Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.24710 Avicennia marina HOM05D005575 ORTHO05D007355 2.5e-262 908.3 485 100.0
SalBow3G3314 Salvia bowleyana HOM05D005575 ORTHO05D007355 8.3e-229 797.0 468 88.5
Oeu064221.1 Olea europaea HOM05D005575 ORTHO05D007355 1.9e-217 759.2 484 82.4
SGA_v2.0_scaffold79G25614 Striga asiatica HOM05D005575 ORTHO05D007355 8.0e-216 753.8 469 84.4
Migut.N00227 Erythranthe guttata HOM05D005575 ORTHO05D007355 5.2e-207 724.5 470 83.0
Cc03_g04530 Coffea canephora HOM05D005575 ORTHO05D007355 1.3e-205 719.9 467 80.1
Nitab4.5_0012347g0010 Nicotiana tabacum HOM05D005575 ORTHO05D007355 6.4e-205 717.6 468 78.0
GSVIVG01018083001 Vitis vinifera HOM05D005575 ORTHO05D007355 2.4e-204 715.7 468 81.4
Peaxi162Scf00788g00114 Petunia axillaris HOM05D005575 ORTHO05D007355 3.5e-203 711.8 468 78.4
Actinidia08453 Actinidia chinensis HOM05D005575 ORTHO05D007355 4.6e-203 711.4 468 77.8
Dinv44604 Davidia involucrata HOM05D005575 ORTHO05D007355 5.0e-202 708.0 468 78.8
Nitab4.5_0000941g0050 Nicotiana tabacum HOM05D005575 ORTHO05D007355 5.0e-202 708.0 468 80.1
Cfa008407 Carpinus fangiana HOM05D005575 ORTHO05D007355 6.2e-200 701.0 468 76.9
ECA240G2677 Erigeron canadensis HOM05D005575 ORTHO05D007355 1.5e-198 696.4 467 76.9
Peaxi162Scf00467g00914 Petunia axillaris HOM05D005575 ORTHO05D007355 2.6e-198 695.7 473 77.2
Nn3g19479 Nelumbo nucifera HOM05D005575 ORTHO05D007355 3.4e-198 695.3 468 77.8
Dinv14070 Davidia involucrata HOM05D005575 ORTHO05D007355 9.9e-198 693.7 468 76.5
PGSC0003DMG401006082 Solanum tuberosum HOM05D005575 ORTHO05D007355 1.3e-197 693.3 467 77.3
Haze_11258 Corylus avellana HOM05D005575 ORTHO05D007355 4.9e-197 691.4 468 75.9
PGSC0003DMG400013391 Solanum tuberosum HOM05D005575 ORTHO05D007355 4.9e-197 691.4 468 78.6
Nitab4.5_0000977g0090 Nicotiana tabacum HOM05D005575 ORTHO05D007355 3.2e-196 688.7 448 81.5
Solyc03g005310.4 Solanum lycopersicum HOM05D005575 ORTHO05D007355 7.1e-196 687.6 468 78.0
Solyc09g083000.3 Solanum lycopersicum HOM05D005575 ORTHO05D007355 7.1e-196 687.6 467 76.9
CSS0022244 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 9.2e-196 687.2 467 75.4
Sopen03g001350 Solanum pennellii HOM05D005575 ORTHO05D007355 9.2e-196 687.2 468 78.0
Sopen09g031870 Solanum pennellii HOM05D005575 ORTHO05D007355 9.2e-196 687.2 467 77.7
TWI53G0136 Tripterygium wilfordii HOM05D005575 ORTHO05D007355 2.1e-195 686.0 468 76.5
CSS0045755 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 2.7e-195 685.6 467 75.2
Manes.03G170700 Manihot esculenta HOM05D005575 ORTHO05D007355 3.0e-194 682.2 468 76.1
Migut.G00397 Erythranthe guttata HOM05D005575 ORTHO05D007355 5.1e-194 681.4 468 76.3
CANSAT78G2185 Cannabis sativa HOM05D005575 ORTHO05D007355 8.6e-194 680.6 468 74.8
CiPaw.01G193100 Carya illinoinensis HOM05D005575 ORTHO05D007355 1.5e-193 679.9 468 74.8
QL06p000355 Quercus lobata HOM05D005575 ORTHO05D007355 5.6e-193 677.9 468 77.4
