Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.25437 Avicennia marina HOM05D006403 ORTHO05D008130 7.3e-184 647.1 333 100.0
SGA_v2.0_scaffold24G10549 Striga asiatica HOM05D006403 ORTHO05D008130 2.4e-126 456.1 334 72.5
Oeu017876.2 Olea europaea HOM05D006403 ORTHO05D008130 6.9e-126 454.5 339 73.2
Migut.C01242 Erythranthe guttata HOM05D006403 ORTHO05D008130 1.4e-115 420.2 330 70.0
Dinv41688 Davidia involucrata HOM05D006403 ORTHO05D008130 9.4e-107 391.0 334 66.8
CSS0028864 Camellia sinensis var. sinensis HOM05D006403 ORTHO05D008130 6.7e-105 384.8 333 64.3
SalBow7G4031 Salvia bowleyana HOM05D006403 ORTHO05D008130 4.8e-103 378.6 244 83.6
Nitab4.5_0000159g0220 Nicotiana tabacum HOM05D006403 ORTHO05D008130 7.0e-102 374.8 334 63.2
Rhsim08G0049700 Rhododendron simsii HOM05D006403 ORTHO05D008130 8.5e-100 367.9 237 81.4
Cc00_g04840 Coffea canephora HOM05D006403 ORTHO05D008130 5.5e-99 365.2 329 61.7
CAN.G61.29 Capsicum annuum HOM05D006403 ORTHO05D008130 4.7e-98 362.1 338 61.2
PGSC0003DMG400009235 Solanum tuberosum HOM05D006403 ORTHO05D008130 8.0e-98 361.3 335 62.4
Sopen11g009110 Solanum pennellii HOM05D006403 ORTHO05D008130 1.4e-97 360.5 332 62.0
Solyc11g017200.2 Solanum lycopersicum HOM05D006403 ORTHO05D008130 2.3e-97 359.8 270 71.5
GSVIVG01034503001 Vitis vinifera HOM05D006403 ORTHO05D008130 6.7e-97 358.2 254 75.2
Oeu000555.1 Olea europaea HOM05D006403 ORTHO05D008130 8.8e-97 357.8 261 74.7
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 4.4e-96 355.5 247 73.3
Nn8g40759 Nelumbo nucifera HOM05D006403 ORTHO05D008130 5.7e-96 355.1 237 77.2
Peaxi162Scf00495g00011 Petunia axillaris HOM05D006403 ORTHO05D008130 9.7e-96 354.4 271 70.5
ClCG09G010420 Citrullus lanatus HOM05D006403 ORTHO05D008130 1.3e-95 354.0 239 77.8
MELO3C023667.2 Cucumis melo HOM05D006403 ORTHO05D008130 2.2e-95 353.2 239 77.8
CANSAT78G0580 Cannabis sativa HOM05D006403 ORTHO05D008130 2.8e-95 352.8 229 79.9
CsaV3_7G024130 Cucumis sativus L. HOM05D006403 ORTHO05D008130 4.8e-95 352.1 239 77.4
PGR042G3834 Punica granatum HOM05D006403 ORTHO05D008130 1.1e-94 350.9 234 78.6
Sc23g0004870 Simmondsia chinensis HOM05D006403 ORTHO05D008130 1.1e-94 350.9 236 77.5
Ciclev10001887m.g Citrus clementina HOM05D006403 ORTHO05D008130 1.4e-94 350.5 252 73.8
COL.COLO4_36653 Corchorus olitorius HOM05D006403 ORTHO05D008130 1.4e-94 350.5 253 74.3
Eucgr.F02626 Eucalyptus grandis HOM05D006403 ORTHO05D008130 1.4e-94 350.5 246 76.8
Duzib177G0036 Durio zibethinus HOM05D006403 ORTHO05D008130 9.1e-94 347.8 236 78.4
Gohir.D13G125700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 1.6e-93 347.1 227 80.2
Gorai.013G140800 Gossypium raimondii HOM05D006403 ORTHO05D008130 1.6e-93 347.1 227 80.2
