Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.24750 Avicennia marina HOM05D006587 ORTHO05D008487 3.4e-203 711.4 359 100.0
SalBow5G0644 Salvia bowleyana HOM05D006587 ORTHO05D008487 3.3e-150 535.4 358 76.0
Migut.N00169 Erythranthe guttata HOM05D006587 ORTHO05D008487 3.7e-149 531.9 356 75.0
SalBow5G2730 Salvia bowleyana HOM05D006587 ORTHO05D008487 1.8e-140 503.1 359 72.1
SGA_v2.0_scaffold10G05110 Striga asiatica HOM05D006587 ORTHO05D008487 7.9e-136 487.6 361 69.8
Hma1.2p1_0511F.1_g168960 Hydrangea macrophylla HOM05D006587 ORTHO05D008487 9.7e-134 480.7 307 76.9
Potri.008G149800 Populus trichocarpa HOM05D006587 ORTHO05D008487 7.0e-132 474.6 315 74.9
GSVIVG01017920001 Vitis vinifera HOM05D006587 ORTHO05D008487 8.5e-130 467.6 356 68.0
Nitab4.5_0000144g0120 Nicotiana tabacum HOM05D006587 ORTHO05D008487 1.4e-129 466.8 365 66.3
Actinidia23494 Actinidia chinensis HOM05D006587 ORTHO05D008487 4.2e-129 465.3 307 74.6
Cc03_g03390 Coffea canephora HOM05D006587 ORTHO05D008487 4.2e-129 465.3 364 66.8
Manes.03G181700 Manihot esculenta HOM05D006587 ORTHO05D008487 7.2e-129 464.5 304 77.0
TAR362G0294 Trochodendron aralioides HOM05D006587 ORTHO05D008487 7.2e-129 464.5 302 75.8
Ciclev10005176m.g Citrus clementina HOM05D006587 ORTHO05D008487 1.2e-128 463.8 358 67.3
Prupe.1G154500 Prunus persica HOM05D006587 ORTHO05D008487 3.6e-128 462.2 357 68.6
THA.LOC104818820 Tarenaya hassleriana HOM05D006587 ORTHO05D008487 4.7e-128 461.8 306 73.9
PGR004G2885 Punica granatum HOM05D006587 ORTHO05D008487 8.0e-128 461.1 360 65.8
TAR633G1367 Trochodendron aralioides HOM05D006587 ORTHO05D008487 8.0e-128 461.1 311 74.6
CSS0008441 Camellia sinensis var. sinensis HOM05D006587 ORTHO05D008487 1.0e-127 460.7 304 74.7
Cfa015608 Carpinus fangiana HOM05D006587 ORTHO05D006035 2.3e-127 459.5 333 71.5
MD16G1187700 Malus domestica HOM05D006587 ORTHO05D008487 3.0e-127 459.1 357 67.8
Thecc.04G226500 Theobroma cacao HOM05D006587 ORTHO05D008487 3.0e-127 459.1 312 72.1
Atru.chr4.2522 Acer truncatum HOM05D006587 ORTHO05D008487 5.2e-127 458.4 368 66.3
Actinidia40165 Actinidia chinensis HOM05D006587 ORTHO05D008487 6.7e-127 458.0 363 65.8
Solyc01g079710.3 Solanum lycopersicum HOM05D006587 ORTHO05D008487 1.5e-126 456.8 356 66.0
Sopen01g031480 Solanum pennellii HOM05D006587 ORTHO05D008487 4.4e-126 455.3 356 65.7
CiPaw.02G094600 Carya illinoinensis HOM05D006587 ORTHO05D008487 7.4e-126 454.5 362 66.0
PSO302G0285 Papaver somniferum HOM05D006587 ORTHO05D008487 7.4e-126 454.5 302 72.2
ECA236G2554 Erigeron canadensis HOM05D006587 ORTHO05D008487 9.7e-126 454.1 303 73.3
Gorai.002G024100 Gossypium raimondii HOM05D006587 ORTHO05D008487 9.7e-126 454.1 358 63.7
Gohir.A01G023600 Gossypium hirsutum HOM05D006587 ORTHO05D008487 3.7e-125 452.2 357 63.9
