Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.22895 Avicennia marina HOM05D005415 ORTHO05D006242 0.0e+00 1236.1 675 100.0
Migut.I00557 Erythranthe guttata HOM05D005415 ORTHO05D006242 5.0e-216 755.0 675 63.9
SGA_v2.0_scaffold414G51200 Striga asiatica HOM05D005415 ORTHO05D006242 1.3e-195 687.2 681 59.6
SalBow5G0795 Salvia bowleyana HOM05D005415 ORTHO05D006242 6.0e-193 678.3 641 57.7
Dinv11193 Davidia involucrata HOM05D005415 ORTHO05D006242 6.0e-161 572.0 575 55.1
Oeu030666.2 Olea europaea HOM05D005415 ORTHO05D006242 4.0e-157 559.3 876 41.3
Sopen12g001850 Solanum pennellii HOM05D005415 ORTHO05D006242 1.5e-156 557.4 573 56.4
PGSC0003DMG400013896 Solanum tuberosum HOM05D005415 ORTHO05D006242 3.8e-155 552.7 567 55.7
Solyc12g005900.3 Solanum lycopersicum HOM05D005415 ORTHO05D006242 9.3e-154 548.1 571 55.0
GSVIVG01008582001 Vitis vinifera HOM05D005415 ORTHO05D006242 4.6e-153 545.8 588 53.2
Cc10_g14800 Coffea canephora HOM05D005415 ORTHO05D006242 7.9e-153 545.0 660 51.4
unitig_8.g4692 Utricularia gibba HOM05D005415 ORTHO05D006242 2.3e-152 543.5 604 52.2
Thecc.03G133700 Theobroma cacao HOM05D005415 ORTHO05D006242 3.3e-151 539.7 674 48.2
Nitab4.5_0001213g0090 Nicotiana tabacum HOM05D005415 ORTHO05D006242 8.1e-150 535.0 568 52.8
Gorai.001G056700 Gossypium raimondii HOM05D005415 ORTHO05D006242 5.3e-149 532.3 550 54.0
Duzib068G0666 Durio zibethinus HOM05D005415 ORTHO05D006242 6.9e-149 531.9 558 53.6
TAR629G2415 Trochodendron aralioides HOM05D005415 ORTHO05D006242 9.0e-149 531.6 588 50.3
Eucgr.B00088 Eucalyptus grandis HOM05D005415 ORTHO05D006242 1.2e-148 531.2 559 52.2
Potri.015G100200 Populus trichocarpa HOM05D005415 ORTHO05D006242 2.0e-148 530.4 556 53.8
Gohir.D07G053600 Gossypium hirsutum HOM05D005415 ORTHO05D006242 2.6e-148 530.0 552 53.8
COL.COLO4_16633 Corchorus olitorius HOM05D005415 ORTHO05D006242 5.8e-148 528.9 558 53.2
Sc10g0010570 Simmondsia chinensis HOM05D005415 ORTHO05D006242 1.0e-147 528.1 575 52.3
Actinidia18334 Actinidia chinensis HOM05D005415 ORTHO05D006242 6.5e-147 525.4 578 50.7
Nitab4.5_0003683g0010 Nicotiana tabacum HOM05D005415 ORTHO05D006242 1.2e-145 521.2 555 52.1
Sabra15G0120800 Salix brachista HOM05D005415 ORTHO05D006242 1.6e-145 520.8 556 53.8
Lj9C481T20 Lonicera japonica HOM05D005415 ORTHO05D006242 2.3e-144 516.9 561 52.9
CiPaw.13G052100 Carya illinoinensis HOM05D005415 ORTHO05D006242 1.1e-143 514.6 554 51.1
Peaxi162Scf00047g00185 Petunia axillaris HOM05D005415 ORTHO05D006242 3.3e-143 513.1 719 45.6
Ciclev10031056m.g Citrus clementina HOM05D005415 ORTHO05D006242 4.3e-143 512.7 560 52.7
QL10p002178 Quercus lobata HOM05D005415 ORTHO05D006242 1.3e-142 511.1 685 45.4
Atru.chr6.1849 Acer truncatum HOM05D005415 ORTHO05D006242 1.6e-142 510.8 561 50.8
Phvul.002G284900 Phaseolus vulgaris HOM05D005415 ORTHO05D006242 1.6e-142 510.8 569 49.7