Lj7A297T43 Lonicera japonica HOM05D006403 ORTHO05D008130 1.6e-93 347.1 248 73.8
AUR62013765 Chenopodium quinoa HOM05D006403 ORTHO05D008130 3.5e-93 345.9 239 74.9
Hma1.2p1_0072F.1_g038220 Hydrangea macrophylla HOM05D006403 ORTHO05D008130 5.9e-93 345.1 236 76.3
CiPaw.16G062500 Carya illinoinensis HOM05D006403 ORTHO05D008130 7.7e-93 344.7 234 76.9
PSO732G0029 Papaver somniferum HOM05D006403 ORTHO05D008130 7.7e-93 344.7 217 78.8
PSO675G8117 Papaver somniferum HOM05D006403 ORTHO05D008130 1.0e-92 344.4 244 71.7
Thecc.08G202600 Theobroma cacao HOM05D006403 ORTHO05D008130 1.3e-92 344.0 254 74.4
AUR62023390 Chenopodium quinoa HOM05D006403 ORTHO05D008130 2.2e-92 343.2 239 73.6
Hund27413 Selenicereus undatus HOM05D006403 ORTHO05D008130 5.0e-92 342.0 219 83.1
Haze_17907 Corylus avellana HOM05D006403 ORTHO05D008130 8.5e-92 341.3 235 76.2
Potri.013G114500 Populus trichocarpa HOM05D006403 ORTHO05D008130 1.1e-91 340.9 223 79.8
Aqoxy7G00855 Aquilegia oxysepala HOM05D006403 ORTHO05D008130 1.5e-91 340.5 245 70.2
Manes.18G099900 Manihot esculenta HOM05D006403 ORTHO05D008130 1.5e-91 340.5 223 81.2
Sed0020052 Sechium edule HOM05D006403 ORTHO05D008130 2.5e-91 339.7 237 74.3
Actinidia29416 Actinidia chinensis HOM05D006403 ORTHO05D008130 4.2e-91 339.0 321 59.5
Cfa018202 Carpinus fangiana HOM05D006403 ORTHO05D008130 4.2e-91 339.0 235 76.2
Gohir.A13G121700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 4.2e-91 339.0 267 70.8
Potri.019G085200 Populus trichocarpa HOM05D006403 ORTHO05D008130 3.6e-90 335.9 223 78.5
EL10Ac1g00740 Beta vulgaris HOM05D006403 ORTHO05D008130 6.1e-90 335.1 229 75.1
QL02p034075 Quercus lobata HOM05D006403 ORTHO05D008130 6.1e-90 335.1 233 76.0
RcHm_v2.0_Chr3g0495761 Rosa chinensis HOM05D006403 ORTHO05D008130 6.1e-90 335.1 234 74.4
HanXRQChr02g0040151 Helianthus annuus HOM05D006403 ORTHO05D008130 1.8e-89 333.6 231 76.2
FAN28G0939 Fragaria x ananassa HOM05D006403 ORTHO05D008130 2.3e-89 333.2 303 62.0
TWI32G0485 Tripterygium wilfordii HOM05D006403 ORTHO05D008130 8.8e-89 331.3 317 60.9
FAN19G1279 Fragaria x ananassa HOM05D006403 ORTHO05D008130 2.0e-88 330.1 229 75.1
ECA233G3842 Erigeron canadensis HOM05D006403 ORTHO05D008130 2.6e-88 329.7 201 83.6
Sabra13G0096800 Salix brachista HOM05D005981 ORTHO05D008130 3.4e-88 329.3 269 69.1
Atru.chr13.1807 Acer truncatum HOM05D006403 ORTHO05D008130 4.4e-88 328.9 213 79.8
Atru.chr13.1815 Acer truncatum HOM05D006403 ORTHO05D008130 4.4e-88 328.9 213 79.8
FvH4_1g29740 Fragaria vesca HOM05D006403 ORTHO05D008130 4.4e-88 328.9 305 61.0
FAN26G2688 Fragaria x ananassa HOM05D006403 ORTHO05D008130 4.4e-88 328.9 234 73.5
Lalb_Chr01g0010051 Lupinus albus HOM05D006403 ORTHO05D008130 7.5e-88 328.2 252 69.8
Lalb_Chr19g0129801 Lupinus albus HOM05D006403 ORTHO05D008130 7.5e-88 328.2 264 67.0