MD13G1186800 Malus domestica HOM05D006587 ORTHO05D008487 4.8e-125 451.8 300 74.7
Gohir.D01G021600 Gossypium hirsutum HOM05D006587 ORTHO05D008487 8.2e-125 451.1 358 63.7
Sc19g0004360 Simmondsia chinensis HOM05D006587 ORTHO05D008487 8.2e-125 451.1 366 65.3
VMungo0720G0184 Vigna mungo HOM05D006587 ORTHO05D008487 1.1e-124 450.7 301 72.4
Rhsim04G0204300 Rhododendron simsii HOM05D006587 ORTHO05D008487 1.4e-124 450.3 301 74.8
MELO3C006549.2 Cucumis melo HOM05D006587 ORTHO05D008487 2.4e-124 449.5 299 72.6
FAN07G2036 Fragaria x ananassa HOM05D006587 ORTHO05D008487 3.1e-124 449.1 356 67.1
Glyma.20G143100 Glycine max HOM05D006587 ORTHO05D008487 3.1e-124 449.1 352 65.3
CsaV3_3G013530 Cucumis sativus L. HOM05D006587 ORTHO05D008487 7.0e-124 448.0 299 72.2
CANSAT78G1956 Cannabis sativa HOM05D006587 ORTHO05D008487 9.1e-124 447.6 357 64.7
Lj5g0006939 Lotus japonicus HOM05D006587 ORTHO05D008487 1.2e-123 447.2 356 64.0
Phvul.007G053900 Phaseolus vulgaris HOM05D006587 ORTHO05D008487 1.2e-123 447.2 304 71.7
RcHm_v2.0_Chr4g0417131 Rosa chinensis HOM05D006587 ORTHO05D008487 2.0e-123 446.4 356 67.7
HanXRQChr13g0400281 Helianthus annuus HOM05D006587 ORTHO05D008487 3.5e-123 445.7 359 64.6
TWI73G1280 Tripterygium wilfordii HOM05D006587 ORTHO05D008487 3.5e-123 445.7 354 65.8
Eucgr.H03560 Eucalyptus grandis HOM05D006587 ORTHO05D008487 1.0e-122 444.1 305 72.5
PSO170G4636 Papaver somniferum HOM05D006587 ORTHO05D008487 1.7e-122 443.4 352 63.4
ClCG05G005300 Citrullus lanatus HOM05D006587 ORTHO05D008487 2.2e-122 443.0 299 71.6
FAN12G2172 Fragaria x ananassa HOM05D006587 ORTHO05D006391 2.2e-122 443.0 353 67.1
CAN.G69.11 Capsicum annuum HOM05D006587 ORTHO05D008487 3.8e-122 442.2 368 63.6
Sed0010167 Sechium edule HOM05D006587 ORTHO05D008487 5.0e-122 441.8 301 72.1
Lalb_Chr06g0164781 Lupinus albus HOM05D006587 ORTHO05D008487 8.5e-122 441.0 353 64.3
PGSC0003DMG400008999 Solanum tuberosum HOM05D006587 ORTHO05D008487 8.5e-122 441.0 390 60.5
Psat6g209880 Pisum sativum HOM05D006587 ORTHO05D008487 4.2e-121 438.7 359 63.2
Sp6g25120 Schrenkiella parvula HOM05D006587 ORTHO05D008487 4.2e-121 438.7 300 72.7
AL6G30780 Arabidopsis lyrata HOM05D006587 ORTHO05D008487 1.2e-120 437.2 301 72.1
AT5G19300 Arabidopsis thaliana HOM05D006587 ORTHO05D008487 2.1e-120 436.4 301 72.4
BcaB08g36587 Brassica carinata HOM05D006587 ORTHO05D008487 2.1e-120 436.4 300 71.3
BraA10t44108Z Brassica rapa HOM05D006587 ORTHO05D008487 2.1e-120 436.4 301 71.4
arahy.Tifrunner.gnm1.ann1.HZWC9V Arachis hypogaea HOM05D006587 ORTHO05D008487 3.6e-120 435.6 302 71.5
CARHR193670 Cardamine hirsuta HOM05D006587 ORTHO05D008487 4.7e-120 435.3 300 73.7
arahy.Tifrunner.gnm1.ann1.G9UJER Arachis hypogaea HOM05D006587 ORTHO05D008487 6.1e-120 434.9 302 71.5
DCAR_002398 Daucus carota HOM05D006587 ORTHO05D008487 1.4e-119 433.7 303 71.0