EL10Ac5g11383 Beta vulgaris HOM05D005415 ORTHO05D006242 2.8e-142 510.0 565 52.2
VMungo0251G3541 Vigna mungo HOM05D005415 ORTHO05D006242 4.5e-140 502.7 604 47.8
PGR083G0902 Punica granatum HOM05D005415 ORTHO05D006242 1.0e-139 501.5 566 50.9
arahy.Tifrunner.gnm1.ann1.NCF6IW Arachis hypogaea HOM05D005415 ORTHO05D006242 8.5e-139 498.4 594 48.3
HanXRQChr09g0273461 Helianthus annuus HOM05D005415 ORTHO05D006242 9.3e-138 495.0 582 48.8
Ca_17566_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 1.0e-136 491.5 559 49.4
Ca_29727_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 1.0e-136 491.5 559 49.4
vmacro19135 Vaccinium macrocarpon HOM05D005415 ORTHO05D006242 6.7e-136 488.8 661 44.6
Lj4g0026231 Lotus japonicus HOM05D005415 ORTHO05D006242 1.1e-135 488.0 658 45.3
THA.LOC104798938 Tarenaya hassleriana HOM05D005415 ORTHO05D006242 1.1e-135 488.0 553 49.0
Cfa018765 Carpinus fangiana HOM05D005415 ORTHO05D006242 5.7e-135 485.7 547 51.7
Sed0003726 Sechium edule HOM05D005415 ORTHO05D006242 6.3e-134 482.3 590 46.1
CsaV3_1G000400 Cucumis sativus L. HOM05D005415 ORTHO05D006242 3.1e-133 479.9 545 49.5
Hund02456 Selenicereus undatus HOM05D005415 ORTHO05D006242 3.1e-133 479.9 563 49.4
MELO3C026191.2 Cucumis melo HOM05D005415 ORTHO05D006242 4.5e-132 476.1 545 49.7
Lsat_1_v5_gn_4_82521 Lactuca sativa HOM05D005415 ORTHO05D006242 1.7e-131 474.2 648 45.2
AUR62038846 Chenopodium quinoa HOM05D005415 ORTHO05D006242 2.9e-131 473.4 577 47.3
Glyma.08G010700 Glycine max HOM05D005415 ORTHO05D006242 6.5e-131 472.2 611 45.3
Psat7g037120 Pisum sativum HOM05D005415 ORTHO05D006242 6.5e-131 472.2 676 43.0
AUR62043951 Chenopodium quinoa HOM05D005415 ORTHO05D006242 1.4e-130 471.1 570 48.8
AUR62029576 Chenopodium quinoa HOM05D005415 ORTHO05D006242 2.7e-129 466.8 580 47.9
CANSAT25G2590 Cannabis sativa HOM05D005415 ORTHO05D006242 1.8e-128 464.2 563 49.0
RcHm_v2.0_Chr7g0189541 Rosa chinensis HOM05D005415 ORTHO05D006242 1.5e-127 461.1 566 47.2
Rhsim08G0192500 Rhododendron simsii HOM05D005415 ORTHO05D006242 2.0e-127 460.7 643 44.5
arahy.Tifrunner.gnm1.ann1.MQVT4E Arachis hypogaea HOM05D005415 ORTHO05D006242 2.6e-127 460.3 613 44.0
MD14G1152700 Malus domestica HOM05D005415 ORTHO05D006242 2.6e-127 460.3 580 47.8
Aqoxy3G01618 Aquilegia oxysepala HOM05D005415 ORTHO05D006242 3.3e-127 459.9 713 42.1
Lalb_Chr13g0297171 Lupinus albus HOM05D005415 ORTHO05D006242 7.4e-127 458.8 630 42.7
ECA232G0893 Erigeron canadensis HOM05D005415 ORTHO05D006242 9.7e-127 458.4 671 42.5
AL8G40620 Arabidopsis lyrata HOM05D005415 ORTHO05D006242 6.3e-126 455.7 551 47.4
FAN26G2295 Fragaria x ananassa HOM05D005415 ORTHO05D006242 1.4e-125 454.5 559 48.1
Prupe.5G147700 Prunus persica HOM05D005415 ORTHO05D006242 1.4e-125 454.5 582 47.4
FAN19G3201 Fragaria x ananassa HOM05D005415 ORTHO05D006242 3.1e-125 453.4 555 47.2
