Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.26129 Avicennia marina HOM05D003612 ORTHO05D004323 3.9e-159 564.7 271 100.0
Migut.K00098 Erythranthe guttata HOM05D003612 ORTHO05D004323 1.2e-112 410.2 269 70.3
Migut.B00971 Erythranthe guttata HOM05D003612 ORTHO05D004323 2.4e-108 396.0 253 71.1
Oeu008170.1 Olea europaea HOM05D003612 ORTHO05D004323 4.1e-92 342.0 271 58.3
Oeu023123.1 Olea europaea HOM05D003612 ORTHO05D004323 1.0e-90 337.4 252 61.9
SalBow1G2865 Salvia bowleyana HOM05D003612 ORTHO05D004323 8.5e-90 334.3 251 64.1
SGA_v2.0_scaffold94G28492 Striga asiatica HOM05D003612 ORTHO05D004323 8.5e-90 334.3 262 58.0
Dinv02797 Davidia involucrata HOM05D003612 ORTHO05D004323 4.2e-81 305.4 252 57.5
Lj2A386T88 Lonicera japonica HOM05D003612 ORTHO05D004323 3.6e-80 302.4 252 56.0
Cc04_g15140 Coffea canephora HOM05D003612 ORTHO05D004323 8.8e-79 297.7 252 56.0
Nitab4.5_0000082g0220 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.7e-77 293.5 265 56.2
Nitab4.5_0000082g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.4e-76 290.4 264 55.3
CAN.G641.26 Capsicum annuum HOM05D003612 ORTHO05D004323 5.3e-76 288.5 264 54.5
PGSC0003DMG400008168 Solanum tuberosum HOM05D003612 ORTHO05D004323 2.0e-75 286.6 265 55.1
Nitab4.5_0000912g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 4.5e-75 285.4 262 54.2
Nitab4.5_0010316g0020 Nicotiana tabacum HOM05D003612 ORTHO05D004323 5.9e-75 285.0 264 54.9
Sopen10g029960 Solanum pennellii HOM05D003612 ORTHO05D004323 7.7e-75 284.6 254 55.5
Cc06_g17860 Coffea canephora HOM05D003612 ORTHO05D004323 2.2e-74 283.1 255 55.3
Solyc10g079310.2 Solanum lycopersicum HOM05D003612 ORTHO05D004323 2.9e-74 282.7 254 55.1
CSS0036075 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 3.8e-74 282.3 252 53.6
Dinv39651 Davidia involucrata HOM05D003612 ORTHO05D004323 4.2e-73 278.9 253 53.8
Actinidia22794 Actinidia chinensis HOM05D003612 ORTHO05D004323 5.5e-73 278.5 250 53.2
Nitab4.5_0004416g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 2.3e-71 273.1 248 54.0
Peaxi162Scf00059g01812 Petunia axillaris HOM05D003612 ORTHO05D004323 1.2e-70 270.8 266 51.9
unitig_52.g17667 Utricularia gibba HOM05D003612 ORTHO05D004323 1.2e-70 270.8 258 50.8
Rhsim04G0105800 Rhododendron simsii HOM05D003612 ORTHO05D004323 1.8e-68 263.5 252 50.8
vmacro09060 Vaccinium macrocarpon HOM05D003612 ORTHO05D004323 4.1e-68 262.3 252 51.6
Ciclev10005938m.g Citrus clementina HOM05D003612 ORTHO05D004323 9.1e-68 261.2 268 52.2
DCAR_030722 Daucus carota HOM05D003612 ORTHO05D004323 9.1e-68 261.2 253 51.0
Hund23474 Selenicereus undatus HOM05D003612 ORTHO05D004323 1.2e-67 260.8 252 48.8
GSVIVG01033242001 Vitis vinifera HOM05D003612 ORTHO05D004323 3.5e-67 259.2 256 48.8
ClCG04G006280 Citrullus lanatus HOM05D003612 ORTHO05D004323 2.2e-66 256.5 255 48.6
Gorai.002G227800 Gossypium raimondii HOM05D003612 ORTHO05D004323 1.9e-65 253.4 257 49.0
Gohir.A01G194000 Gossypium hirsutum HOM05D003612 ORTHO05D004323 4.2e-65 252.3 257 49.8
MELO3C025231.2 Cucumis melo HOM05D003612 ORTHO05D004323 5.5e-65 251.9 256 48.0
PGR004G2683 Punica granatum HOM05D003612 ORTHO05D004323 7.2e-65 251.5 256 49.2
