Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.24335 Avicennia marina HOM05D004452 ORTHO05D005358 0.0e+00 1573.5 823 100.0
Migut.N02714 Erythranthe guttata HOM05D004452 ORTHO05D005358 0.0e+00 1211.1 812 76.2
Oeu043579.4 Olea europaea HOM05D004452 ORTHO05D005358 0.0e+00 1121.7 808 70.5
CSS0026728 Camellia sinensis var. sinensis HOM05D004452 ORTHO05D005358 0.0e+00 1077.8 811 68.7
SGA_v2.0_scaffold28G11777 Striga asiatica HOM05D004452 ORTHO05D005358 0.0e+00 1075.5 794 72.4
Cc10_g04060 Coffea canephora HOM05D004452 ORTHO05D005358 0.0e+00 1075.1 808 67.8
Actinidia23285 Actinidia chinensis HOM05D004452 ORTHO05D005358 2.0e-304 1048.9 808 67.6
Lj4A59T44 Lonicera japonica HOM05D004452 ORTHO05D005358 4.3e-302 1041.2 810 66.7
CAN.G1030.10 Capsicum annuum HOM05D004452 ORTHO05D005358 8.3e-298 1026.9 810 67.5
vmacro21515 Vaccinium macrocarpon HOM05D004452 ORTHO05D005358 7.1e-297 1023.8 811 66.8
GSVIVG01009484001 Vitis vinifera HOM05D004452 ORTHO05D005358 9.2e-297 1023.5 780 66.8
Nitab4.5_0000287g0200 Nicotiana tabacum HOM05D004452 ORTHO05D005358 6.0e-296 1020.8 810 67.5
Nitab4.5_0002760g0030 Nicotiana tabacum HOM05D004452 ORTHO05D005358 6.0e-296 1020.8 810 67.2
Rhsim06G0050800 Rhododendron simsii HOM05D004452 ORTHO05D005358 6.0e-296 1020.8 810 65.7
PGSC0003DMG400007967 Solanum tuberosum HOM05D004452 ORTHO05D005358 6.0e-296 1020.8 809 67.4
Dinv39307 Davidia involucrata HOM05D004452 ORTHO05D005358 3.3e-294 1015.0 811 66.0
Solyc04g078830.3 Solanum lycopersicum HOM05D004452 ORTHO05D005358 4.3e-294 1014.6 815 66.5
TAR381G1434 Trochodendron aralioides HOM05D004452 ORTHO05D005358 2.1e-285 985.7 807 63.7
Duzib093G1704 Durio zibethinus HOM05D004452 ORTHO05D005358 3.4e-283 978.4 791 64.3
TWI36G0852 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 1.7e-282 976.1 790 65.6
QL02p004676 Quercus lobata HOM05D004452 ORTHO05D005358 2.2e-282 975.7 797 64.2
Thecc.08G005800 Theobroma cacao HOM05D004452 ORTHO05D005358 3.8e-282 974.9 791 64.0
Ciclev10000290m.g Citrus clementina HOM05D004452 ORTHO05D005358 1.1e-281 973.4 791 63.5
CiPaw.15G055600 Carya illinoinensis HOM05D004452 ORTHO05D005358 9.3e-281 970.3 791 63.1
Peaxi162Scf00252g00221 Petunia axillaris HOM05D004452 ORTHO05D005358 9.3e-281 970.3 811 64.9
Cfa018088 Carpinus fangiana HOM05D004452 ORTHO05D005358 1.2e-280 969.9 801 62.7
Prupe.1G434400 Prunus persica HOM05D004452 ORTHO05D005358 3.5e-280 968.4 791 63.5
Manes.18G038000 Manihot esculenta HOM05D004452 ORTHO05D005358 1.0e-279 966.8 790 64.6
Nn5g30286 Nelumbo nucifera HOM05D004452 ORTHO05D005358 1.3e-279 966.5 797 62.1
COL.COLO4_26520 Corchorus olitorius HOM05D004452 ORTHO05D005358 2.1e-277 959.1 792 63.6
DCAR_019448 Daucus carota HOM05D004452 ORTHO05D005358 1.4e-276 956.4 809 63.4
