Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.25529 Avicennia marina HOM05D007638 ORTHO05D009805 3.3e-233 811.2 381 100.0
Migut.A00967 Erythranthe guttata HOM05D007638 ORTHO05D009805 4.6e-158 561.6 381 70.3
Oeu017018.1 Olea europaea HOM05D007638 ORTHO05D009805 3.6e-155 552.0 380 68.7
Dinv39130 Davidia involucrata HOM05D007638 ORTHO05D009805 1.2e-142 510.4 379 63.1
SGA_v2.0_scaffold120G32873 Striga asiatica HOM05D007638 ORTHO05D009805 6.0e-142 508.1 371 67.7
CAN.G1218.20 Capsicum annuum HOM05D007638 ORTHO05D009805 9.9e-137 490.7 382 63.4
Hma1.2p1_2238F.1_g317800 Hydrangea macrophylla HOM05D007638 ORTHO05D009805 1.1e-135 487.3 378 62.2
Cc08_g12610 Coffea canephora HOM05D007638 ORTHO05D009805 3.5e-134 482.3 384 62.8
Sopen08g027220 Solanum pennellii HOM05D007638 ORTHO05D009805 4.6e-134 481.9 382 61.5
Solyc08g078750.4 Solanum lycopersicum HOM05D007638 ORTHO05D009805 1.0e-133 480.7 382 61.8
Peaxi162Scf00002g00171 Petunia axillaris HOM05D007638 ORTHO05D009805 3.9e-133 478.8 399 60.9
HanXRQChr17g0549771 Helianthus annuus HOM05D007638 ORTHO05D009805 5.3e-130 468.4 380 59.7
Manes.02G038700 Manihot esculenta HOM05D007638 ORTHO05D009805 2.6e-129 466.1 379 59.9
GSVIVG01001312001 Vitis vinifera HOM05D007638 ORTHO05D009805 1.3e-128 463.8 381 59.1
Atru.chr9.1327 Acer truncatum HOM05D007638 ORTHO05D009805 3.2e-127 459.1 383 57.4
QL12p012553 Quercus lobata HOM05D007638 ORTHO05D009805 5.5e-127 458.4 378 59.3
Potri.003G110600 Populus trichocarpa HOM05D007638 ORTHO05D009805 2.1e-126 456.4 381 60.9
Cfa012740 Carpinus fangiana HOM05D007638 ORTHO05D009805 5.1e-125 451.8 379 57.8
TWI15G0131 Tripterygium wilfordii HOM05D007638 ORTHO05D009805 5.1e-125 451.8 379 57.0
Thecc.03G253300 Theobroma cacao HOM05D007638 ORTHO05D009805 8.7e-125 451.1 379 56.7
CiPaw.12G109000 Carya illinoinensis HOM05D007638 ORTHO05D009805 1.9e-124 449.9 379 58.6
TAR636G1390 Trochodendron aralioides HOM05D007638 ORTHO05D009805 1.9e-124 449.9 387 58.7
CANSAT21G1304 Cannabis sativa HOM05D007638 ORTHO05D009805 2.4e-122 443.0 380 56.1
Sed0016401 Sechium edule HOM05D007638 ORTHO05D009805 9.0e-122 441.0 379 58.0
Prupe.5G071400 Prunus persica HOM05D007638 ORTHO05D009805 1.2e-121 440.7 380 57.4
MD06G1060400 Malus domestica HOM05D007638 ORTHO05D009805 7.7e-121 438.0 382 57.6
CsaV3_5G004170 Cucumis sativus L. HOM05D007638 ORTHO05D009805 5.0e-120 435.3 379 58.6
Sabra03G0076700 Salix brachista HOM05D007638 ORTHO05D009805 8.5e-120 434.5 381 59.1
Gohir.D09G190600 Gossypium hirsutum HOM05D007638 ORTHO05D009805 1.1e-119 434.1 379 54.4
