Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.23988 Avicennia marina HOM05D001969 ORTHO05D009003 4.2e-56 221.5 141 100.0
SalBow7G2523 Salvia bowleyana HOM05D001969 ORTHO05D009003 3.4e-42 175.3 141 80.9
Migut.H00150 Erythranthe guttata HOM05D001969 ORTHO05D009003 5.8e-42 174.5 141 80.9
SGA_v2.0_scaffold135G34841 Striga asiatica HOM05D001969 ORTHO05D009003 5.8e-42 174.5 138 82.6
SalBow1G0343 Salvia bowleyana HOM05D001969 ORTHO05D009003 1.7e-41 172.9 138 81.2
SalBow7G4035 Salvia bowleyana HOM05D001969 ORTHO05D009003 1.7e-41 172.9 138 81.2
Cc11_g01780 Coffea canephora HOM05D001969 ORTHO05D009003 4.9e-41 171.4 136 82.4
Nitab4.5_0006575g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 7.9e-39 164.1 133 79.7
Cc11_g01770 Coffea canephora HOM05D001969 ORTHO05D009003 1.0e-38 163.7 140 77.9
SGA_v2.0_scaffold3G01553 Striga asiatica HOM05D001969 ORTHO05D009003 1.0e-38 163.7 135 79.3
Oeu047331.1 Olea europaea HOM05D001969 ORTHO05D009003 3.0e-38 162.2 141 76.6
HanXRQChr09g0274351 Helianthus annuus HOM05D001969 ORTHO05D009003 1.5e-37 159.8 141 73.8
HanXRQChr11g0350221 Helianthus annuus HOM05D001969 ORTHO05D009003 1.5e-37 159.8 141 74.5
Nitab4.5_0003069g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 3.3e-37 158.7 133 78.9
Atru.chr6.3054 Acer truncatum HOM05D001969 ORTHO05D009003 9.6e-37 157.1 140 76.4
CANSAT78G0375 Cannabis sativa HOM05D001969 ORTHO05D003463 1.6e-36 156.4 130 78.5
CSS0025708 Camellia sinensis var. sinensis HOM05D001969 ORTHO05D009003 3.7e-36 155.2 138 74.6
HanXRQChr06g0167021 Helianthus annuus HOM05D001969 ORTHO05D009003 6.3e-36 154.5 141 71.6
vmacro09267 Vaccinium macrocarpon HOM05D001969 ORTHO05D009003 1.1e-35 153.7 136 75.0
ECA233G3782 Erigeron canadensis HOM05D001969 ORTHO05D009003 3.1e-35 152.1 141 68.1
ECA236G1367 Erigeron canadensis HOM05D001969 ORTHO05D009003 3.1e-35 152.1 141 68.1
Potri.013G145800 Populus trichocarpa HOM05D001969 ORTHO05D009003 1.5e-34 149.8 141 75.2
TAR627G0343 Trochodendron aralioides HOM05D001969 ORTHO05D009003 1.5e-34 149.8 139 73.4
TAR627G0582 Trochodendron aralioides HOM05D001969 ORTHO05D009003 1.5e-34 149.8 139 73.4
unitig_748.g8143 Utricularia gibba HOM05D001969 ORTHO05D009003 2.0e-34 149.4 141 71.6
Rhsim04G0021700 Rhododendron simsii HOM05D001969 ORTHO05D009003 3.4e-34 148.7 128 78.1
COL.COLO4_13690 Corchorus olitorius HOM05D001969 ORTHO05D009003 5.9e-34 147.9 141 74.5
DCAR_011200 Daucus carota HOM05D001969 ORTHO05D009003 7.6e-34 147.5 134 50.0
Dinv23700 Davidia involucrata HOM05D001969 ORTHO05D009003 1.0e-33 147.1 133 69.2
Aqoxy6G02660 Aquilegia oxysepala HOM05D001969 ORTHO05D009003 1.3e-33 146.7 138 71.7
TAR629G1647 Trochodendron aralioides HOM05D001969 ORTHO05D009003 1.7e-33 146.4 136 70.6
Gohir.D02G182700 Gossypium hirsutum HOM05D001969 ORTHO05D009003 2.2e-33 146.0 141 73.8
