Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 0.0e+00 1745.7 909 100.0
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 0.0e+00 1189.1 999 68.4
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 0.0e+00 1076.2 936 66.6
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 7.8e-297 1023.8 937 63.7
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 5.8e-292 1007.7 1015 59.4
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 1.4e-269 933.3 920 60.4
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 1.2e-257 893.6 971 55.0
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 4.7e-233 812.0 948 54.6
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 1.8e-232 810.1 951 54.3
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 7.4e-231 804.7 945 54.2
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 2.2e-230 803.1 889 54.3
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 2.8e-230 802.7 949 53.8
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 1.9e-226 790.0 943 51.2
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 1.2e-220 770.8 947 51.1
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 3.2e-218 762.7 963 49.9
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 1.4e-216 757.3 945 51.1
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 1.3e-214 750.7 1016 47.0
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 1.3e-214 750.7 937 50.6
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 8.2e-214 748.0 946 52.1
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 1.8e-213 746.9 940 49.6
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 5.3e-213 745.3 928 50.4
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.2e-212 744.2 930 50.2
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 2.7e-212 743.0 950 50.2
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 5.9e-212 741.9 930 50.2
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 6.5e-211 738.4 993 47.7
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 1.5e-210 737.3 924 50.5
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 4.2e-210 735.7 948 49.1
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 3.6e-209 732.6 927 49.8
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 3.6e-209 732.6 917 51.6
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 2.0e-207 726.9 946 51.5
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 2.2e-206 723.4 946 47.8
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 3.7e-206 722.6 909 51.0
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 1.4e-205 720.7 914 50.5
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 2.4e-205 719.9 952 49.3
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 1.2e-204 717.6 949 47.1
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.6e-204 717.2 928 49.2
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 4.5e-204 715.7 883 52.4
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 3.8e-203 712.6 945 48.6
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 1.0e-200 704.5 950 47.3
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 3.1e-197 693.0 904 48.7
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 1.7e-195 687.2 937 47.3
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 6.6e-195 685.3 686 59.8
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 1.1e-194 684.5 945 47.1
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 1.5e-194 684.1 921 49.0
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 3.3e-194 682.9 939 46.1
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 4.3e-194 682.6 959 46.6
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 5.6e-194 682.2 979 47.6
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.6e-193 680.6 944 45.9
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 6.1e-193 678.7 939 45.8
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 6.1e-193 678.7 956 48.7
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 1.4e-192 677.6 930 47.3
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 1.4e-192 677.6 969 47.8
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 6.8e-192 675.2 891 48.5
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 2.0e-191 673.7 938 47.4
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 5.8e-191 672.2 943 48.8
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 1.3e-190 671.0 948 47.3
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 2.2e-190 670.2 941 47.3
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 4.9e-190 669.1 933 48.3
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 1.2e-188 664.5 948 48.0
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 1.6e-188 664.1 946 46.8
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 2.0e-188 663.7 927 45.5
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 2.7e-188 663.3 944 47.0
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 2.3e-187 660.2 899 48.3
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 3.9e-187 659.4 942 47.2
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 8.6e-187 658.3 946 46.6
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 1.1e-186 657.9 913 48.8
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 2.1e-185 653.7 953 45.0
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 2.1e-185 653.7 899 48.3
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 3.6e-185 652.9 942 46.5
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 4.7e-185 652.5 901 47.9
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 1.4e-184 651.0 949 46.5
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 5.2e-184 649.0 950 44.7
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 6.8e-184 648.7 928 47.3
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.4e-183 646.4 867 45.8
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 3.4e-183 646.4 897 47.4
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 3.7e-182 642.9 942 47.0
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 6.4e-182 642.1 950 44.8
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 9.2e-181 638.3 911 47.9
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 2.1e-180 637.1 930 44.8
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 4.6e-180 636.0 940 45.5
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 2.3e-179 633.6 954 45.1
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 3.0e-179 633.3 790 52.0
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.5e-178 630.2 926 46.5
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 7.3e-178 628.6 867 45.3
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 6.2e-177 625.5 866 45.2
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 1.5e-175 620.9 932 45.4
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 4.6e-172 609.4 952 46.1
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.1e-170 604.7 938 44.0
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 1.9e-170 604.0 932 45.2
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 5.6e-170 602.4 889 45.7
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 9.5e-170 601.7 939 44.7