Sopen05g009520 Solanum pennellii HOM05D005415 ORTHO05D006242 3.1e-125 453.4 571 50.4
FvH4_1g26610 Fragaria vesca HOM05D005415 ORTHO05D006242 2.6e-124 450.3 562 46.4
AT5G63540 Arabidopsis thaliana HOM05D005415 ORTHO05D006242 1.0e-123 448.4 584 45.9
Carub.0008s2427 Capsella rubella HOM05D005415 ORTHO05D006242 1.0e-123 448.4 555 45.4
Thhalv10003815m.g Eutrema salsugineum HOM05D005415 ORTHO05D006242 2.9e-123 446.8 557 45.6
CARHR277400 Cardamine hirsuta HOM05D005415 ORTHO05D006242 1.1e-122 444.9 555 46.8
Aa31LG1G18400 Aethionema arabicum HOM05D005415 ORTHO05D006242 2.5e-122 443.7 667 40.8
Haze_07175 Corylus avellana HOM05D005415 ORTHO05D006242 1.2e-121 441.4 546 48.4
FAN28G1156 Fragaria x ananassa HOM05D005415 ORTHO05D006242 4.7e-121 439.5 552 47.3
MBI07_g01996_MAGBIO Magnolia biondii HOM05D005415 ORTHO05D006242 4.7e-121 439.5 675 41.2
DCAR_021639 Daucus carota HOM05D005415 ORTHO05D006242 3.9e-120 436.4 683 41.4
Medtr8g096570 Medicago truncatula HOM05D005415 ORTHO05D006242 8.8e-120 435.3 672 40.8
BcaC04g23337 Brassica carinata HOM05D005415 ORTHO05D006242 9.1e-117 425.2 578 44.3
ClCG06G018070 Citrullus lanatus HOM05D005415 ORTHO05D006242 9.1e-117 425.2 567 45.3
HPP92_021709 Vanilla planifolia HOM05D005415 ORTHO05D006242 4.5e-116 422.9 584 43.5
Sp2g26630 Schrenkiella parvula HOM05D005415 ORTHO05D006242 1.0e-115 421.8 559 45.3
FAN23G0140 Fragaria x ananassa HOM05D005415 ORTHO05D006242 1.7e-115 421.0 541 46.2
A09p08330 Brassica napus HOM05D005415 ORTHO05D006242 2.2e-115 420.6 581 43.2
C09p09400 Brassica napus HOM05D005415 ORTHO05D006242 2.2e-115 420.6 579 44.2
BcaB04g19924 Brassica carinata HOM05D005415 ORTHO05D006242 4.2e-114 416.4 555 43.6
PSO017G0412 Papaver somniferum HOM05D005415 ORTHO05D006242 2.1e-113 414.1 622 41.5
HPP92_021694 Vanilla planifolia HOM05D005415 ORTHO05D006242 6.1e-113 412.5 584 43.0
PSO478G2612 Papaver somniferum HOM05D005415 ORTHO05D006242 1.7e-110 404.4 646 40.4
Cpa.g.sc4.162 Carica papaya HOM05D005415 ORTHO05D006242 4.1e-109 399.8 552 44.2
BraA09t36482Z Brassica rapa HOM05D005415 ORTHO05D006242 7.0e-109 399.1 619 41.0
BolC9t53852H Brassica oleracea HOM05D005415 ORTHO05D006242 1.1e-106 391.7 604 41.7
Zm00001eb085270 Zea mays HOM05D005415 ORTHO05D006242 2.1e-105 387.5 555 42.9
CAN.G2034.2 Capsicum annuum HOM05D005415 ORTHO05D006242 8.0e-105 385.6 465 51.4
Manes.06G122000 Manihot esculenta HOM05D005415 ORTHO05D006242 1.4e-104 384.8 469 50.3
Solyc05g014400.4 Solanum lycopersicum HOM05D005415 ORTHO05D006242 2.3e-104 384.0 458 51.3
CDE05G0217 Ceratophyllum demersum HOM05D005415 ORTHO05D006242 3.0e-104 383.6 602 40.4
ATR0582G259 Amborella trichopoda HOM05D005415 ORTHO05D006242 3.4e-103 380.2 746 35.4
Nn4g22247 Nelumbo nucifera HOM05D005415 ORTHO05D006242 5.9e-100 369.4 468 49.4