Eucgr.H03187 Eucalyptus grandis HOM05D005575 ORTHO05D007355 1.6e-192 676.4 468 74.1
Nitab4.5_0003815g0070 Nicotiana tabacum HOM05D005575 ORTHO05D007355 1.6e-192 676.4 448 81.0
CSS0047423 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 2.1e-192 676.0 469 77.4
Prupe.1G025500 Prunus persica HOM05D005575 ORTHO05D007355 1.4e-191 673.3 474 76.2
Potri.008G159900 Populus trichocarpa HOM05D005575 ORTHO05D007355 5.2e-191 671.4 467 76.0
CAN.G749.16 Capsicum annuum HOM05D005575 ORTHO05D007355 3.4e-190 668.7 422 80.1
Thecc.04G242000 Theobroma cacao HOM05D005575 ORTHO05D007355 3.4e-190 668.7 468 73.5
Manes.15G034800 Manihot esculenta HOM05D005575 ORTHO05D007355 4.4e-190 668.3 468 73.9
HanXRQChr13g0423561 Helianthus annuus HOM05D005575 ORTHO05D007355 5.8e-190 667.9 467 73.9
Ca_01767_v3 Cicer arietinum L. HOM05D005575 ORTHO05D007355 7.6e-190 667.5 468 73.3
MELO3C006485.2 Cucumis melo HOM05D005575 ORTHO05D007355 1.3e-189 666.8 468 73.7
TWI09G0420 Tripterygium wilfordii HOM05D005575 ORTHO05D007355 1.7e-189 666.4 467 74.5
Lalb_Chr01g0020841 Lupinus albus HOM05D005575 ORTHO05D007355 4.9e-189 664.8 469 74.2
VMungo0720G2094 Vigna mungo HOM05D005575 ORTHO05D007355 1.1e-188 663.7 470 75.3
Lsat_1_v5_gn_3_124080 Lactuca sativa HOM05D005575 ORTHO05D007355 1.4e-188 663.3 462 74.9
Phvul.007G279400 Phaseolus vulgaris HOM05D005575 ORTHO05D007355 1.9e-188 662.9 468 75.0
Lj6g0016373 Lotus japonicus HOM05D005575 ORTHO05D007355 4.1e-188 661.8 469 76.5
Psat6g136600 Pisum sativum HOM05D005575 ORTHO05D007355 7.1e-188 661.0 468 74.1
Gohir.A10G117000 Gossypium hirsutum HOM05D005575 ORTHO05D007355 1.2e-187 660.2 469 74.2
PSO461G0077 Papaver somniferum HOM05D005575 ORTHO05D007355 1.2e-187 660.2 468 73.7
Rhsim02G0032000 Rhododendron simsii HOM05D005575 ORTHO05D007355 1.2e-187 660.2 466 74.5
Duzib052G1036 Durio zibethinus HOM05D005575 ORTHO05D007355 2.1e-187 659.4 469 72.9
COL.COLO4_26929 Corchorus olitorius HOM05D005575 ORTHO05D007355 2.7e-187 659.1 468 73.7
CsaV3_3G012740 Cucumis sativus L. HOM05D005575 ORTHO05D007355 2.7e-187 659.1 468 73.1
Sed0020385 Sechium edule HOM05D005575 ORTHO05D007355 2.7e-187 659.1 467 72.2
Glyma.02G001600 Glycine max HOM05D005575 ORTHO05D007355 3.5e-187 658.7 468 73.5
Ciclev10004932m.g Citrus clementina HOM05D005575 ORTHO05D007355 6.0e-187 657.9 416 79.3
Medtr1g041115 Medicago truncatula HOM05D005575 ORTHO05D007355 6.0e-187 657.9 468 72.6
COL.COLO4_13167 Corchorus olitorius HOM05D005575 ORTHO05D007355 7.8e-187 657.5 468 72.4
EL10Ac8g19543 Beta vulgaris HOM05D005575 ORTHO05D007355 1.0e-186 657.1 514 67.7
PSO210G5698 Papaver somniferum HOM05D005575 ORTHO05D007355 1.0e-186 657.1 468 73.3
Sabra08G0121800 Salix brachista HOM05D005575 ORTHO05D007355 1.0e-186 657.1 494 71.7
arahy.Tifrunner.gnm1.ann1.0U5UXQ Arachis hypogaea HOM05D005575 ORTHO05D007355 3.9e-186 655.2 468 75.9
arahy.Tifrunner.gnm1.ann1.XPT1GW Arachis hypogaea HOM05D005575 ORTHO05D007355 3.9e-186 655.2 474 75.1