Rhsim09G0039100 Rhododendron simsii HOM05D007638 ORTHO05D009805 2.5e-119 433.0 457 49.9
Hma1.2p1_3173F.1_g333580 Hydrangea macrophylla HOM05D007638 ORTHO05D009805 5.5e-119 431.8 409 53.8
Gorai.006G213300 Gossypium raimondii HOM05D007638 ORTHO05D009805 2.1e-118 429.9 379 54.1
Lalb_Chr16g0389341 Lupinus albus HOM05D007638 ORTHO05D009805 2.1e-118 429.9 384 57.3
TPR.G37700 Trifolium pratense HOM05D007638 ORTHO05D009805 3.6e-118 429.1 382 56.3
Ca_21958_v3 Cicer arietinum L. HOM05D007638 ORTHO05D009805 4.6e-118 428.7 384 56.8
Gohir.A09G196000 Gossypium hirsutum HOM05D007638 ORTHO05D009805 6.1e-118 428.3 379 53.8
FvH4_5g18700 Fragaria vesca HOM05D007638 ORTHO05D009805 5.1e-117 425.2 382 56.0
Glyma.05G058500 Glycine max HOM05D007638 ORTHO05D009805 6.7e-117 424.9 384 56.2
Lj4g0022413 Lotus japonicus HOM05D007638 ORTHO05D009805 1.1e-116 424.1 382 55.5
EL10Ac5g13054 Beta vulgaris HOM05D007638 ORTHO05D009805 5.7e-116 421.8 388 56.4
RcHm_v2.0_Chr7g0202991 Rosa chinensis HOM05D007638 ORTHO05D009805 1.7e-115 420.2 382 55.2
Nn1g01039 Nelumbo nucifera HOM05D007638 ORTHO05D009805 2.8e-115 419.5 383 56.1
Ciclev10020230m.g Citrus clementina HOM05D007638 ORTHO05D009805 3.4e-113 412.5 383 54.6
Lsat_1_v5_gn_3_541 Lactuca sativa HOM05D007638 ORTHO05D009805 5.9e-113 411.8 393 55.0
arahy.Tifrunner.gnm1.ann1.UY0NCU Arachis hypogaea HOM05D007638 ORTHO05D009805 1.0e-112 411.0 385 56.4
Eucgr.D02067 Eucalyptus grandis HOM05D007638 ORTHO05D009805 3.8e-112 409.1 379 54.6
THA.LOC104812781 Tarenaya hassleriana HOM05D007638 ORTHO05D009805 5.0e-112 408.7 409 51.1
Hund14529 Selenicereus undatus HOM05D007638 ORTHO05D009805 3.6e-110 402.5 384 54.9
Ah.02g116770 Amaranthus hybridus HOM05D007638 ORTHO05D009805 2.6e-108 396.4 387 52.5
Nitab4.5_0008481g0020 Nicotiana tabacum HOM05D007638 ORTHO05D009805 5.7e-108 395.2 367 56.1
Sc07g0009320 Simmondsia chinensis HOM05D007638 ORTHO05D009805 1.3e-107 394.0 382 52.6
PSO781G0038 Papaver somniferum HOM05D007638 ORTHO05D009805 2.8e-107 392.9 384 53.9
AUR62007504 Chenopodium quinoa HOM05D007638 ORTHO05D009805 5.3e-106 388.7 319 57.4
PSO541G0423 Papaver somniferum HOM05D007638 ORTHO05D009805 5.9e-105 385.2 385 54.3
Nitab4.5_0000312g0180 Nicotiana tabacum HOM05D007638 ORTHO05D009805 3.8e-104 382.5 325 59.4
DCAR_008488 Daucus carota HOM05D007638 ORTHO05D009805 5.0e-104 382.1 323 55.4
FAN13G2113 Fragaria x ananassa HOM05D007638 ORTHO05D009805 1.5e-100 370.5 346 54.3
FAN18G0664 Fragaria x ananassa HOM05D007638 ORTHO05D009805 2.2e-99 366.7 323 56.0
arahy.Tifrunner.gnm1.ann1.E4IRCP Arachis hypogaea HOM05D007638 ORTHO05D009805 1.1e-98 364.4 350 54.0