Sabra08G0113900 Salix brachista HOM05D006587 ORTHO05D008487 1.4e-119 433.7 295 73.2
A10p20380 Brassica napus HOM05D006587 ORTHO05D008487 2.3e-119 433.0 301 72.1
TPR.G5533 Trifolium pratense HOM05D006587 ORTHO05D008487 3.0e-119 432.6 355 62.0
Thhalv10013731m.g Eutrema salsugineum HOM05D006587 ORTHO05D008487 4.0e-119 432.2 300 71.7
Ca_10966_v3 Cicer arietinum L. HOM05D006587 ORTHO05D008487 5.2e-119 431.8 305 67.9
Medtr1g105065 Medicago truncatula HOM05D006587 ORTHO05D008487 5.2e-119 431.8 358 61.7
BolC9t58560H Brassica oleracea HOM05D006587 ORTHO05D008487 6.7e-119 431.4 305 70.2
Lsat_1_v5_gn_9_80941 Lactuca sativa HOM05D006587 ORTHO05D008487 8.8e-119 431.0 350 65.1
BcaC04g18580 Brassica carinata HOM05D006587 ORTHO05D008487 1.2e-118 430.6 305 70.2
C09p56970 Brassica napus HOM05D006587 ORTHO05D008487 1.2e-118 430.6 305 70.2
Carub.0006s1763 Capsella rubella HOM05D006587 ORTHO05D008487 2.0e-118 429.9 301 71.1
Aa31LG11G10390 Aethionema arabicum HOM05D006587 ORTHO05D008487 1.7e-117 426.8 304 69.7
Ah.13g074000 Amaranthus hybridus HOM05D006587 ORTHO05D008487 2.8e-117 426.0 307 68.4
MBI17_g12493_MAGBIO Magnolia biondii HOM05D006587 ORTHO05D008487 1.6e-115 420.2 281 71.9
EL10As3g23313 Beta vulgaris HOM05D006587 ORTHO05D008487 2.7e-115 419.5 303 68.0
Os04g0244500 Oryza sativa ssp. japonica HOM05D006587 ORTHO05D008487 2.7e-115 419.5 312 66.7
HPP92_010726 Vanilla planifolia HOM05D006587 ORTHO05D008487 4.5e-115 418.7 309 67.6
Hma1.2p1_0511F.1_g168950 Hydrangea macrophylla HOM05D006587 ORTHO05D008487 1.0e-114 417.5 287 71.8
FAN17G1856 Fragaria x ananassa HOM05D000104 ORTHO05D006391 1.3e-114 417.2 361 63.2
FAN22G2243 Fragaria x ananassa HOM05D000104 ORTHO05D006391 2.2e-114 416.4 289 72.3
Haze_00934 Corylus avellana HOM05D006587 ORTHO05D008487 1.1e-113 414.1 362 63.0
Peaxi162Scf01336g00122 Petunia axillaris HOM05D006587 ORTHO05D008487 1.5e-113 413.7 355 63.1
Potri.010G091400 Populus trichocarpa HOM05D006587 ORTHO05D008487 1.0e-111 407.5 364 60.7
Dinv44504 Davidia involucrata HOM05D006587 ORTHO05D008487 7.5e-110 401.4 245 78.8
Dinv38415 Davidia involucrata HOM05D006587 ORTHO05D008487 1.4e-108 397.1 268 75.4
Nitab4.5_0000180g0030 Nicotiana tabacum HOM05D006587 ORTHO05D008487 3.5e-107 392.5 365 58.9
Aqoxy2G03329 Aquilegia oxysepala HOM05D006587 ORTHO05D008487 2.3e-106 389.8 303 64.4
unitig_899.g15640 Utricularia gibba HOM05D006587 ORTHO05D008487 7.8e-99 364.8 315 60.6
Lj3A741G38 Lonicera japonica HOM05D006587 ORTHO05D008487 1.0e-98 364.4 289 65.4
AUR62043415 Chenopodium quinoa HOM05D006587 ORTHO05D008487 3.9e-98 362.5 264 65.9
ATR0626G244 Amborella trichopoda HOM05D006587 ORTHO05D008487 1.8e-95 353.6 288 62.8
Cpa.g.sc147.29 Carica papaya HOM05D006587 ORTHO05D008487 1.5e-94 350.5 285 64.9
QL06p003535 Quercus lobata HOM05D006587 ORTHO05D008487 6.4e-93 345.1 246 69.1