MD16G1218200 Malus domestica HOM05D005575 ORTHO05D007355 3.9e-186 655.2 427 78.5
Glyma.10G001900 Glycine max HOM05D005575 ORTHO05D007355 5.1e-186 654.8 468 74.8
Gorai.011G167300 Gossypium raimondii HOM05D005575 ORTHO05D007355 5.1e-186 654.8 468 73.9
Hund21566 Selenicereus undatus HOM05D005575 ORTHO05D007355 6.6e-186 654.4 483 70.4
ClCG05G004730 Citrullus lanatus HOM05D005575 ORTHO05D007355 8.6e-186 654.1 468 73.1
PGR004G2878 Punica granatum HOM05D005575 ORTHO05D007355 1.9e-185 652.9 468 72.6
Gohir.D10G150300 Gossypium hirsutum HOM05D005575 ORTHO05D007355 2.5e-185 652.5 469 73.8
MD13G1203000 Malus domestica HOM05D005575 ORTHO05D007355 1.2e-184 650.2 427 77.8
Atru.chr4.2312 Acer truncatum HOM05D005575 ORTHO05D007355 3.6e-184 648.7 421 77.2
TPR.G32768 Trifolium pratense HOM05D005575 ORTHO05D007355 5.2e-183 644.8 448 74.1
Duzib151G0571 Durio zibethinus HOM05D005575 ORTHO05D007355 1.2e-182 643.7 467 71.9
AUR62034661 Chenopodium quinoa HOM05D005575 ORTHO05D007355 3.4e-182 642.1 419 76.1
Rhsim04G0195700 Rhododendron simsii HOM05D005575 ORTHO05D007355 5.8e-182 641.3 496 70.2
unitig_62.g23259 Utricularia gibba HOM05D005575 ORTHO05D007355 1.7e-181 639.8 451 74.1
DCAR_030703 Daucus carota HOM05D005575 ORTHO05D007355 4.2e-180 635.2 424 73.3
Cpa.g.sc58.3 Carica papaya HOM05D005575 ORTHO05D007355 7.1e-180 634.4 434 75.1
SGA_v2.0_scaffold101G29757 Striga asiatica HOM05D005575 ORTHO05D007355 9.3e-180 634.0 468 72.4
RcHm_v2.0_Chr4g0388931 Rosa chinensis HOM05D005575 ORTHO05D007355 3.0e-178 629.0 469 71.2
BcaB06g26421 Brassica carinata HOM05D005575 ORTHO05D007355 1.9e-177 626.3 467 69.0
Sc25g0004210 Simmondsia chinensis HOM05D005575 ORTHO05D007355 1.9e-177 626.3 469 71.4
Aa31LG8G9490 Aethionema arabicum HOM05D005575 ORTHO05D007355 6.2e-176 621.3 467 68.5
vmacro08393 Vaccinium macrocarpon HOM05D005575 ORTHO05D007355 8.1e-176 620.9 398 77.1
Thhalv10020692m.g Eutrema salsugineum HOM05D005575 ORTHO05D007355 1.1e-175 620.5 467 68.5
C05p40000 Brassica napus HOM05D005575 ORTHO05D007355 2.4e-175 619.4 469 68.2
BcaC05g27989 Brassica carinata HOM05D005575 ORTHO05D007355 4.0e-175 618.6 467 68.3
BolC5t32746H Brassica oleracea HOM05D005575 ORTHO05D007355 4.0e-175 618.6 467 68.3
AL3G37400 Arabidopsis lyrata HOM05D005575 ORTHO05D007355 2.6e-174 615.9 467 69.6
CARHR098930 Cardamine hirsuta HOM05D005575 ORTHO05D007355 5.8e-174 614.8 467 67.0
Sp3g20680 Schrenkiella parvula HOM05D005575 ORTHO05D007355 5.8e-174 614.8 467 67.7
FvH4_4g01960 Fragaria vesca HOM05D005575 ORTHO05D007355 7.6e-174 614.4 468 69.4
AT3G22990 Arabidopsis thaliana HOM05D005575 ORTHO05D007355 2.2e-173 612.8 467 68.5
A05p25710 Brassica napus HOM05D005575 ORTHO05D007355 1.4e-172 610.1 470 67.7
Carub.0003s2315 Capsella rubella HOM05D005575 ORTHO05D007355 1.9e-172 609.8 467 68.3
BraA05t21452Z Brassica rapa HOM05D005575 ORTHO05D007355 3.2e-172 609.0 468 67.7
FAN22G1081 Fragaria x ananassa HOM05D005575 ORTHO05D007355 7.1e-172 607.8 468 68.8