TWI18G1087 Tripterygium wilfordii HOM05D001969 ORTHO05D009003 2.2e-33 146.0 140 62.9
Thecc.02G172900 Theobroma cacao HOM05D001969 ORTHO05D009003 2.9e-33 145.6 141 72.3
CANSAT21G1059 Cannabis sativa HOM05D001969 ORTHO05D009003 3.8e-33 145.2 137 73.0
Peaxi162Scf00423g00066 Petunia axillaris HOM05D001969 ORTHO05D009003 3.8e-33 145.2 132 75.0
Gohir.A03G159600 Gossypium hirsutum HOM05D001969 ORTHO05D009003 8.5e-33 144.1 141 73.0
MD17G1082700 Malus domestica HOM05D001969 ORTHO05D009003 1.1e-32 143.7 132 75.0
Solyc07g064840.3 Solanum lycopersicum HOM05D001969 ORTHO05D009003 1.1e-32 143.7 128 74.2
Lsat_1_v5_gn_3_137700 Lactuca sativa HOM05D001969 ORTHO05D009003 2.5e-32 142.5 138 57.2
Nn1g06730 Nelumbo nucifera HOM05D001969 ORTHO05D009003 2.5e-32 142.5 136 64.7
QL08p048209 Quercus lobata HOM05D001969 ORTHO05D009003 2.5e-32 142.5 133 70.7
PGSC0003DMG400022306 Solanum tuberosum HOM05D001969 ORTHO05D009003 2.5e-32 142.5 133 71.4
CAN.G1310.15 Capsicum annuum HOM05D001969 ORTHO05D009003 3.2e-32 142.1 141 69.5
Nitab4.5_0002260g0270 Nicotiana tabacum HOM05D001969 ORTHO05D009003 3.2e-32 142.1 140 70.7
Sopen07g033040 Solanum pennellii HOM05D001969 ORTHO05D009003 3.2e-32 142.1 128 74.2
Nn1g03931 Nelumbo nucifera HOM05D001969 ORTHO05D009003 4.2e-32 141.7 136 70.6
Actinidia39300 Actinidia chinensis HOM05D001969 ORTHO05D009003 5.5e-32 141.4 141 69.5
RcHm_v2.0_Chr2g0127151 Rosa chinensis HOM05D001969 ORTHO05D009003 5.5e-32 141.4 131 57.3
MD09G1092600 Malus domestica HOM05D001969 ORTHO05D009003 9.3e-32 140.6 138 71.7
Nitab4.5_0003358g0010 Nicotiana tabacum HOM05D001969 ORTHO05D009003 1.2e-31 140.2 140 69.3
Lj3g0006045 Lotus japonicus HOM05D001969 ORTHO05D009003 1.6e-31 139.8 136 69.1
Lalb_Chr19g0135421 Lupinus albus HOM05D001969 ORTHO05D009003 1.6e-31 139.8 137 71.5
Lju41E32T0 Lonicera japonica HOM05D001969 ORTHO05D009003 3.6e-31 138.7 88 70.5
Ciclev10017445m.g Citrus clementina HOM05D001969 ORTHO05D003463 4.6e-31 138.3 130 61.5
VMungo1127G0255 Vigna mungo HOM05D001969 ORTHO05D009003 4.6e-31 138.3 137 68.6
ATR1001G005 Amborella trichopoda HOM05D001969 ORTHO05D009003 7.9e-31 137.5 136 64.7
AUR62029451 Chenopodium quinoa HOM05D001969 ORTHO05D009003 1.0e-30 137.1 129 68.2
Glyma.09G257600 Glycine max HOM05D001969 ORTHO05D009003 1.0e-30 137.1 137 68.6
Actinidia39674 Actinidia chinensis HOM05D001969 ORTHO05D003463 1.3e-30 136.7 129 68.2
Duzib248G0251 Durio zibethinus HOM05D001969 ORTHO05D009003 1.3e-30 136.7 141 69.5
Sed0009336 Sechium edule HOM05D001969 ORTHO05D009003 1.3e-30 136.7 132 68.9
CAN.G1720.5 Capsicum annuum HOM05D001969 ORTHO05D009003 2.3e-30 136.0 141 66.7
Cfa003704 Carpinus fangiana HOM05D001969 ORTHO05D009003 2.3e-30 136.0 132 72.7
Glyma.18G235000 Glycine max HOM05D001969 ORTHO05D009003 6.7e-30 134.4 128 71.9
