Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.25539 Avicennia marina HOM05D007062 ORTHO05D008941 5.3e-141 504.6 303 100.0
PGR031G1282 Punica granatum HOM05D007062 ORTHO05D008941 1.2e-79 300.8 270 75.9
SalBow6G7097 Salvia bowleyana HOM05D007062 ORTHO05D008941 3.4e-79 299.3 272 73.9
Gorai.004G200900 Gossypium raimondii HOM05D007062 ORTHO05D008941 2.0e-76 290.0 284 72.2
Migut.A00806 Erythranthe guttata HOM05D007062 ORTHO05D008941 5.6e-74 282.0 275 69.1
SGA_v2.0_scaffold120G32845 Striga asiatica HOM05D007062 ORTHO05D008941 2.2e-70 270.0 269 72.1
Os02g0643500 Oryza sativa ssp. japonica HOM05D007062 ORTHO05D008941 3.7e-70 269.2 216 84.3
Gohir.D08G190800 Gossypium hirsutum HOM05D007062 ORTHO05D008941 1.4e-69 267.3 284 68.3
Manes.01G076100 Manihot esculenta HOM05D007062 ORTHO05D008941 1.2e-68 264.2 284 68.3
CSS0040813 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 1.6e-68 263.8 279 68.1
Nitab4.5_0000993g0090 Nicotiana tabacum HOM05D007062 ORTHO05D008941 6.0e-68 261.9 273 68.5
CAN.G1217.21 Capsicum annuum HOM05D007062 ORTHO05D008941 7.8e-68 261.5 272 65.8
QL12p014002 Quercus lobata HOM05D007062 ORTHO05D008941 1.7e-67 260.4 312 50.0
Thecc.03G257500 Theobroma cacao HOM05D007062 ORTHO05D008941 2.3e-67 260.0 292 66.8
Prupe.5G075900 Prunus persica HOM05D007062 ORTHO05D008941 3.0e-67 259.6 280 66.4
CSS0025302 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 5.1e-67 258.8 285 66.7
PGSC0003DMG400004788 Solanum tuberosum HOM05D007062 ORTHO05D008941 8.6e-67 258.1 272 66.5
Solyc08g079110.4 Solanum lycopersicum HOM05D007062 ORTHO05D008941 1.5e-66 257.3 272 68.4
Sopen08g027570 Solanum pennellii HOM05D007062 ORTHO05D008941 1.5e-66 257.3 272 68.0
Nitab4.5_0005649g0010 Nicotiana tabacum HOM05D007062 ORTHO05D008941 2.5e-66 256.5 273 67.8
Actinidia02105 Actinidia chinensis HOM05D007062 ORTHO05D008941 7.3e-66 255.0 272 69.1
Potri.003G112900 Populus trichocarpa HOM05D007062 ORTHO05D008941 9.5e-66 254.6 284 63.4
Gohir.A08G172400 Gossypium hirsutum HOM05D007062 ORTHO05D008941 3.6e-65 252.7 193 88.1
Peaxi162Scf00002g00075 Petunia axillaris HOM05D007062 ORTHO05D008941 4.7e-65 252.3 272 64.3
Ciclev10021545m.g Citrus clementina HOM05D007062 ORTHO05D008941 2.4e-64 250.0 286 66.1
Cc08_g12960 Coffea canephora HOM05D007062 ORTHO05D008941 4.0e-64 249.2 272 67.3
TAR375G0275 Trochodendron aralioides HOM05D007062 ORTHO05D008941 4.0e-64 249.2 272 66.9
CiPaw.12G106400 Carya illinoinensis HOM05D007062 ORTHO05D008941 6.8e-64 248.4 283 64.0
Hund11577 Selenicereus undatus HOM05D007062 ORTHO05D008941 8.9e-64 248.1 276 68.1
GSVIVG01001267001 Vitis vinifera HOM05D007062 ORTHO05D008941 1.2e-63 247.7 267 68.2
THA.LOC104818475 Tarenaya hassleriana HOM05D007062 ORTHO05D008941 2.0e-63 246.9 289 65.4
Sed0027513 Sechium edule HOM05D007062 ORTHO05D008941 2.6e-63 246.5 271 64.9
Lsat_1_v5_gn_6_2361 Lactuca sativa HOM05D007062 ORTHO05D008941 2.9e-62 243.0 275 66.2
SMO137G0193 Selaginella moellendorffii HOM05D007062 ORTHO05D008941 2.9e-62 243.0 219 74.9
Mapoly0083s0077 Marchantia polymorpha HOM05D007062 ORTHO05D008941 8.4e-62 241.5 218 75.7
Glyma.11G030700 Glycine max HOM05D007062 ORTHO05D008941 2.4e-61 240.0 270 66.3
Phvul.002G061100 Phaseolus vulgaris HOM05D007062 ORTHO05D008941 2.4e-61 240.0 284 63.7