ATR0665G105 Amborella trichopoda HOM05D005575 ORTHO05D007355 1.6e-168 596.7 447 67.6
FAN17G2264 Fragaria x ananassa HOM05D005575 ORTHO05D007355 2.1e-168 596.3 490 65.5
Os07g0609766 Oryza sativa ssp. japonica HOM05D005575 ORTHO05D007355 2.8e-168 595.9 445 70.1
HPP92_006286 Vanilla planifolia HOM05D005575 ORTHO05D007355 9.0e-167 590.9 468 66.2
AUR62008592 Chenopodium quinoa HOM05D005575 ORTHO05D007355 3.8e-165 585.5 398 74.9
vmacro15397 Vaccinium macrocarpon HOM05D005575 ORTHO05D007355 6.4e-165 584.7 415 73.5
Zm00001eb183490 Zea mays HOM05D005575 ORTHO05D007355 8.4e-165 584.3 460 66.5
SEGI_28733 Sequoiadendron giganteum HOM05D005575 ORTHO05D007355 2.7e-163 579.3 423 68.6
Lj3A720G71 Lonicera japonica HOM05D005575 ORTHO05D007355 4.8e-144 515.4 318 81.8
Mapoly0008s0256 Marchantia polymorpha HOM05D005575 ORTHO05D007355 9.1e-135 484.6 399 60.9
SMO230G0018 Selaginella moellendorffii HOM05D005575 ORTHO05D007355 3.8e-133 479.2 416 59.1
FAN12G1274 Fragaria x ananassa HOM05D005575 ORTHO05D007355 6.5e-133 478.4 383 67.9
AagrBONN_evm.TU.Sc2ySwM_117.635 Anthoceros agrestis HOM05D005575 ORTHO05D007355 2.0e-126 456.8 402 56.5
Pp3c9_410 Physcomitrium patens HOM05D005575 ORTHO05D007355 4.1e-119 432.6 464 53.2
Pp3c15_1060 Physcomitrium patens HOM05D005575 ORTHO05D007355 2.3e-106 390.2 405 55.1
SHI00566 Sapria himalayana HOM05D005575 ORTHO05D007355 6.8e-98 362.1 274 66.4
CBR_g10806 Chara braunii HOM05D005575 ORTHO05D007355 2.0e-97 360.5 535 39.1
Nn1g02522 Nelumbo nucifera HOM05D005575 ORTHO05D007355 4.9e-96 355.9 270 71.1
Actinidia05473 Actinidia chinensis HOM05D005575 ORTHO05D007355 1.7e-77 294.3 188 77.7
BcaC05g25996 Brassica carinata HOM05D005575 ORTHO05D007355 4.4e-65 253.1 274 53.3
BolC5t30651H Brassica oleracea HOM05D005575 ORTHO05D007355 1.4e-55 221.5 261 49.0
C05p19490 Brassica napus HOM05D005575 ORTHO05D007355 1.9e-55 221.1 261 49.0
TAR365G1190 Trochodendron aralioides HOM05D005575 ORTHO05D007355 5.1e-53 213.0 207 58.5
SHI00565 Sapria himalayana HOM05D005575 ORTHO05D007355 6.2e-43 179.5 167 61.1
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 1.3e-40 171.8 145 60.7
TAR365G1076 Trochodendron aralioides HOM05D005575 ORTHO05D007355 4.9e-40 169.9 126 73.8
C08p25570 Brassica napus HOM05D005575 ORTHO05D027690 1.1e-39 168.7 146 61.0
BolC8t50179H Brassica oleracea HOM05D005575 ORTHO05D027690 1.0e-32 145.6 123 61.8
AagrBONN_evm.TU.Sc2ySwM_344.3391 Anthoceros agrestis HOM05D005575 ORTHO05D007355 8.5e-32 142.5 391 29.9
BcaC07g39513 Brassica carinata HOM05D005575 ORTHO05D027690 6.1e-22 109.8 60 86.7
SalBow3G4542 Salvia bowleyana HOM05D005575 ORTHO05D007355 1.8e-18 98.2 57 87.7
Sabra10G0062800 Salix brachista HOM05D005575 ORTHO05D027690 6.1e-14 83.2 69 69.6
Psat7g122560 Pisum sativum HOM05D005575 ORTHO05D007355 2.3e-13 81.3 59 64.4
Cc06_g23150 Coffea canephora HOM05D005575 ORTHO05D007355 9.1e-10 69.3 69 59.4


User provided reference genes

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