Actinidia25556 Actinidia chinensis HOM05D005415 ORTHO05D006242 1.4e-93 348.2 236 71.2
Ah.11g045540 Amaranthus hybridus HOM05D005415 ORTHO05D006242 7.0e-93 345.9 532 41.9
Gohir.A07G049320 Gossypium hirsutum HOM05D005415 ORTHO05D006242 3.1e-80 303.9 188 76.6
CSS0000208 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 8.9e-80 302.4 204 73.0
TPR.G12905 Trifolium pratense HOM05D005415 ORTHO05D006242 8.6e-75 285.8 210 65.7
Mapoly0147s0014 Marchantia polymorpha HOM05D005415 ORTHO05D006242 7.3e-74 282.7 675 31.9
SMO146G0239 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 2.3e-72 277.7 556 35.4
Pp3c4_19920 Physcomitrium patens HOM05D005415 ORTHO05D006242 1.3e-70 271.9 605 35.4
SMO173G0006 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 3.7e-70 270.4 556 34.5
AagrBONN_evm.TU.Sc2ySwM_117.2504 Anthoceros agrestis HOM05D005415 ORTHO05D006242 2.4e-69 267.7 585 35.6
Os04g0391000 Oryza sativa ssp. japonica HOM05D005415 ORTHO05D006242 1.0e-67 262.3 216 61.1
SMO146G0204 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 2.0e-63 248.1 554 32.5
Gohir.A07G049360 Gossypium hirsutum HOM05D005415 ORTHO05D006242 2.2e-62 244.6 182 68.7
TPR.G12965 Trifolium pratense HOM05D005415 ORTHO05D006242 5.1e-59 233.4 192 63.0
SHI31561 Sapria himalayana HOM05D005415 ORTHO05D006242 7.3e-58 229.6 197 59.9
SMO173G0041 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 1.1e-48 199.1 190 54.2
TAR629G1046 Trochodendron aralioides HOM05D005415 ORTHO05D006242 3.8e-46 190.7 124 75.0
SHI10702 Sapria himalayana HOM05D005415 ORTHO05D006242 1.5e-42 178.7 207 50.2
SHI10695 Sapria himalayana HOM05D005415 ORTHO05D006242 1.8e-40 171.8 174 54.0
CBR_g45436 Chara braunii HOM05D005415 ORTHO05D006242 5.3e-40 170.2 191 44.0
SHI31560 Sapria himalayana HOM05D000002 ORTHO05D000001 1.0e-30 139.4 136 55.9
MCO10G310 Micromonas commoda HOM05D005415 ORTHO05D006242 3.8e-30 137.5 208 38.0
Cre17.g712450 Chlamydomonas reinhardtii HOM05D005415 ORTHO05D006242 1.4e-29 135.6 200 40.0
Medtr1g057810 Medicago truncatula HOM05D000559 ORTHO05D000596 3.2e-29 134.4 203 40.4
Medtr1g105150 Medicago truncatula HOM05D000559 ORTHO05D000596 3.2e-29 134.4 203 40.4
PSO302G0032 Papaver somniferum HOM05D005415 ORTHO05D006242 6.0e-28 130.2 166 47.0
PSO478G1426 Papaver somniferum HOM05D005415 ORTHO05D006242 3.3e-26 124.4 361 29.6
CSS0026788 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 1.1e-24 119.4 88 64.8
SEGI_11582 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 1.0e-19 102.8 80 61.2
TAR381G1645 Trochodendron aralioides HOM05D005415 ORTHO05D006242 8.8e-19 99.8 59 79.7
PSO063G6924 Papaver somniferum HOM05D005415 ORTHO05D006242 4.3e-18 97.4 163 36.8
PRCOL_00000625 Prasinoderma coloniale HOM05D005415 ORTHO05D006242 4.3e-18 97.4 139 41.7
Lsat_1_v5_gn_8_99581 Lactuca sativa HOM05D005415 ORTHO05D006242 3.7e-17 94.4 134 43.3