Potri.014G028100 Populus trichocarpa HOM05D004452 ORTHO05D005358 3.1e-276 955.3 809 62.4
Sabra14G0019200 Salix brachista HOM05D004452 ORTHO05D005358 2.6e-275 952.2 811 61.5
TWI56G0235 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 3.4e-275 951.8 791 64.3
Gohir.D05G206300 Gossypium hirsutum HOM05D004452 ORTHO05D005358 2.9e-274 948.7 764 64.4
MD15G1081700 Malus domestica HOM05D004452 ORTHO05D005358 1.1e-273 946.8 795 62.5
RcHm_v2.0_Chr6g0308041 Rosa chinensis HOM05D004452 ORTHO05D005358 1.6e-272 943.0 792 62.5
Atru.chr13.704 Acer truncatum HOM05D004452 ORTHO05D005358 1.0e-271 940.3 791 62.1
Gorai.009G212700 Gossypium raimondii HOM05D004452 ORTHO05D005358 1.9e-270 936.0 764 64.1
ClCG05G019920 Citrullus lanatus HOM05D004452 ORTHO05D005358 2.5e-270 935.6 805 60.4
FAN27G2914 Fragaria x ananassa HOM05D004452 ORTHO05D005358 1.3e-269 933.3 792 63.3
FAN15G1326 Fragaria x ananassa HOM05D004452 ORTHO05D005358 3.6e-269 931.8 792 63.1
FvH4_2g34320 Fragaria vesca HOM05D004452 ORTHO05D005358 1.8e-268 929.5 792 62.6
FAN20G1510 Fragaria x ananassa HOM05D004452 ORTHO05D005358 2.4e-268 929.1 792 63.0
HanXRQChr02g0039511 Helianthus annuus HOM05D004452 ORTHO05D005358 5.3e-268 927.9 813 62.2
MELO3C016756.2 Cucumis melo HOM05D004452 ORTHO05D005358 4.5e-267 924.9 805 59.9
Lsat_1_v5_gn_1_21181 Lactuca sativa HOM05D004452 ORTHO05D005358 2.2e-266 922.5 820 60.0
Cpa.g.sc49.27 Carica papaya HOM05D004452 ORTHO05D005358 6.4e-266 921.0 791 61.7
FAN24G0195 Fragaria x ananassa HOM05D004452 ORTHO05D005358 2.1e-264 916.0 841 59.6
ECA247G0253 Erigeron canadensis HOM05D004452 ORTHO05D005358 6.0e-264 914.4 820 61.7
MBI06_g02568_MAGBIO Magnolia biondii HOM05D004452 ORTHO05D005358 7.9e-264 914.1 802 60.1
CANSAT11G1000 Cannabis sativa HOM05D004452 ORTHO05D005358 3.0e-263 912.1 792 61.7
Hma1.2p1_2046F.1_g312410 Hydrangea macrophylla HOM05D004452 ORTHO05D005358 3.9e-263 911.8 826 60.2
CsaV3_4G034360 Cucumis sativus L. HOM05D004452 ORTHO05D005358 8.7e-263 910.6 799 59.4
Eucgr.F02336 Eucalyptus grandis HOM05D004452 ORTHO05D005358 4.3e-262 908.3 780 62.9
THA.LOC104822853 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 8.1e-261 904.0 790 61.1
PGR031G1897 Punica granatum HOM05D004452 ORTHO05D005358 1.5e-259 899.8 795 60.9
Sed0009272 Sechium edule HOM05D004452 ORTHO05D005358 2.6e-259 899.0 791 59.7
Aqoxy5G01224 Aquilegia oxysepala HOM05D004452 ORTHO05D005358 2.2e-258 896.0 805 58.9
Sc15g0006090 Simmondsia chinensis HOM05D004452 ORTHO05D005358 2.2e-258 896.0 797 59.0
PSO170G2588 Papaver somniferum HOM05D004452 ORTHO05D005358 1.6e-256 889.8 812 58.9
Glyma.04G039400 Glycine max HOM05D004452 ORTHO05D005358 1.0e-255 887.1 800 60.0
Lalb_Chr11g0062611 Lupinus albus HOM05D004452 ORTHO05D005358 3.9e-255 885.2 818 59.0