Manes.04G104200 Manihot esculenta HOM05D003612 ORTHO05D004323 2.1e-64 250.0 255 47.5
Potri.017G142200 Populus trichocarpa HOM05D003612 ORTHO05D004323 2.1e-64 250.0 257 51.4
CsaV3_4G027280 Cucumis sativus L. HOM05D003612 ORTHO05D004323 3.6e-64 249.2 256 48.0
TWI53G1732 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 3.6e-64 249.2 259 49.4
TWI74G0690 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 4.7e-64 248.8 244 50.8
MBI16_g21161_MAGBIO Magnolia biondii HOM05D003612 ORTHO05D004323 1.5e-62 243.8 255 48.2
Hund15698 Selenicereus undatus HOM05D003612 ORTHO05D004323 1.5e-62 243.8 253 48.2
Sabra17G0119100 Salix brachista HOM05D003612 ORTHO05D004323 2.6e-62 243.0 263 47.9
BcaC02g09930 Brassica carinata HOM05D003612 ORTHO05D004323 4.4e-62 242.3 256 46.9
C04p35070 Brassica napus HOM05D003612 ORTHO05D004323 4.4e-62 242.3 256 46.9
BolC4t25063H Brassica oleracea HOM05D003612 ORTHO05D004323 4.4e-62 242.3 256 46.9
CARHR167560 Cardamine hirsuta HOM05D003612 ORTHO05D004323 5.7e-62 241.9 258 46.9
AL5G38900 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 9.8e-62 241.1 255 47.8
BraA04t16040Z Brassica rapa HOM05D003612 ORTHO05D004323 1.3e-61 240.7 258 47.7
Eucgr.A02322 Eucalyptus grandis HOM05D003612 ORTHO05D004323 1.7e-61 240.4 265 47.5
Cpa.g.sc182.7 Carica papaya HOM05D003612 ORTHO05D004323 3.7e-61 239.2 242 49.2
Sed0024079 Sechium edule HOM05D003612 ORTHO05D004323 4.8e-61 238.8 258 46.9
TPR.G18234 Trifolium pratense HOM05D003612 ORTHO05D004323 6.3e-61 238.4 267 44.6
Eucgr.B02734 Eucalyptus grandis HOM05D003612 ORTHO05D004323 1.1e-60 237.7 265 47.2
Psat3g074360 Pisum sativum HOM05D003612 ORTHO05D004323 1.4e-60 237.3 267 44.9
TAR369G0285 Trochodendron aralioides HOM05D003612 ORTHO05D004323 1.4e-60 237.3 243 48.6
AT3G57360 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 1.8e-60 236.9 251 46.2
Sp5g05240 Schrenkiella parvula HOM05D003612 ORTHO05D004323 1.8e-60 236.9 261 46.0
TPR.G6202 Trifolium pratense HOM05D003612 ORTHO05D004323 2.4e-60 236.5 259 47.1
QL11p026785 Quercus lobata HOM05D003612 ORTHO05D004323 3.1e-60 236.1 258 47.7
A09p50260 Brassica napus HOM05D003612 ORTHO05D004323 4.1e-60 235.7 258 46.5
BraA09t40476Z Brassica rapa HOM05D003612 ORTHO05D004323 4.1e-60 235.7 258 46.5
QL07p002913 Quercus lobata HOM05D003612 ORTHO05D004323 7.0e-60 235.0 256 48.0
A04p03190 Brassica napus HOM05D003612 ORTHO05D004323 9.1e-60 234.6 278 44.2
Lj1g0003709 Lotus japonicus HOM05D003612 ORTHO05D004323 1.2e-59 234.2 260 45.4
Carub.0005s2421 Capsella rubella HOM05D003612 ORTHO05D004323 1.6e-59 233.8 260 45.4
THA.LOC104802043 Tarenaya hassleriana HOM05D003612 ORTHO05D004323 3.5e-59 232.6 244 48.0
Aa31LG10G12210 Aethionema arabicum HOM05D000708 ORTHO05D004323 5.9e-59 231.9 247 44.9
Aa31LG1G13790 Aethionema arabicum HOM05D003612 ORTHO05D004323 5.9e-59 231.9 247 46.6
VMungo1309G0648 Vigna mungo HOM05D003612 ORTHO05D004323 5.9e-59 231.9 264 44.3
C08p32750 Brassica napus HOM05D003612 ORTHO05D004323 5.0e-58 228.8 258 45.3
BolC8t50886H Brassica oleracea HOM05D003612 ORTHO05D004323 5.0e-58 228.8 258 45.3
