05D006277 ORTHO05D007673 1.7e-73 280.8 385 50.4
EL10Ac3g05132 Beta vulgaris HOM05D006277 ORTHO05D007673 2.8e-73 280.0 416 48.3
Hund09753 Selenicereus undatus HOM05D006277 ORTHO05D007673 2.4e-72 276.9 382 47.6
RcHm_v2.0_Chr1g0383301 Rosa chinensis HOM05D006277 ORTHO05D007673 5.4e-72 275.8 441 48.8
Medtr3g093330 Medicago truncatula HOM05D006277 ORTHO05D007673 9.1e-72 275.0 423 46.8
Peaxi162Scf01026g00268 Petunia axillaris HOM05D006277 ORTHO05D007673 1.6e-71 274.2 417 48.7
VMungo1309G1324 Vigna mungo HOM05D006277 ORTHO05D007673 2.0e-71 273.9 425 46.8
Cc02_g00600 Coffea canephora HOM05D006277 ORTHO05D007673 4.5e-71 272.7 421 48.5
arahy.Tifrunner.gnm1.ann1.NYS2P6 Arachis hypogaea HOM05D006277 ORTHO05D007673 2.3e-70 270.4 434 46.5
CANSAT21G1902 Cannabis sativa HOM05D006277 ORTHO05D007673 6.6e-70 268.9 418 47.6
arahy.Tifrunner.gnm1.ann1.YJ5L14 Arachis hypogaea HOM05D006277 ORTHO05D007673 8.6e-70 268.5 435 46.4
arahy.Tifrunner.gnm1.ann1.VE49IY Arachis hypogaea HOM05D006277 ORTHO05D007673 1.9e-69 267.3 436 46.1
CSS0047728 Camellia sinensis var. sinensis HOM05D006277 ORTHO05D007673 2.5e-69 266.9 436 46.1
Psat6g243000 Pisum sativum HOM05D006277 ORTHO05D007673 4.2e-69 266.2 416 47.4
TPR.G35912 Trifolium pratense HOM05D006277 ORTHO05D007673 7.2e-69 265.4 437 45.8
AUR62005949 Chenopodium quinoa HOM05D006277 ORTHO05D007673 2.8e-68 263.5 410 47.6
Ca_16838_v3 Cicer arietinum L. HOM05D006277 ORTHO05D007673 2.8e-68 263.5 438 46.3
FAN10G3443 Fragaria x ananassa HOM05D006277 ORTHO05D007673 6.1e-68 262.3 427 47.5
TAR626G1328 Trochodendron aralioides HOM05D006277 ORTHO05D007673 1.4e-67 261.2 301 53.8
Glyma.04G225700 Glycine max HOM05D006277 ORTHO05D007673 1.8e-67 260.8 412 47.1
MD07G1303400 Malus domestica HOM05D006277 ORTHO05D007673 2.3e-67 260.4 419 45.6
FAN10G1913 Fragaria x ananassa HOM05D006277 ORTHO05D007673 5.2e-67 259.2 438 46.6
Nitab4.5_0000021g0190 Nicotiana tabacum HOM05D006277 ORTHO05D007673 8.9e-67 258.5 352 52.0
FvH4_7g33320 Fragaria vesca HOM05D006277 ORTHO05D007673 7.5e-66 255.4 427 46.8
FAN01G0327 Fragaria x ananassa HOM05D006277 ORTHO05D007673 1.7e-65 254.2 428 46.7
THA.LOC104803317 Tarenaya hassleriana HOM05D006277 ORTHO05D007673 3.7e-65 253.1 416 47.4
Thhalv10004336m.g Eutrema salsugineum HOM05D006277 ORTHO05D007673 6.3e-65 252.3 423 45.9
Prupe.2G322100 Prunus persica HOM05D006277 ORTHO05D007673 6.3e-65 252.3 300 56.7
TWI59G0797 Tripterygium wilfordii HOM05D006277 ORTHO05D007673 1.9e-61 240.7 299 52.8
C07p43080 Brassica napus HOM05D006277 ORTHO05D007673 4.7e-60 236.1 441 42.4
LjContig00312_ERROPOS870357g0003049 Lotus japonicus HOM05D006277 ORTHO05D007673 6.1e-60 235.7 300 51.7
Sed0010003 Sechium edule HOM05D006277 ORTHO05D007673 8.0e-60 235.3 423 44.0