Glyma.06G040600 Glycine max HOM05D004452 ORTHO05D005358 1.9e-254 882.9 808 58.5
PSO210G0441 Papaver somniferum HOM05D004452 ORTHO05D005358 2.5e-254 882.5 812 58.5
arahy.Tifrunner.gnm1.ann1.UAD7VL Arachis hypogaea HOM05D004452 ORTHO05D005358 7.4e-254 880.9 788 60.9
SalBow8G0374 Salvia bowleyana HOM05D004452 ORTHO05D005358 1.3e-253 880.2 651 71.7
SalBow8G3632 Salvia bowleyana HOM05D004452 ORTHO05D005358 3.7e-253 878.6 651 71.6
VMungo1309G1308 Vigna mungo HOM05D004452 ORTHO05D005358 3.7e-253 878.6 809 59.8
arahy.Tifrunner.gnm1.ann1.Y5ZCTQ Arachis hypogaea HOM05D004452 ORTHO05D005358 4.8e-253 878.2 794 60.6
Phvul.009G065600 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 2.4e-252 875.9 801 60.0
Medtr3g101790 Medicago truncatula HOM05D004452 ORTHO05D005358 4.5e-251 871.7 793 58.4
Lj1g0004160 Lotus japonicus HOM05D004452 ORTHO05D005358 7.6e-251 870.9 795 58.7
AUR62041892 Chenopodium quinoa HOM05D004452 ORTHO05D005358 2.7e-248 862.4 792 60.5
TPR.G24198 Trifolium pratense HOM05D004452 ORTHO05D005358 6.1e-248 861.3 792 57.8
Hund23866 Selenicereus undatus HOM05D004452 ORTHO05D005358 1.3e-247 860.1 799 59.1
AT5G42920 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 3.3e-246 855.5 788 58.9
Ca_15944_v3 Cicer arietinum L. HOM05D004452 ORTHO05D005358 5.7e-246 854.7 792 57.8
Thhalv10003147m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 1.4e-244 850.1 801 58.2
BcaC06g31738 Brassica carinata HOM05D004452 ORTHO05D005358 3.1e-244 849.0 802 57.9
CARHR181170 Cardamine hirsuta HOM05D004452 ORTHO05D005358 5.3e-244 848.2 802 58.6
Gohir.A05G203100 Gossypium hirsutum HOM05D004452 ORTHO05D005358 5.3e-244 848.2 725 61.8
Carub.0008s0587 Capsella rubella HOM05D004452 ORTHO05D005358 9.0e-244 847.4 788 58.6
AL8G17930 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 3.4e-243 845.5 788 58.5
Sp2g07660 Schrenkiella parvula HOM05D004452 ORTHO05D005358 1.3e-242 843.6 788 58.0
EL10Ac1g01836 Beta vulgaris HOM05D004452 ORTHO05D005358 8.5e-242 840.9 795 60.6
Aa31LG9G12980 Aethionema arabicum HOM05D004452 ORTHO05D005358 1.4e-239 833.6 790 57.1
BcaC02g10792 Brassica carinata HOM05D004452 ORTHO05D005358 7.4e-238 827.8 792 58.8
C04p25060 Brassica napus HOM05D004452 ORTHO05D005358 7.4e-238 827.8 792 58.8
BolC4t24007H Brassica oleracea HOM05D004452 ORTHO05D005358 7.4e-238 827.8 792 58.8
Psat5g042600 Pisum sativum HOM05D004452 ORTHO05D005358 7.4e-238 827.8 774 57.5
A06p48170 Brassica napus HOM05D004452 ORTHO05D005358 2.8e-237 825.9 800 57.6
BraA06t27686Z Brassica rapa HOM05D004452 ORTHO05D005358 2.0e-235 819.7 800 57.5
ATR1126G044 Amborella trichopoda HOM05D004452 ORTHO05D005358 1.3e-229 800.4 820 53.5
Dinv35952 Davidia involucrata HOM05D004452 ORTHO05D005358 1.1e-222 777.3 627 67.6
CDE08G0013 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 7.5e-214 748.0 802 52.1