THA.LOC104800111 Tarenaya hassleriana HOM05D006403 ORTHO05D008130 9.7e-88 327.8 237 74.3
FAN23G0108 Fragaria x ananassa HOM05D006403 ORTHO05D008130 1.7e-87 327.0 234 73.1
Duzib116G0580 Durio zibethinus HOM05D006403 ORTHO05D008130 2.8e-87 326.2 239 74.1
MBI17_g12885_MAGBIO Magnolia biondii HOM05D006403 ORTHO05D008130 2.8e-87 326.2 263 66.2
A09p42040 Brassica napus HOM05D006403 ORTHO05D008130 8.3e-87 324.7 205 83.4
Lsat_1_v5_gn_1_12940 Lactuca sativa HOM05D006403 ORTHO05D008130 8.3e-87 324.7 278 66.2
Prupe.7G018000 Prunus persica HOM05D006403 ORTHO05D008130 1.1e-86 324.3 237 71.3
C05p21830 Brassica napus HOM05D006403 ORTHO05D008130 1.4e-86 323.9 206 83.0
MD12G1013600 Malus domestica HOM05D006403 ORTHO05D008130 1.4e-86 323.9 235 71.5
BraA09t39690Z Brassica rapa HOM05D006403 ORTHO05D008130 1.8e-86 323.6 205 83.4
BolC5t30876H Brassica oleracea HOM05D006403 ORTHO05D008130 2.4e-86 323.2 206 82.5
arahy.Tifrunner.gnm1.ann1.RC57KJ Arachis hypogaea HOM05D006403 ORTHO05D008130 3.1e-86 322.8 269 66.9
Thhalv10008318m.g Eutrema salsugineum HOM05D006403 ORTHO05D008130 7.0e-86 321.6 206 81.6
Carub.0001s2222 Capsella rubella HOM05D006403 ORTHO05D008130 1.2e-85 320.9 206 81.6
Aa31LG7G6600 Aethionema arabicum HOM05D006403 ORTHO05D008130 1.6e-85 320.5 206 81.6
ATR1127G194 Amborella trichopoda HOM05D006403 ORTHO05D008130 2.0e-85 320.1 218 75.2
AL1G36240 Arabidopsis lyrata HOM05D006403 ORTHO05D008130 3.5e-85 319.3 206 81.6
Sp1g20210 Schrenkiella parvula HOM05D006403 ORTHO05D008130 4.5e-85 318.9 206 81.6
AT1G22700 Arabidopsis thaliana HOM05D006403 ORTHO05D008130 5.9e-85 318.5 206 81.6
A07p14250 Brassica napus HOM05D006403 ORTHO05D008130 1.7e-84 317.0 206 80.6
Lj5g0000123 Lotus japonicus HOM05D006403 ORTHO05D008130 1.7e-84 317.0 223 74.4
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 2.2e-84 316.6 267 65.9
vmacro18286 Vaccinium macrocarpon HOM05D006403 ORTHO05D008130 2.9e-84 316.2 320 58.8
CARHR023070 Cardamine hirsuta HOM05D006403 ORTHO05D008130 3.8e-84 315.8 206 80.6
HPP92_025360 Vanilla planifolia HOM05D006403 ORTHO05D008130 3.8e-84 315.8 215 74.9
BcaB03g14190 Brassica carinata HOM05D006403 ORTHO05D008130 5.0e-84 315.5 206 81.6
C07p20970 Brassica napus HOM05D006403 ORTHO05D008130 1.5e-83 313.9 208 79.3
unitig_747.g21467 Utricularia gibba HOM05D006403 ORTHO05D008130 1.5e-83 313.9 348 54.9
MD14G1011000 Malus domestica HOM05D006403 ORTHO05D008130 1.9e-83 313.5 253 66.4
BraA07t29182Z Brassica rapa HOM05D006403 ORTHO05D008130 7.2e-83 311.6 206 80.1
Ca_10605_v3 Cicer arietinum L. HOM05D006403 ORTHO05D008130 1.2e-82 310.8 223 74.0
Medtr1g096230 Medicago truncatula HOM05D006403 ORTHO05D008130 1.2e-82 310.8 220 73.6