BolC7t44835H Brassica oleracea HOM05D006277 ORTHO05D007673 1.4e-59 234.6 441 42.2
PGR142G2769 Punica granatum HOM05D006277 ORTHO05D007673 1.4e-59 234.6 429 44.1
BcaNung02006 Brassica carinata HOM05D006277 ORTHO05D007673 1.8e-59 234.2 421 43.7
AUR62028116 Chenopodium quinoa HOM05D006277 ORTHO05D007673 2.3e-59 233.8 412 44.9
Ciclev10005393m.g Citrus clementina HOM05D006277 ORTHO05D007673 2.3e-59 233.8 298 51.7
Cpa.g.sc3.186 Carica papaya HOM05D006277 ORTHO05D007673 4.0e-59 233.0 428 44.2
HanXRQChr04g0117941 Helianthus annuus HOM05D006277 ORTHO05D007673 1.2e-58 231.5 208 66.3
Cfa016128 Carpinus fangiana HOM05D006277 ORTHO05D007673 2.6e-58 230.3 327 46.2
ClCG07G009750 Citrullus lanatus HOM05D006277 ORTHO05D007673 1.3e-57 228.0 427 44.3
Sp2g22750 Schrenkiella parvula HOM05D006277 ORTHO05D007673 1.3e-57 228.0 430 43.7
DCAR_010558 Daucus carota HOM05D006277 ORTHO05D007673 1.9e-56 224.2 428 43.5
Carub.0006s2249 Capsella rubella HOM05D006277 ORTHO05D007673 3.2e-56 223.4 424 41.5
Aa31LG11G3890 Aethionema arabicum HOM05D006277 ORTHO05D007673 4.1e-56 223.0 438 40.4
Lsat_1_v5_gn_2_135460 Lactuca sativa HOM05D006277 ORTHO05D007673 1.2e-55 221.5 357 45.4
PSO170G0956 Papaver somniferum HOM05D006277 ORTHO05D007673 2.0e-55 220.7 192 64.6
CsaV3_2G019700 Cucumis sativus L. HOM05D006277 ORTHO05D007673 1.3e-54 218.0 424 43.2
Os02g0147700 Oryza sativa ssp. japonica HOM05D006277 ORTHO05D007673 3.0e-54 216.9 375 42.1
ECA238G0260 Erigeron canadensis HOM05D006277 ORTHO05D007673 3.9e-54 216.5 283 50.9
FAN03G1266 Fragaria x ananassa HOM05D006277 ORTHO05D007673 1.5e-53 214.5 354 46.6
AUR62030650 Chenopodium quinoa HOM05D006277 ORTHO05D007673 1.9e-53 214.2 268 53.0
Eucgr.K00479 Eucalyptus grandis HOM05D006277 ORTHO05D007673 1.9e-53 214.2 371 43.7
Gohir.D08G117800 Gossypium hirsutum HOM05D006277 ORTHO05D007673 1.9e-53 214.2 307 47.2
PSO063G0207 Papaver somniferum HOM05D006277 ORTHO05D007673 1.9e-53 214.2 399 41.9
HPP92_017116 Vanilla planifolia HOM05D006277 ORTHO05D007673 4.3e-53 213.0 311 46.0
arahy.Tifrunner.gnm1.ann1.T9XRV5 Arachis hypogaea HOM05D006277 ORTHO05D007673 7.3e-53 212.2 265 52.5
PSO384G3009 Papaver somniferum HOM05D006277 ORTHO05D007673 3.1e-51 206.8 372 42.2
A06p35430 Brassica napus HOM05D006277 ORTHO05D007673 4.0e-51 206.5 432 40.5
MBI16_g10337_MAGBIO Magnolia biondii HOM05D006277 ORTHO05D007673 8.9e-51 205.3 319 47.3
Os02g0147100 Oryza sativa ssp. japonica HOM05D006277 ORTHO05D007673 3.4e-50 203.4 359 41.2
BraA06t26466Z Brassica rapa HOM05D006277 ORTHO05D007673 7.5e-50 202.2 442 39.8
CARHR188820 Cardamine hirsuta HOM05D006277 ORTHO05D007673 7.5e-50 202.2 415 41.4
Actinidia08720 Actinidia chinensis HOM05D006277 ORTHO05D007673 9.8e-50 201.8 312 45.5