Lsat_1_v5_gn_7_11501 Lactuca sativa HOM05D000048 ORTHO05D000436 5.0e-58 228.8 227 49.3
CiPaw.09G039700 Carya illinoinensis HOM05D003612 ORTHO05D004323 1.1e-57 227.6 266 44.0
Medtr8g090105 Medicago truncatula HOM05D003612 ORTHO05D004323 1.1e-57 227.6 243 46.1
CANSAT80G2682 Cannabis sativa HOM05D003612 ORTHO05D004323 1.5e-57 227.3 256 42.6
Carub.0001s3481 Capsella rubella HOM05D003612 ORTHO05D004323 1.9e-57 226.9 255 44.3
Thhalv10006455m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 1.9e-57 226.9 256 45.7
Actinidia17229 Actinidia chinensis HOM05D003612 ORTHO05D004323 3.3e-57 226.1 234 47.9
Thecc.05G151100 Theobroma cacao HOM05D003612 ORTHO05D004323 4.2e-57 225.7 213 52.6
HanXRQChr04g0113101 Helianthus annuus HOM05D003612 ORTHO05D004323 9.5e-57 224.6 221 50.2
Sopen03g026320 Solanum pennellii HOM05D003612 ORTHO05D004323 9.5e-57 224.6 203 52.7
COL.COLO4_19254 Corchorus olitorius HOM05D003612 ORTHO05D004323 1.2e-56 224.2 273 44.3
AL3G11670 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 4.7e-56 222.2 259 44.8
COL.COLO4_22302 Corchorus olitorius HOM05D003612 ORTHO05D004323 4.7e-56 222.2 257 46.3
Aqoxy7G03834 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 8.0e-56 221.5 262 45.4
CSS0050265 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 8.0e-56 221.5 201 51.2
Cfa016791 Carpinus fangiana HOM05D003612 ORTHO05D004323 1.4e-55 220.7 257 45.1
Prupe.7G055000 Prunus persica HOM05D003612 ORTHO05D004323 4.0e-55 219.2 268 44.0
arahy.Tifrunner.gnm1.ann1.GM1CB9 Arachis hypogaea HOM05D003612 ORTHO05D004323 5.2e-55 218.8 245 46.5
Dinv02795 Davidia involucrata HOM05D003612 ORTHO05D004323 6.8e-55 218.4 194 53.6
Lj6g0010730 Lotus japonicus HOM05D003612 ORTHO05D004323 6.8e-55 218.4 231 46.8
Aqoxy7G03372 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 1.2e-54 217.6 242 45.5
FAN02G1760 Fragaria x ananassa HOM05D003612 ORTHO05D004323 1.2e-54 217.6 253 43.9
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 1.5e-54 217.2 253 43.5
SHI13547 Sapria himalayana HOM05D003612 ORTHO05D004323 1.5e-54 217.2 253 46.6
Os09g0504800 Oryza sativa ssp. japonica HOM05D003612 ORTHO05D004323 3.4e-54 216.1 238 45.0
arahy.Tifrunner.gnm1.ann1.65NHSX Arachis hypogaea HOM05D003612 ORTHO05D004323 4.4e-54 215.7 267 44.2
Psat7g055720 Pisum sativum HOM05D003612 ORTHO05D004323 7.5e-54 214.9 253 42.7
RcHm_v2.0_Chr3g0483371 Rosa chinensis HOM05D003612 ORTHO05D004323 1.3e-53 214.2 266 44.0
SGA_v2.0_scaffold1G00588 Striga asiatica HOM05D003612 ORTHO05D004323 2.2e-53 213.4 232 50.0
VMungo1383G3573 Vigna mungo HOM05D003612 ORTHO05D004323 4.9e-53 212.2 248 44.4
MD12G1080400 Malus domestica HOM05D003612 ORTHO05D004323 6.3e-53 211.8 261 43.3
Ca_08432_v3 Cicer arietinum L. HOM05D003612 ORTHO05D004323 1.1e-52 211.1 251 42.6
Nn1g01643 Nelumbo nucifera HOM05D003612 ORTHO05D004323 1.8e-52 210.3 252 46.0
PSO210G3983 Papaver somniferum HOM05D003612 ORTHO05D004323 3.1e-52 209.5 250 46.4
Thhalv10009639m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 4.1e-52 209.1 260 43.8
Zm00001eb102310 Zea mays HOM05D003612 ORTHO05D004323 4.1e-52 209.1 241 44.0