Aa31LG2G12650 Aethionema arabicum HOM05D007638 ORTHO05D009805 5.9e-97 358.6 386 49.5
Psat4g071600 Pisum sativum HOM05D007638 ORTHO05D009805 2.5e-95 353.2 325 54.2
ATR1153G083 Amborella trichopoda HOM05D007638 ORTHO05D009805 4.2e-95 352.4 311 53.1
FAN08G1927 Fragaria x ananassa HOM05D007638 ORTHO05D009805 1.4e-93 347.4 381 50.7
AUR62039957 Chenopodium quinoa HOM05D007638 ORTHO05D009805 7.5e-92 341.7 288 56.9
Sp7g15100 Schrenkiella parvula HOM05D007638 ORTHO05D009805 8.3e-91 338.2 381 44.9
PGR031G3001 Punica granatum HOM05D007638 ORTHO05D009805 4.1e-90 335.9 385 47.8
SEGI_06661 Sequoiadendron giganteum HOM05D007638 ORTHO05D009805 1.5e-87 327.4 306 51.0
Aqoxy7G00749 Aquilegia oxysepala HOM05D007638 ORTHO05D009805 9.4e-87 324.7 349 49.0
CDE11G1220 Ceratophyllum demersum HOM05D007638 ORTHO05D009805 6.8e-85 318.5 345 47.8
vmacro00554 Vaccinium macrocarpon HOM05D007638 ORTHO05D009805 8.6e-80 301.6 445 42.7
Pp3c9_14850 Physcomitrium patens HOM05D007638 ORTHO05D009805 2.1e-78 297.0 358 43.0
ClCG01G003990 Citrullus lanatus HOM05D007638 ORTHO05D009805 6.8e-77 292.0 402 42.5
PGSC0003DMG400004754 Solanum tuberosum HOM05D007638 ORTHO05D009805 1.4e-74 284.3 262 53.8
CBR_g20284 Chara braunii HOM05D007638 ORTHO05D009805 3.6e-70 269.6 385 36.1
AagrBONN_evm.TU.Sc2ySwM_228.4592 Anthoceros agrestis HOM05D007638 ORTHO05D009805 3.2e-58 229.9 310 39.7
Duzib084G1003 Durio zibethinus HOM05D007638 ORTHO05D009805 3.5e-57 226.5 266 44.0
FAN04G2384 Fragaria x ananassa HOM05D007638 ORTHO05D009805 2.6e-52 210.3 208 51.0
Actinidia02124 Actinidia chinensis HOM05D007638 ORTHO05D009805 1.0e-48 198.4 241 44.8
DCAR_008487 Daucus carota HOM05D007638 ORTHO05D009805 5.1e-48 196.1 245 42.0
Cpa.g.sc29.142 Carica papaya HOM05D007638 ORTHO05D009805 3.4e-44 183.3 224 43.8
Eucgr.D02064 Eucalyptus grandis HOM05D007638 ORTHO05D009805 8.4e-43 178.7 259 39.4
CSS0011551 Camellia sinensis var. sinensis HOM05D007638 ORTHO05D009805 3.5e-41 173.3 95 81.1
MELO3C033998.2 Cucumis melo HOM05D007638 ORTHO05D009805 2.6e-36 157.1 259 42.5
Haze_07891 Corylus avellana HOM05D007638 ORTHO05D009805 1.4e-18 98.2 165 39.4
MELO3C014755.2 Cucumis melo HOM05D000032 ORTHO05D009383 2.4e-13 80.9 106 40.6
Ah.15g094020 Amaranthus hybridus HOM05D000032 ORTHO05D009383 3.1e-13 80.5 108 39.8
RcHm_v2.0_Chr2g0147891 Rosa chinensis HOM05D000032 ORTHO05D009383 6.9e-13 79.3 70 54.3
TWI32G0219 Tripterygium wilfordii HOM05D000032 ORTHO05D009383 6.9e-13 79.3 56 62.5
unitig_0.g181 Utricularia gibba HOM05D000032 ORTHO05D009383 2.0e-12 77.8 72 54.2
AagrBONN_evm.TU.Sc2ySwM_369.192 Anthoceros agrestis HOM05D000032 ORTHO05D009383 3.4e-12 77.0 69 50.7