Pp3c7_20660 Physcomitrium patens HOM05D006587 ORTHO05D008487 3.6e-88 329.3 351 51.9
Sabra10G0051900 Salix brachista HOM05D006587 ORTHO05D008487 8.0e-88 328.2 300 56.3
SMO364G0578 Selaginella moellendorffii HOM05D006587 ORTHO05D008487 8.0e-88 328.2 308 55.8
Mapoly0049s0075 Marchantia polymorpha HOM05D006587 ORTHO05D008487 3.1e-87 326.2 306 53.6
Duzib151G0305 Durio zibethinus HOM05D006587 ORTHO05D008487 4.0e-79 299.3 306 54.9
Aqoxy2G03328 Aquilegia oxysepala HOM05D006587 ORTHO05D008487 4.3e-73 279.3 350 50.6
PRCOL_00002662 Prasinoderma coloniale HOM05D006587 ORTHO05D008487 1.2e-72 277.7 331 46.2
Zm00001eb373340 Zea mays HOM05D006587 ORTHO05D008487 1.3e-69 267.7 207 66.2
Oeu040660.1 Olea europaea HOM05D006587 ORTHO05D008487 4.9e-69 265.8 201 70.1
AUR62038173 Chenopodium quinoa HOM05D006587 ORTHO05D008487 8.4e-69 265.0 281 50.5
CSS0022730 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 3.3e-65 253.1 262 54.2
CSS0044999 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 1.5e-62 244.2 239 55.6
FvH4_4g14960 Fragaria vesca HOM05D006587 ORTHO05D008487 8.4e-61 238.4 168 73.8
CDE05G0907 Ceratophyllum demersum HOM05D006587 ORTHO05D008487 3.3e-57 226.5 207 58.0
Cfa024389 Carpinus fangiana HOM05D006587 ORTHO05D008487 6.4e-53 212.2 373 37.8
AagrBONN_evm.TU.Sc2ySwM_340.504 Anthoceros agrestis HOM05D006587 ORTHO05D008487 1.0e-45 188.3 181 56.4
Glyma.10G250600 Glycine max HOM05D006587 ORTHO05D008487 1.4e-44 184.5 123 74.0
Cre16.g670617 Chlamydomonas reinhardtii HOM05D006587 ORTHO05D008487 3.2e-44 183.3 365 34.2
COL.COLO4_06205 Corchorus olitorius HOM05D006587 ORTHO05D008487 1.8e-39 167.5 229 44.1
Lalb_Chr02g0144661 Lupinus albus HOM05D006587 ORTHO05D008487 2.4e-39 167.2 179 50.8
QL06p003531 Quercus lobata HOM05D006587 ORTHO05D008487 4.3e-25 119.8 74 75.7
Lalb_Chr02g0144651 Lupinus albus HOM05D006587 ORTHO05D008487 4.8e-16 89.7 62 66.1
Lsat_1_v5_gn_9_31900 Lactuca sativa HOM05D006587 ORTHO05D011576 2.1e-11 74.3 55 61.8
TAR362G0446 Trochodendron aralioides HOM05D006587 ORTHO05D008487 2.7e-11 73.9 44 84.1
PSO151G0052 Papaver somniferum HOM05D004736 ORTHO05D030424 6.1e-11 72.8 76 53.9
SEGI_15408 Sequoiadendron giganteum HOM05D006587 ORTHO05D008487 2.3e-10 70.9 45 64.4
AUR62038172 Chenopodium quinoa HOM05D006503 ORTHO05D008116 3.9e-10 70.1 103 38.8
arahy.Tifrunner.gnm1.ann1.Y836FI Arachis hypogaea HOM05D000158 ORTHO05D000197 9.7e-09 65.5 39 71.8
Gorai.012G092500 Gossypium raimondii HOM05D006587 ORTHO05D008487 9.7e-09 65.5 47 63.8
SEGI_20820 Sequoiadendron giganteum HOM05D006587 ORTHO05D008487 8.2e-08 62.4 72 51.4
Gorai.004G106600 Gossypium raimondii HOM05D006587 ORTHO05D008487 5.3e-07 59.7 68 51.5


User provided reference genes

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