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 8.1e-169 598.6 963 44.4
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 1.2e-167 594.7 961 43.6
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 1.2e-167 594.7 955 42.3
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.0e-167 594.0 883 45.1
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 5.8e-167 592.4 873 46.5
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 5.4e-165 585.9 882 45.7
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 1.2e-164 584.7 916 46.8
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 3.5e-164 583.2 951 45.5
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 3.9e-163 579.7 889 47.4
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 8.7e-163 578.6 1024 41.6
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 5.3e-160 569.3 679 52.3
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 6.6e-155 552.4 957 42.4
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 4.8e-153 546.2 614 54.7
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 6.2e-153 545.8 880 44.5
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 1.8e-152 544.3 950 42.0
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 9.0e-152 542.0 905 43.0
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 9.0e-152 542.0 929 43.3
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.6e-151 540.4 940 42.8
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 3.2e-149 533.5 944 42.6
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 9.3e-149 531.9 943 41.3
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 7.9e-148 528.9 853 42.9
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 5.1e-147 526.2 847 43.2
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 1.8e-144 517.7 924 41.5
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 6.9e-144 515.8 930 40.1
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 4.2e-141 506.5 886 43.1
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 3.0e-139 500.4 950 41.1
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 3.0e-139 500.4 688 48.4
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 6.7e-139 499.2 926 41.1
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 1.5e-138 498.0 858 42.7
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 7.6e-135 485.7 810 42.8
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 4.9e-134 483.0 696 48.4
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 3.9e-131 473.4 944 39.9
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 6.7e-131 472.6 944 39.9
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 6.7e-131 472.6 944 40.0
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 1.5e-130 471.5 948 40.2
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 2.5e-130 470.7 950 40.6
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 2.5e-130 470.7 947 39.7
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 1.3e-129 468.4 941 39.5
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 2.8e-129 467.2 941 39.9
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 8.2e-129 465.7 942 39.9
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 8.2e-129 465.7 942 39.9
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 9.0e-128 462.2 696 46.0
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 5.9e-127 459.5 902 39.8
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 1.1e-120 438.7 841 39.4
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 3.3e-114 417.2 942 36.8
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 8.2e-113 412.5 511 50.5
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 7.7e-111 406.0 890 35.8
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 1.7e-110 404.8 847 40.3
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 6.7e-107 392.9 635 43.8
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 9.7e-106 389.0 826 37.3
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 4.8e-105 386.7 848 37.5
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 1.2e-103 382.1 468 50.9
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 1.2e-100 372.1 586 45.2
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 9.4e-93 345.9 421 51.5
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 6.1e-92 343.2 598 44.0
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 7.5e-90 336.3 990 32.7
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 2.5e-85 321.2 890 33.0
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 4.3e-77 293.9 865 32.7
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 6.1e-76 290.0 339 51.6
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 2.3e-75 288.1 784 34.2
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 7.3e-69 266.5 846 31.8
Atru.chr6.2365 Acer truncatum HOM05D003655 ORTHO05D004065 6.2e-68 263.5 296 50.3
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 2.1e-63 248.4 381 44.9
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 4.3e-61 240.7 756 33.1
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 5.4e-56 223.8 411 40.1
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 3.5e-55 221.1 361 44.9
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 9.6e-53 213.0 282 50.7
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 1.6e-47 195.7 282 44.7
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 6.0e-47 193.7 297 46.1
Atru.chr6.2272 Acer truncatum HOM05D003655 ORTHO05D004065 1.9e-45 188.7 231 49.4
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 3.8e-41 174.5 570 30.7
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 3.0e-38 164.9 441 30.8
Haze_14709 Corylus avellana HOM05D003655 ORTHO05D004065 2.8e-36 158.3 110 65.5
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 1.8e-35 155.6 287 42.2
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 2.8e-28 131.7 188 44.1
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.9e-24 119.0 257 37.0
Cfa007935 Carpinus fangiana HOM05D003655 ORTHO05D004065 4.2e-24 117.9 97 55.7
Medtr2g449950 Medicago truncatula HOM05D003655 ORTHO05D004065 4.6e-23 114.4 82 69.5
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 4.6e-23 114.4 173 42.8
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.0e-22 113.2 252 38.5
Peaxi162Scf00417g00004 Petunia axillaris HOM05D003655 ORTHO05D004065 2.4e-19 102.1 138 44.9
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 7.2e-16 90.5 85 49.4
Atru.chr6.2364 Acer truncatum HOM05D003655 ORTHO05D004065 1.3e-14 86.3 98 63.3
Actinidia25101 Actinidia chinensis HOM05D003655 ORTHO05D004065 5.1e-14 84.3 105 47.6
Sopen01g024690 Solanum pennellii HOM05D000006 ORTHO05D000695 3.3e-13 81.6 122 41.8
Solyc01g058690.1 Solanum lycopersicum HOM05D003655 ORTHO05D004065 1.3e-12 79.7 89 49.4
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 8.2e-12 77.0 47 72.3
Ca_31040_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 2.9e-09 68.6 150 35.3
CBR_g57010 Chara braunii HOM05D003655 ORTHO05D004065 2.5e-08 65.5 89 38.2
Medtr2g449940 Medicago truncatula HOM05D003655 ORTHO05D004065 3.9e-06 58.2 47 63.8


User provided reference genes

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