Haze_07890 Corylus avellana HOM05D007638 ORTHO05D009805 5.8e-12 76.3 37 83.8
FvH4_6g35850 Fragaria vesca HOM05D000032 ORTHO05D009383 5.8e-12 76.3 72 51.4
FAN02G2103 Fragaria x ananassa HOM05D000032 ORTHO05D009383 5.8e-12 76.3 72 51.4
FAN05G0348 Fragaria x ananassa HOM05D000032 ORTHO05D009383 5.8e-12 76.3 72 51.4
FAN14G3162 Fragaria x ananassa HOM05D000032 ORTHO05D009383 5.8e-12 76.3 72 51.4
FAN14G3671 Fragaria x ananassa HOM05D000032 ORTHO05D009383 5.8e-12 76.3 72 51.4
CSS0028588 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D009383 7.6e-12 75.9 69 50.7
DCAR_008449 Daucus carota HOM05D000032 ORTHO05D009383 7.6e-12 75.9 88 50.0
AUR62001157 Chenopodium quinoa HOM05D000032 ORTHO05D009383 1.0e-11 75.5 56 55.4
ClCG05G012450 Citrullus lanatus HOM05D000032 ORTHO05D009383 1.0e-11 75.5 62 54.8
Glyma.02G068300 Glycine max HOM05D000032 ORTHO05D009383 1.0e-11 75.5 70 45.7
PGSC0003DMG400032150 Solanum tuberosum HOM05D000032 ORTHO05D009383 1.0e-11 75.5 86 45.3
AUR62016519 Chenopodium quinoa HOM05D000032 ORTHO05D009383 1.3e-11 75.1 55 56.4
CARHR074860 Cardamine hirsuta HOM05D000032 ORTHO05D009383 1.7e-11 74.7 40 72.5
Sopen01g002340 Solanum pennellii HOM05D000032 ORTHO05D009383 1.7e-11 74.7 86 45.3
Nn3g18407 Nelumbo nucifera HOM05D000032 ORTHO05D009383 2.2e-11 74.3 70 51.4
Sc14g0008440 Simmondsia chinensis HOM05D000032 ORTHO05D009383 2.2e-11 74.3 50 64.0
GSVIVG01032945001 Vitis vinifera HOM05D007638 ORTHO05D009383 2.2e-11 74.3 70 50.0
Eucgr.L03255 Eucalyptus grandis HOM05D000032 ORTHO05D009383 2.9e-11 73.9 125 35.2
Cpa.g.sc17.215 Carica papaya HOM05D000032 ORTHO05D009383 3.8e-11 73.6 41 73.2
CiPaw.14G093500 Carya illinoinensis HOM05D000032 ORTHO05D009383 3.8e-11 73.6 76 52.6
CsaV3_3G020080 Cucumis sativus L. HOM05D000032 ORTHO05D009383 3.8e-11 73.6 90 41.1
Glyma.16G149800 Glycine max HOM05D000032 ORTHO05D009383 3.8e-11 73.6 82 42.7
PSO384G0785 Papaver somniferum HOM05D000032 ORTHO05D009383 3.8e-11 73.6 40 75.0
Prupe.3G315400 Prunus persica HOM05D001005 ORTHO05D000836 3.8e-11 73.6 81 45.7
CBR_g3873 Chara braunii HOM05D000032 ORTHO05D009383 5.0e-11 73.2 50 60.0
Eucgr.K02338 Eucalyptus grandis HOM05D000032 ORTHO05D009383 5.0e-11 73.2 109 38.5
Peaxi162Scf00192g00012 Petunia axillaris HOM05D000032 ORTHO05D009383 5.0e-11 73.2 69 49.3
Manes.04G096700 Manihot esculenta HOM05D000032 ORTHO05D009383 6.5e-11 72.8 57 59.6
Atru.chr12.440 Acer truncatum HOM05D000032 ORTHO05D009383 8.4e-11 72.4 60 55.0
EL10Ac7g17945 Beta vulgaris HOM05D000032 ORTHO05D009383 8.4e-11 72.4 70 47.1