SHI08268 Sapria himalayana HOM05D004452 ORTHO05D005358 5.0e-210 735.3 789 51.6
Zm00001eb255990 Zea mays HOM05D004452 ORTHO05D005358 2.3e-202 709.9 792 53.5
Sopen04g032430 Solanum pennellii HOM05D004452 ORTHO05D005358 1.4e-183 647.5 569 61.9
CDE04G2017 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 1.7e-181 640.6 641 55.4
Oeu023860.1 Olea europaea HOM05D004452 ORTHO05D005358 4.6e-171 605.9 472 67.6
Mapoly0012s0112 Marchantia polymorpha HOM05D004452 ORTHO05D005358 1.3e-170 604.4 856 45.4
CiPaw.16G042900 Carya illinoinensis HOM05D004452 ORTHO05D005358 3.6e-168 596.3 456 66.7
unitig_749.g13678 Utricularia gibba HOM05D004452 ORTHO05D005358 6.8e-167 592.0 698 49.9
MSTRG.25087 Avicennia marina HOM05D004452 ORTHO05D005358 1.5e-161 574.3 426 71.8
Lalb_Chr08g0245391 Lupinus albus HOM05D004452 ORTHO05D005358 2.2e-157 560.5 466 65.9
CANSAT11G0118 Cannabis sativa HOM05D004452 ORTHO05D005358 2.3e-154 550.4 461 62.5
Sc02g0007190 Simmondsia chinensis HOM05D004452 ORTHO05D005358 6.2e-152 542.3 476 63.4
Glyma.17G241800 Glycine max HOM05D004452 ORTHO05D005358 1.4e-151 541.2 470 60.6
Phvul.001G022500 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 1.4e-151 541.2 469 61.2
THA.LOC104812571 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 2.9e-149 533.5 459 64.1
arahy.Tifrunner.gnm1.ann1.IXK305 Arachis hypogaea HOM05D004452 ORTHO05D005358 1.6e-147 527.7 474 59.3
arahy.Tifrunner.gnm1.ann1.VB8FSW Arachis hypogaea HOM05D004452 ORTHO05D005358 1.6e-147 527.7 474 59.3
Glyma.14G083300 Glycine max HOM05D004452 ORTHO05D005358 3.5e-147 526.6 476 59.2
VMungo0647G1811 Vigna mungo HOM05D004452 ORTHO05D005358 8.7e-146 521.9 493 57.0
unitig_26.g10021 Utricularia gibba HOM05D002518 ORTHO05D002630 4.2e-140 503.1 475 60.0
AUR62038817 Chenopodium quinoa HOM05D004452 ORTHO05D005358 7.9e-139 498.8 510 52.7
Os02g0767100 Oryza sativa ssp. japonica HOM05D004452 ORTHO05D005358 3.0e-138 496.9 455 58.5
Sed0026470 Sechium edule HOM05D004452 ORTHO05D005358 2.4e-135 487.3 456 59.0
Thhalv10011479m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 4.1e-135 486.5 454 57.7
Carub.0001s3568 Capsella rubella HOM05D004452 ORTHO05D005358 5.3e-135 486.1 456 57.2
SMO356G0003 Selaginella moellendorffii HOM05D004452 ORTHO05D005358 5.3e-135 486.1 708 44.9
AT1G45233 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 6.9e-135 485.7 456 57.7
HPP92_016717 Vanilla planifolia HOM05D004452 ORTHO05D005358 5.9e-134 482.6 736 41.7
Sp1g34090 Schrenkiella parvula HOM05D004452 ORTHO05D005358 1.0e-133 481.9 449 56.1
AL1G52910 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 1.7e-133 481.1 455 56.0
AagrBONN_evm.TU.Sc2ySwM_228.4151 Anthoceros agrestis HOM05D004452 ORTHO05D005358 1.2e-126 458.4 740 40.9