EL10Ac5g13006 Beta vulgaris HOM05D007062 ORTHO05D008941 3.2e-61 239.6 276 56.9
TPR.G25898 Trifolium pratense HOM05D007062 ORTHO05D008941 4.1e-61 239.2 268 65.7
Cpa.g.sc29.119 Carica papaya HOM05D007062 ORTHO05D008941 7.1e-61 238.4 274 64.6
Lj2g0026876 Lotus japonicus HOM05D007062 ORTHO05D008941 7.1e-61 238.4 275 64.4
Atru.chr9.1388 Acer truncatum HOM05D007062 ORTHO05D008941 1.3e-59 234.2 284 63.0
arahy.Tifrunner.gnm1.ann1.06MV4V Arachis hypogaea HOM05D007062 ORTHO05D008941 2.3e-59 233.4 270 64.4
arahy.Tifrunner.gnm1.ann1.FU46H2 Arachis hypogaea HOM05D007062 ORTHO05D008941 2.3e-59 233.4 270 64.4
MELO3C005562.2 Cucumis melo HOM05D007062 ORTHO05D008941 3.0e-59 233.0 280 60.0
Duzib205G0297 Durio zibethinus HOM05D007062 ORTHO05D008941 8.7e-59 231.5 285 62.8
CsaV3_5G003940 Cucumis sativus L. HOM05D007062 ORTHO05D008941 1.5e-58 230.7 278 60.4
RcHm_v2.0_Chr7g0202221 Rosa chinensis HOM05D007062 ORTHO05D008941 2.5e-58 229.9 281 61.9
Zm00001eb248670 Zea mays HOM05D007062 ORTHO05D008941 3.3e-58 229.6 270 64.4
MD06G1065500 Malus domestica HOM05D007062 ORTHO05D008941 4.3e-58 229.2 281 61.9
VMungo1215G0274 Vigna mungo HOM05D007062 ORTHO05D008941 4.3e-58 229.2 284 61.3
FvH4_5g00330 Fragaria vesca HOM05D007062 ORTHO05D008941 7.3e-58 228.4 279 61.3
Aqoxy5G03933 Aquilegia oxysepala HOM05D007062 ORTHO05D008941 1.6e-57 227.3 282 62.8
Sabra03G0078200 Salix brachista HOM05D007062 ORTHO05D008941 2.1e-57 226.9 368 44.6
ClCG01G003790 Citrullus lanatus HOM05D007062 ORTHO05D008941 3.6e-57 226.1 282 60.6
Eucgr.D02028 Eucalyptus grandis HOM05D007062 ORTHO05D008941 3.6e-57 226.1 268 49.6
Lalb_Chr16g0379721 Lupinus albus HOM05D007062 ORTHO05D008941 6.2e-57 225.3 220 72.3
Ah.02g116970 Amaranthus hybridus HOM05D007062 ORTHO05D008941 1.1e-56 224.6 276 62.3
ECA232G1654 Erigeron canadensis HOM05D007062 ORTHO05D008941 1.1e-56 224.6 278 59.7
FAN08G1089 Fragaria x ananassa HOM05D007062 ORTHO05D008941 1.1e-56 224.6 292 59.2
FAN18G0001 Fragaria x ananassa HOM05D007062 ORTHO05D008941 1.1e-56 224.6 292 59.2
Sp1g10870 Schrenkiella parvula HOM05D007062 ORTHO05D008941 1.1e-56 224.6 284 61.6
Sc06g0007370 Simmondsia chinensis HOM05D007062 ORTHO05D008941 1.1e-56 224.6 278 62.9
HPP92_003260 Vanilla planifolia HOM05D007062 ORTHO05D008941 1.1e-56 224.6 256 65.2
Medtr5g012110 Medicago truncatula HOM05D007062 ORTHO05D008941 2.4e-56 223.4 257 64.6
Aa31LG1G2430 Aethionema arabicum HOM05D007062 ORTHO05D008941 5.2e-56 222.2 290 50.3
BcaC07g41714 Brassica carinata HOM05D007062 ORTHO05D008941 6.9e-56 221.9 285 60.7
Thhalv10008422m.g Eutrema salsugineum HOM05D007062 ORTHO05D008941 6.9e-56 221.9 284 60.9
BcaC07g42568 Brassica carinata HOM05D007062 ORTHO05D008941 2.0e-55 220.3 281 60.5
C08p47500 Brassica napus HOM05D007062 ORTHO05D008941 2.0e-55 220.3 283 60.4
BolC8t52291H Brassica oleracea HOM05D007062 ORTHO05D008941 2.6e-55 219.9 283 60.8
PSO063G0503 Papaver somniferum HOM05D007062 ORTHO05D008941 3.4e-55 219.5 274 62.0
CANSAT21G0465 Cannabis sativa HOM05D007062 ORTHO05D008941 5.8e-55 218.8 287 61.7
TWI60G0310 Tripterygium wilfordii HOM05D007062 ORTHO05D008941 9.9e-55 218.0 222 71.2
HanXRQChr02g0049591 Helianthus annuus HOM05D007062 ORTHO05D008941 3.8e-54 216.1 311 56.9