CSS0019503 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D009383 8.4e-11 72.4 40 72.5
Hma1.2p1_0098F.1_g048240 Hydrangea macrophylla HOM05D000032 ORTHO05D009383 8.4e-11 72.4 53 56.6
Lsat_1_v5_gn_2_101321 Lactuca sativa HOM05D000032 ORTHO05D009383 8.4e-11 72.4 108 41.7
PSO339G1569 Papaver somniferum HOM05D000032 ORTHO05D009383 8.4e-11 72.4 40 75.0
MSTRG.18394 Avicennia marina HOM05D000032 ORTHO05D009383 1.1e-10 72.0 64 53.1
FAN09G2555 Fragaria x ananassa HOM05D000032 ORTHO05D009383 1.1e-10 72.0 72 50.0
THA.LOC104823368 Tarenaya hassleriana HOM05D000032 ORTHO05D009383 1.1e-10 72.0 41 68.3
Cfa010055 Carpinus fangiana HOM05D001005 ORTHO05D000836 1.4e-10 71.6 65 52.3
HanXRQChr14g0453351 Helianthus annuus HOM05D000032 ORTHO05D009383 1.4e-10 71.6 70 50.0
MBI11_g17278_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D009383 1.4e-10 71.6 62 54.8
Medtr6g033070 Medicago truncatula HOM05D000032 ORTHO05D009383 1.4e-10 71.6 71 39.4
Solyc01g006340.3 Solanum lycopersicum HOM05D000032 ORTHO05D009383 1.4e-10 71.6 69 47.8
vmacro21760 Vaccinium macrocarpon HOM05D000032 ORTHO05D009383 1.4e-10 71.6 40 72.5
Ca_04506_v3 Cicer arietinum L. HOM05D000032 ORTHO05D009383 1.9e-10 71.2 56 55.4
Aqoxy7G03583 Aquilegia oxysepala HOM05D000032 ORTHO05D009383 2.5e-10 70.9 62 50.0
Lj1A470G20 Lonicera japonica HOM05D000032 ORTHO05D009383 2.5e-10 70.9 40 72.5
Lj1A478G35 Lonicera japonica HOM05D000032 ORTHO05D009383 2.5e-10 70.9 40 72.5
Lalb_Chr03g0043781 Lupinus albus HOM05D000032 ORTHO05D009383 2.5e-10 70.9 42 61.9
Rhsim13G0227500 Rhododendron simsii HOM05D006358 ORTHO05D009383 2.5e-10 70.9 49 63.3
Zm00001eb235630 Zea mays HOM05D000032 ORTHO05D009383 2.5e-10 70.9 49 61.2
AL3G10020 Arabidopsis lyrata HOM05D000032 ORTHO05D009383 3.2e-10 70.5 41 65.9
CDE07G0397 Ceratophyllum demersum HOM05D000032 ORTHO05D009383 3.2e-10 70.5 49 61.2
Nitab4.5_0003436g0100 Nicotiana tabacum HOM05D000032 ORTHO05D009383 3.2e-10 70.5 69 47.8
Sp3g00020 Schrenkiella parvula HOM05D000032 ORTHO05D009383 3.2e-10 70.5 50 60.0
Migut.D00539 Erythranthe guttata HOM05D000032 ORTHO05D009383 4.2e-10 70.1 54 55.6
Pp3c8_12050 Physcomitrium patens HOM05D000032 ORTHO05D009383 4.2e-10 70.1 41 65.9
TPR.G6050 Trifolium pratense HOM05D000032 ORTHO05D009383 4.2e-10 70.1 40 65.0
arahy.Tifrunner.gnm1.ann1.8UB6M3 Arachis hypogaea HOM05D000032 ORTHO05D009383 5.5e-10 69.7 73 46.6
PGR044G2709 Punica granatum HOM05D000032 ORTHO05D009383 5.5e-10 69.7 49 59.2
Aa31LG5G11250 Aethionema arabicum HOM05D000032 ORTHO05D009383 7.2e-10 69.3 41 68.3
CAN.G140.9 Capsicum annuum HOM05D000032 ORTHO05D009383 7.2e-10 69.3 69 49.3