Medtr1g069480 Medicago truncatula HOM05D005415 ORTHO05D006242 3.8e-14 84.3 113 44.2
Lsat_1_v5_gn_4_20540 Lactuca sativa HOM05D005415 ORTHO05D006242 7.9e-12 76.6 48 75.0
Cre16.g653000 Chlamydomonas reinhardtii HOM05D006752 ORTHO05D008597 7.4e-10 70.1 137 35.8
SMO146G0197 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 9.7e-10 69.7 103 40.8
SMO146G0246 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 9.7e-10 69.7 126 35.7
HPP92_021692 Vanilla planifolia HOM05D005415 ORTHO05D006242 2.8e-09 68.2 59 55.9
SEGI_12458 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 3.7e-09 67.8 82 39.0
PSO063G6394 Papaver somniferum HOM05D005415 ORTHO05D006242 4.8e-09 67.4 56 64.3
Medtr1g071270 Medicago truncatula HOM05D005415 ORTHO05D006242 8.2e-09 66.6 103 38.8
Hma1.2p1_0018F.1_g013060 Hydrangea macrophylla HOM05D006752 ORTHO05D008597 1.1e-08 66.2 160 32.5
PSO013G0019 Papaver somniferum HOM05D005415 ORTHO05D006242 3.1e-08 64.7 155 34.2
SHI10696 Sapria himalayana HOM05D005415 ORTHO05D006242 4.1e-08 64.3 49 63.3
Phvul.009G200000 Phaseolus vulgaris HOM05D006752 ORTHO05D008597 5.3e-08 63.9 134 32.8
PSO017G3192 Papaver somniferum HOM05D005415 ORTHO05D006242 7.0e-08 63.5 76 44.7
ECA234G0120 Erigeron canadensis HOM05D006752 ORTHO05D008597 1.2e-07 62.8 172 29.7
Manes.03G066500 Manihot esculenta HOM05D006752 ORTHO05D008597 1.2e-07 62.8 133 34.6
CBR_g41660 Chara braunii HOM05D001740 ORTHO05D001468 2.0e-07 62.0 167 31.7
CARHR192900 Cardamine hirsuta HOM05D006752 ORTHO05D008597 2.6e-07 61.6 270 25.2
ATR0815G047 Amborella trichopoda HOM05D006752 ORTHO05D008597 4.5e-07 60.8 156 28.2
Mapoly0040s0028 Marchantia polymorpha HOM05D006752 ORTHO05D008597 4.5e-07 60.8 163 29.4
FAN19G2061 Fragaria x ananassa HOM05D006752 ORTHO05D008597 1.0e-06 59.7 294 24.1
THA.LOC104815109 Tarenaya hassleriana HOM05D006752 ORTHO05D008597 1.0e-06 59.7 138 30.4
VMungo1309G1199 Vigna mungo HOM05D006752 ORTHO05D008597 1.7e-06 58.9 123 34.1
Eucgr.C01084 Eucalyptus grandis HOM05D006752 ORTHO05D008597 2.9e-06 58.2 135 35.6
Medtr1g069490 Medicago truncatula HOM05D000559 ORTHO05D000596 5.0e-06 57.4 61 47.5
Hund09171 Selenicereus undatus HOM05D006752 ORTHO05D008597 5.0e-06 57.4 157 31.8
FvH4_1g04220 Fragaria vesca HOM05D006752 ORTHO05D008597 6.5e-06 57.0 260 25.4
Glyma.06G211500 Glycine max HOM05D006752 ORTHO05D008597 6.5e-06 57.0 123 34.1
Medtr1g054730 Medicago truncatula HOM05D000559 ORTHO05D000596 6.5e-06 57.0 56 46.4
FAN28G1533 Fragaria x ananassa HOM05D006752 ORTHO05D008597 8.5e-06 56.6 213 27.7
SMO173G0064 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 8.5e-06 56.6 111 36.9
SMO173G0067 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 8.5e-06 56.6 111 36.9


User provided reference genes

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