BcaB02g08320 Brassica carinata HOM05D003612 ORTHO05D004323 7.0e-52 208.4 222 45.9
PSO210G2319 Papaver somniferum HOM05D003612 ORTHO05D004323 1.2e-51 207.6 262 43.5
PSO648G0079 Papaver somniferum HOM05D003612 ORTHO05D004323 1.6e-51 207.2 258 45.3
AUR62029731 Chenopodium quinoa HOM05D003612 ORTHO05D004323 3.5e-51 206.1 274 40.1
Nn8g39441 Nelumbo nucifera HOM05D003612 ORTHO05D004323 3.5e-51 206.1 235 45.5
ATR0829G008 Amborella trichopoda HOM05D003612 ORTHO05D004323 4.5e-51 205.7 300 38.7
Thhalv10009908m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 4.5e-51 205.7 262 43.1
Phvul.007G088100 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 5.9e-51 205.3 213 47.4
FvH4_6g24380 Fragaria vesca HOM05D003612 ORTHO05D004323 1.0e-50 204.5 239 43.5
ECA236G0894 Erigeron canadensis HOM05D003612 ORTHO05D004323 1.3e-50 204.1 231 46.3
HPP92_020032 Vanilla planifolia HOM05D003612 ORTHO05D004323 1.3e-50 204.1 213 46.0
PGSC0003DMG400011936 Solanum tuberosum HOM05D003612 ORTHO05D004323 2.3e-50 203.4 255 45.1
BcaC07g40390 Brassica carinata HOM05D003612 ORTHO05D004323 3.8e-50 202.6 213 46.5
Lalb_Chr20g0110641 Lupinus albus HOM05D003612 ORTHO05D004323 8.6e-50 201.4 277 41.9
EL10Ac6g13255 Beta vulgaris HOM05D003612 ORTHO05D004323 1.1e-49 201.1 276 40.9
PSO339G0745 Papaver somniferum HOM05D003612 ORTHO05D004323 3.3e-49 199.5 237 45.1
Thhalv10008553m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 4.3e-49 199.1 214 45.3
AT3G02370 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 5.6e-49 198.7 214 47.7
Phvul.008G158112 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 9.5e-49 198.0 208 47.6
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 6.1e-48 195.3 244 42.6
AUR62032829 Chenopodium quinoa HOM05D003612 ORTHO05D004323 1.8e-47 193.7 279 38.7
ClCG10G015700 Citrullus lanatus HOM05D003612 ORTHO05D004323 1.8e-47 193.7 230 43.0
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 1.2e-46 191.0 222 43.7
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 1.5e-46 190.7 244 42.2
BolC8t50888H Brassica oleracea HOM05D003612 ORTHO05D004323 2.0e-46 190.3 257 40.1
Haze_19817 Corylus avellana HOM05D003612 ORTHO05D004323 4.4e-46 189.1 263 40.7
Peaxi162Scf00244g00019 Petunia axillaris HOM05D003612 ORTHO05D004323 9.8e-46 188.0 254 41.7
Haze_19820 Corylus avellana HOM05D003612 ORTHO05D004323 1.3e-45 187.6 262 40.8
Sopen03g026330 Solanum pennellii HOM05D003612 ORTHO05D004323 4.9e-45 185.7 298 38.6
Ah.03g134750 Amaranthus hybridus HOM05D003612 ORTHO05D004323 1.9e-44 183.7 276 39.5
Glyma.07G129400 Glycine max HOM05D003612 ORTHO05D004323 4.1e-44 182.6 273 37.7
Prupe.5G048800 Prunus persica HOM05D003612 ORTHO05D004323 5.4e-44 182.2 216 42.1
Duzib128G0868 Durio zibethinus HOM05D003612 ORTHO05D004323 9.2e-44 181.4 180 50.0
Sc04g0007910 Simmondsia chinensis HOM05D003612 ORTHO05D004323 2.0e-43 180.3 180 48.9
AUR62005836 Chenopodium quinoa HOM05D000760 ORTHO05D004323 6.2e-40 168.7 243 39.1
PSO339G0740 Papaver somniferum HOM05D003612 ORTHO05D004323 6.2e-40 168.7 199 43.7
Lj1C1128T4 Lonicera japonica HOM05D003612 ORTHO05D004323 2.0e-38 163.7 160 48.8