MBI04_g38761_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 6.7e-30 134.4 132 68.2
PGR142G0421 Punica granatum HOM05D001969 ORTHO05D003463 6.7e-30 134.4 127 72.4
Lj2g0006312 Lotus japonicus HOM05D001969 ORTHO05D009003 1.1e-29 133.7 136 67.6
Phvul.011G177800 Phaseolus vulgaris HOM05D001969 ORTHO05D009003 2.5e-29 132.5 137 65.7
Eucgr.K00935 Eucalyptus grandis HOM05D001969 ORTHO05D009003 3.3e-29 132.1 140 64.3
MBI06_g08467_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 7.4e-29 131.0 139 64.0
Medtr4g065010 Medicago truncatula HOM05D001969 ORTHO05D009003 1.6e-28 129.8 125 71.2
EL10Ac3g05654 Beta vulgaris HOM05D001969 ORTHO05D003463 2.2e-28 129.4 128 71.1
CiPaw.16G086600 Carya illinoinensis HOM05D001969 ORTHO05D009003 2.8e-28 129.0 132 71.2
Sed0013701 Sechium edule HOM05D001969 ORTHO05D009003 6.3e-28 127.9 89 62.9
GSVIVG01030575001 Vitis vinifera HOM05D001969 ORTHO05D009003 8.2e-28 127.5 119 72.3
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 1.4e-27 126.7 120 75.0
Gorai.005G205100 Gossypium raimondii HOM05D001969 ORTHO05D003463 1.4e-27 126.7 122 75.4
Manes.13G150950 Manihot esculenta HOM05D001969 ORTHO05D009003 1.4e-27 126.7 78 73.1
TPR.G21647 Trifolium pratense HOM05D001969 ORTHO05D009003 2.4e-27 125.9 125 68.8
Psat7g197120 Pisum sativum HOM05D001969 ORTHO05D009003 4.1e-27 125.2 125 68.8
Haze_15783 Corylus avellana HOM05D001969 ORTHO05D009003 5.3e-27 124.8 120 75.0
Ca_20693_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 6.9e-27 124.4 136 64.0
Ca_30106_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 6.9e-27 124.4 136 64.0
FAN05G0495 Fragaria x ananassa HOM05D001969 ORTHO05D003463 1.2e-26 123.6 83 61.4
Medtr4g046043 Medicago truncatula HOM05D001969 ORTHO05D009003 1.2e-26 123.6 125 66.4
Sc03g0002190 Simmondsia chinensis HOM05D001969 ORTHO05D009003 2.0e-26 122.9 136 56.6
Lsat_1_v5_gn_2_3941 Lactuca sativa HOM05D001969 ORTHO05D009003 3.8e-25 118.6 124 44.4
SEGI_26592 Sequoiadendron giganteum HOM05D001969 ORTHO05D009003 4.2e-24 115.2 129 56.6
Mapoly0071s0092 Marchantia polymorpha HOM05D001969 ORTHO05D009003 1.6e-23 113.2 140 57.9
Zm00001eb194600 Zea mays HOM05D001969 ORTHO05D009003 3.6e-23 112.1 128 62.5
Zm00001eb225500 Zea mays HOM05D001969 ORTHO05D009003 3.6e-23 112.1 128 62.5
Zm00001eb072880 Zea mays HOM05D001969 ORTHO05D009003 4.6e-23 111.7 126 63.5
Zm00001eb194610 Zea mays HOM05D001969 ORTHO05D009003 4.6e-23 111.7 128 61.7
Zm00001eb414500 Zea mays HOM05D001969 ORTHO05D009003 4.6e-23 111.7 128 61.7
Manes.06G013500 Manihot esculenta HOM05D001969 ORTHO05D009003 7.9e-23 110.9 111 51.4
CsaV3_6G012510 Cucumis sativus L. HOM05D001969 ORTHO05D003463 1.4e-22 110.2 114 71.1
Aa31LG9G15650 Aethionema arabicum HOM05D001969 ORTHO05D009003 5.1e-22 108.2 136 38.2
TPR.G31971 Trifolium pratense HOM05D001669 ORTHO05D006496 8.8e-22 107.5 77 55.8