Ah.13g071040 Amaranthus hybridus HOM05D006277 ORTHO05D008078 9.8e-50 201.8 405 42.2
HPP92_017121 Vanilla planifolia HOM05D006277 ORTHO05D007673 3.7e-49 199.9 262 46.9
AL6G36240 Arabidopsis lyrata HOM05D006277 ORTHO05D007673 6.4e-49 199.1 474 38.0
MELO3C023191.2 Cucumis melo HOM05D006277 ORTHO05D007673 7.0e-48 195.7 366 45.4
AT5G24630 Arabidopsis thaliana HOM05D006277 ORTHO05D007673 2.1e-47 194.1 457 37.6
Zm00001eb232230 Zea mays HOM05D006277 ORTHO05D007673 5.1e-46 189.5 320 45.3
CDE02G3091 Ceratophyllum demersum HOM05D006277 ORTHO05D007673 2.1e-44 184.1 292 45.9
Aqoxy7G02781 Aquilegia oxysepala HOM05D006277 ORTHO05D007673 6.2e-44 182.6 356 42.1
BcaNung01248 Brassica carinata HOM05D006277 ORTHO05D007673 1.4e-43 181.4 420 39.3
SEGI_26440 Sequoiadendron giganteum HOM05D006277 ORTHO05D007673 3.1e-43 180.3 413 39.0
ATR0626G063 Amborella trichopoda HOM05D006277 ORTHO05D007673 4.0e-43 179.9 293 44.0
arahy.Tifrunner.gnm1.ann1.Z5WHM0 Arachis hypogaea HOM05D006277 ORTHO05D007673 1.3e-41 174.9 393 39.7
PSO384G0555 Papaver somniferum HOM05D006277 ORTHO05D007673 4.9e-41 172.9 153 62.7
Nn7g37003 Nelumbo nucifera HOM05D006277 ORTHO05D007673 5.1e-38 162.9 211 46.4
BraA09t36286Z Brassica rapa HOM05D000010 ORTHO05D000063 6.4e-33 146.0 224 45.5
BolC9t53629H Brassica oleracea HOM05D003313 ORTHO05D004217 2.4e-32 144.1 175 52.6
A09p06430 Brassica napus HOM05D000010 ORTHO05D000063 7.3e-29 132.5 203 46.3
C09p07160 Brassica napus HOM05D000010 ORTHO05D000063 1.6e-28 131.3 383 36.6
Pp3c7_3940 Physcomitrium patens HOM05D006277 ORTHO05D007673 4.8e-28 129.8 229 39.7
Pp3c11_21910 Physcomitrium patens HOM05D006277 ORTHO05D007673 1.3e-25 121.7 223 39.9
Mapoly0143s0029 Marchantia polymorpha HOM05D006277 ORTHO05D007673 6.4e-25 119.4 449 29.0
CDE06G1557 Ceratophyllum demersum HOM05D006277 ORTHO05D007673 2.1e-23 114.4 201 42.3
CBR_g39579 Chara braunii HOM05D000601 ORTHO05D007673 4.6e-23 113.2 110 50.0
Potri.015G000701 Populus trichocarpa HOM05D006277 ORTHO05D007673 2.5e-21 107.5 107 56.1
CBR_g24064 Chara braunii HOM05D006277 ORTHO05D007673 9.6e-21 105.5 230 38.3
CBR_g31160 Chara braunii HOM05D006277 ORTHO05D007673 8.1e-20 102.4 144 43.8
AagrBONN_evm.TU.Sc2ySwM_362.1883 Anthoceros agrestis HOM05D006277 ORTHO05D007673 1.5e-18 98.2 434 30.4
Hma1.2p1_1235F.1_g269240 Hydrangea macrophylla HOM05D006277 ORTHO05D007673 2.7e-15 87.4 191 37.7
CiPaw.10G123600 Carya illinoinensis HOM05D006277 ORTHO05D007673 7.4e-13 79.3 66 68.2
Nn5g26949 Nelumbo nucifera HOM05D006277 ORTHO05D007673 6.2e-12 76.3 73 53.4
MCO04G384 Micromonas commoda HOM05D006277 ORTHO05D007673 1.2e-10 72.0 127 35.4


User provided reference genes

Program Settings