A09p63980 Brassica napus HOM05D007062 ORTHO05D008941 1.1e-53 214.5 281 59.4
BraA09t41747Z Brassica rapa HOM05D007062 ORTHO05D008941 1.4e-53 214.2 281 60.1
AL1G23540 Arabidopsis lyrata HOM05D007062 ORTHO05D008941 2.4e-53 213.4 282 58.2
Carub.0001s1193 Capsella rubella HOM05D007062 ORTHO05D008941 2.4e-53 213.4 278 59.7
AT1G12250 Arabidopsis thaliana HOM05D007062 ORTHO05D008941 4.2e-53 212.6 283 59.0
vmacro05405 Vaccinium macrocarpon HOM05D007062 ORTHO05D008941 4.2e-53 212.6 196 75.0
PSO782G2909 Papaver somniferum HOM05D007062 ORTHO05D008941 4.6e-52 209.1 283 55.8
SEGI_22381 Sequoiadendron giganteum HOM05D007062 ORTHO05D008941 7.8e-52 208.4 215 69.3
Glyma.01G211100 Glycine max HOM05D007062 ORTHO05D008941 2.5e-50 203.4 232 54.3
FAN04G1528 Fragaria x ananassa HOM05D007062 ORTHO05D008941 1.3e-49 201.1 251 51.8
ATR0568G204 Amborella trichopoda HOM05D007062 ORTHO05D008941 1.4e-48 197.6 196 70.9
CDE04G1356 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 1.5e-47 194.1 156 89.1
Hma1.2p1_1691F.1_g297800 Hydrangea macrophylla HOM05D007062 ORTHO05D008941 2.0e-47 193.7 148 89.9
AUR62007471 Chenopodium quinoa HOM05D007062 ORTHO05D008941 4.5e-47 192.6 182 72.0
CBR_g19734 Chara braunii HOM05D007062 ORTHO05D008941 5.8e-47 192.2 218 57.3
Pp3c21_17930 Physcomitrium patens HOM05D007062 ORTHO05D008941 7.6e-47 191.8 211 68.2
FAN13G1422 Fragaria x ananassa HOM05D007062 ORTHO05D008941 1.7e-46 190.7 215 52.1
AUR62039929 Chenopodium quinoa HOM05D007062 ORTHO05D008941 1.6e-41 174.1 146 78.8
AUR62043761 Chenopodium quinoa HOM05D007062 ORTHO05D008941 1.6e-41 174.1 146 78.8
DCAR_004919 Daucus carota HOM05D007062 ORTHO05D008941 2.8e-41 173.3 146 84.9
GSVIVG01001268001 Vitis vinifera HOM05D007062 ORTHO05D008941 1.2e-39 167.9 146 65.1
Dinv39100 Davidia involucrata HOM05D007062 ORTHO05D008941 2.6e-39 166.8 193 57.0
AagrBONN_evm.TU.Sc2ySwM_228.1920 Anthoceros agrestis HOM05D000741 ORTHO05D000506 7.1e-37 158.7 249 54.2
Hma1.2p1_1691F.1_g297810 Hydrangea macrophylla HOM05D007062 ORTHO05D008941 7.1e-37 158.7 83 89.2
COL.COLO4_37223 Corchorus olitorius HOM05D007062 ORTHO05D008941 2.3e-35 153.7 85 85.9
CARHR012560 Cardamine hirsuta HOM05D007062 ORTHO05D008941 4.8e-33 146.0 81 85.2
Cfa012777 Carpinus fangiana HOM05D007062 ORTHO05D008941 4.5e-31 139.4 214 59.8
CAN.G1293.1 Capsicum annuum HOM05D007062 ORTHO05D008941 1.4e-29 134.4 139 56.1
Nn6g34047 Nelumbo nucifera HOM05D007062 ORTHO05D008941 5.1e-27 125.9 149 51.7
Haze_08582 Corylus avellana HOM05D007062 ORTHO05D008941 4.3e-26 122.9 144 51.4
Psat2g178680 Pisum sativum HOM05D007062 ORTHO05D008941 2.2e-25 120.6 205 58.5
Lj8A257G61 Lonicera japonica HOM05D007062 ORTHO05D008941 6.3e-25 119.0 94 68.1
Cre17.g721700 Chlamydomonas reinhardtii HOM05D007062 ORTHO05D008941 7.9e-20 102.1 181 47.5
CDE04G0607 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 1.3e-17 94.7 71 67.6
COL.COLO4_37221 Corchorus olitorius HOM05D007062 ORTHO05D008941 2.2e-14 84.0 62 72.6
MCO12G419 Micromonas commoda HOM05D007062 ORTHO05D008941 1.2e-12 78.2 108 73.1
SEGI_25676 Sequoiadendron giganteum HOM05D007062 ORTHO05D008941 3.1e-08 63.5 54 61.1
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 3.8e-06 56.6 85 47.1


User provided reference genes

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