THA.LOC104811178 Tarenaya hassleriana HOM05D001969 ORTHO05D009003 1.1e-21 107.1 143 37.1
Zm00001eb350110 Zea mays HOM05D001969 ORTHO05D009003 1.1e-21 107.1 128 60.2
Os07g0530300 Oryza sativa ssp. japonica HOM05D001969 ORTHO05D009003 1.5e-21 106.7 128 59.4
HPP92_010084 Vanilla planifolia HOM05D001969 ORTHO05D009003 5.7e-21 104.8 132 60.6
HPP92_010093 Vanilla planifolia HOM05D001969 ORTHO05D009003 5.7e-21 104.8 132 60.6
PSO384G2148 Papaver somniferum HOM05D001969 ORTHO05D009003 2.2e-20 102.8 114 59.6
PSO339G1404 Papaver somniferum HOM05D001969 ORTHO05D009003 8.2e-20 100.9 121 56.2
Cpa.g.sc17.168 Carica papaya HOM05D001969 ORTHO05D003463 1.8e-19 99.8 115 65.2
Hma1.2p1_0832F.1_g225700 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 3.1e-19 99.0 136 62.5
Pp3c6_17280 Physcomitrium patens HOM05D001969 ORTHO05D009003 6.9e-19 97.8 126 57.1
Rhsim04G0065900 Rhododendron simsii HOM05D001969 ORTHO05D003463 1.5e-18 96.7 99 77.8
AL3G54010 Arabidopsis lyrata HOM05D001969 ORTHO05D009003 7.7e-18 94.4 131 42.7
FAN02G3777 Fragaria x ananassa HOM05D001969 ORTHO05D009003 2.2e-17 92.8 94 69.1
PSO017G7338 Papaver somniferum HOM05D001969 ORTHO05D009003 2.2e-17 92.8 128 54.7
Ah.07g207260 Amaranthus hybridus HOM05D001969 ORTHO05D003463 1.1e-16 90.5 115 53.0
SMO351G0323 Selaginella moellendorffii HOM05D001969 ORTHO05D009003 1.4e-14 83.6 132 49.2
BcaC07g41194 Brassica carinata HOM05D001969 ORTHO05D003463 1.1e-13 80.5 117 35.0
C08p42010 Brassica napus HOM05D001969 ORTHO05D003463 1.1e-13 80.5 117 35.0
BolC8t51763H Brassica oleracea HOM05D001969 ORTHO05D003463 1.1e-13 80.5 117 35.0
BcaB08g34941 Brassica carinata HOM05D001969 ORTHO05D003463 4.4e-13 78.6 122 32.8
A09p58710 Brassica napus HOM05D001969 ORTHO05D003463 7.4e-13 77.8 117 33.3
BraA09t41257Z Brassica rapa HOM05D001969 ORTHO05D003463 7.4e-13 77.8 117 33.3
Thhalv10001991m.g Eutrema salsugineum HOM05D001969 ORTHO05D003463 1.3e-12 77.0 118 32.2
Zm00001eb414510 Zea mays HOM05D001969 ORTHO05D009003 2.2e-12 76.3 62 53.2
Eucgr.K00932 Eucalyptus grandis HOM05D001969 ORTHO05D009003 3.1e-11 72.4 58 58.6
PSO675G3991 Papaver somniferum HOM05D001969 ORTHO05D009003 3.1e-11 72.4 142 32.4
MCO02G305 Micromonas commoda HOM05D001969 ORTHO05D009003 9.1e-11 70.9 127 45.7
Hma1.2p1_0384F.1_g141150 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 1.1e-08 63.9 87 37.9
Aa31LG8G17650 Aethionema arabicum HOM05D001969 ORTHO05D003463 1.5e-08 63.5 105 28.6
Hma1.2p1_1820F.1_g304180 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 2.5e-08 62.8 69 88.4
Cre02.g075550 Chlamydomonas reinhardtii HOM05D001969 ORTHO05D009003 2.1e-07 59.7 140 39.3
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 6.1e-07 58.2 92 47.8


User provided reference genes

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