CDE09G0671 Ceratophyllum demersum HOM05D003612 ORTHO05D004323 2.6e-38 163.3 223 41.3
Gohir.D01G184300 Gossypium hirsutum HOM05D003612 ORTHO05D004323 9.8e-38 161.4 181 45.3
TAR369G0664 Trochodendron aralioides HOM05D003612 ORTHO05D004323 2.9e-37 159.8 172 45.3
SMO364G0364 Selaginella moellendorffii HOM05D003612 ORTHO05D004323 1.3e-34 151.0 223 36.8
AagrBONN_evm.TU.Sc2ySwM_368.1563 Anthoceros agrestis HOM05D003612 ORTHO05D004323 9.5e-33 144.8 304 29.6
GSVIVG01033245001 Vitis vinifera HOM05D003612 ORTHO05D004323 1.2e-32 144.4 140 49.3
BcaNung07094 Brassica carinata HOM05D003612 ORTHO05D004323 2.1e-32 143.7 167 41.9
Pp3c3_37380 Physcomitrium patens HOM05D003612 ORTHO05D004323 1.4e-31 141.0 231 35.1
MD14G1076600 Malus domestica HOM05D003612 ORTHO05D004323 1.8e-31 140.6 253 35.2
CSS0020602 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 7.5e-30 135.2 181 40.9
Eucgr.A02319 Eucalyptus grandis HOM05D003612 ORTHO05D004323 9.9e-30 134.8 261 34.1
Mapoly0007s0121 Marchantia polymorpha HOM05D003612 ORTHO05D004323 1.1e-28 131.3 320 27.8
Ah.02g117470 Amaranthus hybridus HOM05D003612 ORTHO05D004323 2.4e-28 130.2 228 36.8
PSO339G6630 Papaver somniferum HOM05D003612 ORTHO05D004323 2.4e-28 130.2 224 37.9
MELO3C030712.2 Cucumis melo HOM05D003612 ORTHO05D004323 3.5e-27 126.3 130 49.2
SEGI_02185 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 1.1e-25 121.3 242 32.6
Nn2g10440 Nelumbo nucifera HOM05D003612 ORTHO05D004323 4.3e-25 119.4 114 51.8
BcaNung07092 Brassica carinata HOM05D003612 ORTHO05D004323 5.6e-25 119.0 251 31.1
C08p32770 Brassica napus HOM05D003612 ORTHO05D004323 7.3e-25 118.6 252 31.0
Nitab4.5_0001598g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.8e-23 114.0 196 35.2
Solyc03g096220.3 Solanum lycopersicum HOM05D003612 ORTHO05D004323 1.2e-22 111.3 85 58.8
PSO339G4790 Papaver somniferum HOM05D003612 ORTHO05D004323 1.9e-20 104.0 160 37.5
Glyma.19G136600 Glycine max HOM05D003612 ORTHO05D004323 4.6e-19 99.4 254 29.5
RcHm_v2.0_Chr1g0361791 Rosa chinensis HOM05D003612 ORTHO05D004323 1.7e-18 97.4 100 49.0
Eucgr.A02317 Eucalyptus grandis HOM05D003612 ORTHO05D004323 5.1e-18 95.9 81 54.3
PGSC0003DMG400013536 Solanum tuberosum HOM05D003612 ORTHO05D004323 2.5e-17 93.6 75 64.0
CBR_g2822 Chara braunii HOM05D000019 ORTHO05D000048 9.6e-17 91.7 172 32.0
Duzib093G1009 Durio zibethinus HOM05D003612 ORTHO05D004323 1.8e-15 87.4 76 51.3
Peaxi162Scf00002g03215 Petunia axillaris HOM05D003612 ORTHO05D004323 1.8e-15 87.4 134 37.3
SEGI_36865 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 3.8e-13 79.7 74 54.1
CAN.G125.23 Capsicum annuum HOM05D000107 ORTHO05D000062 5.4e-12 75.9 107 40.2
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 7.1e-12 75.5 133 36.8
Glyma.03G134401 Glycine max HOM05D003612 ORTHO05D004323 3.5e-11 73.2 70 41.4
Lj1A1127T48 Lonicera japonica HOM05D003612 ORTHO05D004323 2.8e-08 63.5 43 60.5
QL07p002858 Quercus lobata HOM05D003612 ORTHO05D004323 3.6e-08 63.2 92 38.0
Lj1A1128T58 Lonicera japonica HOM05D003612 ORTHO05D004323 5.3e-07 59.3 47 61.7


User provided reference genes

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