CARHR036370 Cardamine hirsuta HOM05D004452 ORTHO05D005358 4.5e-126 456.4 451 55.9
A10p06900 Brassica napus HOM05D004452 ORTHO05D005358 2.2e-125 454.1 464 52.2
BraA10t42942Z Brassica rapa HOM05D004452 ORTHO05D005358 1.4e-124 451.4 463 53.8
Pp3c7_25670 Physcomitrium patens HOM05D004452 ORTHO05D005358 1.9e-124 451.1 769 39.3
Aa31sc108G100 Aethionema arabicum HOM05D004452 ORTHO05D005358 1.3e-120 438.3 478 53.1
C06p01470 Brassica napus HOM05D004452 ORTHO05D005358 1.5e-118 431.4 468 50.9
BcaC08g42910 Brassica carinata HOM05D004452 ORTHO05D005358 3.4e-118 430.3 468 50.6
BolC6t35279H Brassica oleracea HOM05D004452 ORTHO05D005358 1.0e-117 428.7 449 51.4
Nn7g37344 Nelumbo nucifera HOM05D004452 ORTHO05D005358 1.8e-111 407.9 296 72.6
BcaB07g33871 Brassica carinata HOM05D004452 ORTHO05D005358 5.7e-105 386.3 451 48.3
SEGI_30975 Sequoiadendron giganteum HOM05D004452 ORTHO05D005358 7.7e-94 349.4 312 61.5
AagrBONN_evm.TU.Sc2ySwM_117.2784 Anthoceros agrestis HOM05D004452 ORTHO05D005358 4.7e-91 340.1 455 43.1
Potri.002G125300 Populus trichocarpa HOM05D004452 ORTHO05D005358 2.7e-86 324.3 663 37.0
TAR625G1031 Trochodendron aralioides HOM05D004452 ORTHO05D005358 1.5e-84 318.5 259 66.4
Nn3g17073 Nelumbo nucifera HOM05D004452 ORTHO05D005358 8.0e-83 312.8 219 76.3
MD08G1099200 Malus domestica HOM05D004452 ORTHO05D005358 1.4e-79 302.0 197 78.7
SalBow8G2832 Salvia bowleyana HOM05D004452 ORTHO05D005358 2.0e-73 281.6 165 85.5
SalBow8G5418 Salvia bowleyana HOM05D004452 ORTHO05D005358 2.0e-73 281.6 165 85.5
MCO13G423 Micromonas commoda HOM05D004452 ORTHO05D005358 4.6e-62 243.8 752 30.1
CBR_g24409 Chara braunii HOM05D004452 ORTHO05D005358 2.9e-56 224.6 359 39.8
Dinv35953 Davidia involucrata HOM05D004452 ORTHO05D005358 1.3e-48 199.1 147 64.6
Cre17.g705550 Chlamydomonas reinhardtii HOM05D004452 ORTHO05D005358 1.1e-47 196.1 458 32.1
SEGI_02411 Sequoiadendron giganteum HOM05D004452 ORTHO05D000001 1.3e-45 189.1 358 36.3
MD08G1099500 Malus domestica HOM05D004452 ORTHO05D005358 1.6e-43 182.2 140 62.9
MD08G1099300 Malus domestica HOM05D004452 ORTHO05D005358 1.8e-42 178.7 147 59.2
Nn3g18530 Nelumbo nucifera HOM05D004452 ORTHO05D005358 1.5e-25 122.5 155 43.9
Aa31LG7G10550 Aethionema arabicum HOM05D004452 ORTHO05D005358 1.3e-24 119.4 90 60.0
Nn3g18532 Nelumbo nucifera HOM05D004452 ORTHO05D005358 1.7e-24 119.0 155 42.6
Aa31LG7G10540 Aethionema arabicum HOM05D004452 ORTHO05D005358 4.1e-18 97.8 87 64.4
TAR625G1460 Trochodendron aralioides HOM05D004452 ORTHO05D005358 9.3e-15 86.7 96 45.8
Actinidia22636 Actinidia chinensis HOM05D004452 ORTHO05D005358 1.0e-13 83.2 70 52.9
CARHR174670 Cardamine hirsuta HOM05D004452 ORTHO05D005358 8.5e-08 63.5 54 53.7


User provided reference genes

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