arahy.Tifrunner.gnm1.ann1.3A12IQ Arachis hypogaea HOM05D006403 ORTHO05D008130 2.7e-82 309.7 260 66.2
Glyma.20G176400 Glycine max HOM05D006403 ORTHO05D008130 2.7e-82 309.7 213 77.9
Phvul.007G090400 Phaseolus vulgaris HOM05D006403 ORTHO05D008130 3.6e-82 309.3 216 76.9
Glyma.10G215300 Glycine max HOM05D006403 ORTHO05D008130 6.1e-82 308.5 213 77.9
Psat6g186640 Pisum sativum HOM05D006403 ORTHO05D008130 1.4e-81 307.4 210 75.7
BcaC06g34984 Brassica carinata HOM05D006403 ORTHO05D008130 8.8e-81 304.7 208 77.4
BolC7t42628H Brassica oleracea HOM05D006403 ORTHO05D008130 2.6e-80 303.1 283 61.1
CDE07G1616 Ceratophyllum demersum HOM05D006403 ORTHO05D008130 4.8e-79 298.9 189 79.9
Cpa.g.sc66.55 Carica papaya HOM05D006403 ORTHO05D008130 1.2e-77 294.3 165 89.7
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 1.0e-76 291.2 230 68.3
Zm00001eb320270 Zea mays HOM05D006403 ORTHO05D008130 1.5e-72 277.3 212 69.3
SEGI_04324 Sequoiadendron giganteum HOM05D006403 ORTHO05D008130 4.5e-69 265.8 209 64.1
AagrBONN_evm.TU.Sc2ySwM_362.2277 Anthoceros agrestis HOM05D006403 ORTHO05D008130 1.9e-62 243.8 197 62.9
BcaB03g14188 Brassica carinata HOM05D006403 ORTHO05D008130 1.9e-62 243.8 206 68.9
TPR.G1762 Trifolium pratense HOM05D006403 ORTHO05D008130 2.1e-58 230.3 142 79.6
Pp3c2_18600 Physcomitrium patens HOM05D006403 ORTHO05D008130 2.8e-58 229.9 185 60.5
Mapoly0015s0041 Marchantia polymorpha HOM05D006403 ORTHO05D008130 3.9e-52 209.5 236 49.2
Pp3c1_20680 Physcomitrium patens HOM05D006403 ORTHO05D008130 3.3e-51 206.5 166 60.8
CBR_g38402 Chara braunii HOM05D006403 ORTHO05D008130 1.4e-49 201.1 250 47.6
SMO118G0451 Selaginella moellendorffii HOM05D006403 ORTHO05D008130 4.4e-48 196.1 181 54.7
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 6.4e-47 192.2 137 75.9
MCO16G319 Micromonas commoda HOM05D006403 ORTHO05D008130 5.1e-44 182.6 177 52.0
Cre12.g524300 Chlamydomonas reinhardtii HOM05D006403 ORTHO05D008130 1.2e-42 177.9 178 52.2
RcHm_v2.0_Chr7g0219671 Rosa chinensis HOM05D006403 ORTHO05D008130 1.9e-38 164.1 143 63.6
RcHm_v2.0_Chr2g0092511 Rosa chinensis HOM05D006403 ORTHO05D008130 3.1e-33 146.7 158 55.7
PRCOL_00002033 Prasinoderma coloniale HOM05D006403 ORTHO05D008130 3.6e-26 123.2 150 41.3
RcHm_v2.0_Chr7g0199541 Rosa chinensis HOM05D006403 ORTHO05D008130 2.9e-23 113.6 68 83.8
Hma1.2p1_0072F.1_g038240 Hydrangea macrophylla HOM05D006403 ORTHO05D228046 3.8e-23 113.2 250 38.4
Os08g0347500 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 1.2e-16 91.7 53 84.9
TPR.G20530 Trifolium pratense HOM05D006403 ORTHO05D008130 7.6e-16 89.0 70 71.4
Rhsim08G0183100 Rhododendron simsii HOM05D005390 ORTHO05D007086 3.2e-06 57.0 134 25.4


User provided reference genes

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