Ciclev10017882m.g Citrus clementina HOM05D000032 ORTHO05D009383 7.2e-10 69.3 40 67.5
VMungo0464G1688 Vigna mungo HOM05D000032 ORTHO05D009383 7.2e-10 69.3 45 64.4
Lj3g0015614 Lotus japonicus HOM05D000032 ORTHO05D009383 9.3e-10 68.9 55 52.7
Potri.014G140100 Populus trichocarpa HOM05D000032 ORTHO05D009383 9.3e-10 68.9 44 61.4
SGA_v2.0_scaffold8G04635 Striga asiatica HOM05D000032 ORTHO05D009383 9.3e-10 68.9 68 44.1
Cc01_g03330 Coffea canephora HOM05D000032 ORTHO05D009383 1.2e-09 68.6 49 61.2
MD17G1003800 Malus domestica HOM05D000032 ORTHO05D009383 1.2e-09 68.6 62 51.6
TAR633G1362 Trochodendron aralioides HOM05D000032 ORTHO05D009383 1.2e-09 68.6 102 41.2
Psat1g014560 Pisum sativum HOM05D000032 ORTHO05D009383 2.1e-09 67.8 40 62.5
QL02p068178 Quercus lobata HOM05D000032 ORTHO05D009383 2.1e-09 67.8 54 55.6
AT3G02065 Arabidopsis thaliana HOM05D000032 ORTHO05D009383 2.7e-09 67.4 41 63.4
ECA238G2389 Erigeron canadensis HOM05D000032 ORTHO05D009383 2.7e-09 67.4 40 67.5
ATR0824G065 Amborella trichopoda HOM05D000032 ORTHO05D009383 3.5e-09 67.0 55 56.4
Thecc.04G052100 Theobroma cacao HOM05D000032 ORTHO05D009383 3.5e-09 67.0 44 61.4
arahy.Tifrunner.gnm1.ann1.BLPY9G Arachis hypogaea HOM05D007638 ORTHO05D009383 4.6e-09 66.6 95 36.8
Mapoly0135s0036 Marchantia polymorpha HOM05D000032 ORTHO05D009383 4.6e-09 66.6 128 28.1
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 6.1e-09 66.2 85 37.6
Duzib187G1127 Durio zibethinus HOM05D000032 ORTHO05D009383 7.9e-09 65.9 68 48.5
SHI50144 Sapria himalayana HOM05D000032 ORTHO05D009383 7.9e-09 65.9 112 34.8
Gohir.D10G081800 Gossypium hirsutum HOM05D000032 ORTHO05D009383 1.0e-08 65.5 40 65.0
Gorai.011G088700 Gossypium raimondii HOM05D000032 ORTHO05D009383 1.0e-08 65.5 44 61.4
COL.COLO4_13406 Corchorus olitorius HOM05D000032 ORTHO05D009383 1.3e-08 65.1 40 67.5
Thhalv10020567m.g Eutrema salsugineum HOM05D000032 ORTHO05D009383 1.3e-08 65.1 40 62.5
arahy.Tifrunner.gnm1.ann1.U3NDHF Arachis hypogaea HOM05D000032 ORTHO05D009383 1.8e-08 64.7 67 46.3
Gohir.A10G069700 Gossypium hirsutum HOM05D000032 ORTHO05D009383 1.8e-08 64.7 40 62.5
Carub.0003s0002 Capsella rubella HOM05D000032 ORTHO05D009383 2.3e-08 64.3 41 61.0
SMO201G0222 Selaginella moellendorffii HOM05D000032 ORTHO05D009383 4.3e-07 60.1 44 52.3
Haze_14989 Corylus avellana HOM05D000032 ORTHO05D009383 9.7e-07 58.9 64 48.4
EL10Ac9g22788 Beta vulgaris HOM05D000032 ORTHO05D009383 1.3e-06 58.5 93 35.5
CSS0012229 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D009383 6.3e-06 56.2 79 41.8


User provided reference genes

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