Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.22344 Avicennia marina HOM05D005168 ORTHO05D006358 5.7e-80 300.8 149 100.0
SGA_v2.0_scaffold47G17500 Striga asiatica HOM05D005168 ORTHO05D006358 7.8e-61 237.3 120 92.5
SGA_v2.0_scaffold19G08553 Striga asiatica HOM05D005168 ORTHO05D006358 1.0e-60 236.9 120 92.5
Migut.N03173 Erythranthe guttata HOM05D005168 ORTHO05D006358 5.2e-57 224.6 123 82.9
Nitab4.5_0003251g0060 Nicotiana tabacum HOM05D005168 ORTHO05D006358 2.2e-55 219.2 120 84.2
SalBow8G1113 Salvia bowleyana HOM05D005168 ORTHO05D006358 2.2e-55 219.2 123 82.9
Nitab4.5_0000337g0010 Nicotiana tabacum HOM05D005168 ORTHO05D006358 8.3e-55 217.2 120 83.3
CAN.G727.4 Capsicum annuum HOM05D005168 ORTHO05D006358 1.4e-54 216.5 120 82.5
Cc10_g01450 Coffea canephora HOM05D005168 ORTHO05D006358 5.4e-54 214.5 118 83.1
Solyc04g054510.4 Solanum lycopersicum HOM05D005168 ORTHO05D006358 2.7e-53 212.2 120 80.0
PGSC0003DMG400022038 Solanum tuberosum HOM05D005168 ORTHO05D006358 2.7e-53 212.2 120 80.0
Peaxi162Scf00553g00216 Petunia axillaris HOM05D005168 ORTHO05D006358 2.3e-52 209.1 120 80.8
unitig_22.g6797 Utricularia gibba HOM05D005168 ORTHO05D006358 1.1e-49 200.3 123 75.6
Sopen04g024330 Solanum pennellii HOM05D005168 ORTHO05D006358 1.4e-46 189.9 109 78.9
CSS0038486 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 2.0e-45 186.0 120 68.3
CSS0004439 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 5.0e-44 181.4 122 68.0
Actinidia37940 Actinidia chinensis HOM05D005168 ORTHO05D006358 1.1e-41 173.7 120 65.0
vmacro04368 Vaccinium macrocarpon HOM05D005168 ORTHO05D006358 2.2e-39 166.0 123 60.2
DCAR_015742 Daucus carota HOM05D005168 ORTHO05D006358 8.3e-39 164.1 120 60.0
Hma1.2p1_0733F.1_g210170 Hydrangea macrophylla HOM05D005168 ORTHO05D006358 8.3e-39 164.1 120 61.7
Lsat_1_v5_gn_2_14120 Lactuca sativa HOM05D005168 ORTHO05D006358 1.2e-34 150.2 117 59.8
Dinv40488 Davidia involucrata HOM05D005168 ORTHO05D006358 1.6e-34 149.8 105 63.8
HanXRQChr04g0101211 Helianthus annuus HOM05D005168 ORTHO05D006358 1.2e-32 143.7 117 56.4
TWI56G1449 Tripterygium wilfordii HOM05D005168 ORTHO05D006358 2.2e-31 139.4 118 52.5
GSVIVG01009945001 Vitis vinifera HOM05D005168 ORTHO05D006358 2.9e-31 139.0 125 55.2
Psat5g045240 Pisum sativum HOM05D005168 ORTHO05D006358 4.9e-31 138.3 118 55.9
ECA238G1857 Erigeron canadensis HOM05D005168 ORTHO05D006358 1.1e-30 137.1 117 54.7
Rhsim07G0250400 Rhododendron simsii HOM05D005168 ORTHO05D006358 1.9e-30 136.3 120 54.2
Medtr3g102420 Medicago truncatula HOM05D005168 ORTHO05D006358 4.1e-30 135.2 118 55.9
Manes.14G063600 Manihot esculenta HOM05D005168 ORTHO05D006358 5.4e-30 134.8 117 52.1
Ca_00384_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 7.1e-30 134.4 118 54.2
Thecc.08G047200 Theobroma cacao HOM05D005168 ORTHO05D006358 2.1e-29 132.9 118 52.5
Lalb_Chr11g0067001 Lupinus albus HOM05D005168 ORTHO05D006358 2.7e-29 132.5 121 53.7
Nn3g19859 Nelumbo nucifera HOM05D005168 ORTHO05D006358 4.6e-29 131.7 124 50.0
arahy.Tifrunner.gnm1.ann1.TKX6L5 Arachis hypogaea HOM05D005168 ORTHO05D006358 6.0e-29 131.3 124 53.2
CANSAT11G0916 Cannabis sativa HOM05D005168 ORTHO05D006358 6.0e-29 131.3 118 52.5
arahy.Tifrunner.gnm1.ann1.GU7A1M Arachis hypogaea HOM05D005168 ORTHO05D006358 7.8e-29 131.0 124 54.0
Atru.chr1.3654 Acer truncatum HOM05D005168 ORTHO05D006358 1.0e-28 130.6 118 50.8
AT3G25940 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 1.3e-28 130.2 119 53.8
Potri.013G015000 Populus trichocarpa HOM05D005168 ORTHO05D006358 2.3e-28 129.4 118 50.0
CiPaw.07G147200 Carya illinoinensis HOM05D005168 ORTHO05D006358 3.0e-28 129.0 119 50.4
Sc15g0004820 Simmondsia chinensis HOM05D005168 ORTHO05D006358 3.0e-28 129.0 126 52.4
Eucgr.C01258 Eucalyptus grandis HOM05D005168 ORTHO05D006358 3.9e-28 128.6 117 52.1
Eucgr.H00960 Eucalyptus grandis HOM05D005168 ORTHO05D006358 3.9e-28 128.6 117 53.0
AL5G14600 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 5.1e-28 128.3 119 52.1
BcaB03g14336 Brassica carinata HOM05D005168 ORTHO05D006358 6.6e-28 127.9 119 52.1
BcaB03g14344 Brassica carinata HOM05D005168 ORTHO05D006358 6.6e-28 127.9 119 52.1
C07p23400 Brassica napus HOM05D005168 ORTHO05D006358 6.6e-28 127.9 119 52.1
BolC7t42872H Brassica oleracea HOM05D005168 ORTHO05D006358 6.6e-28 127.9 119 52.1
Cpa.g.sc58.102 Carica papaya HOM05D005168 ORTHO05D006358 6.6e-28 127.9 112 53.6
A07p16030 Brassica napus HOM05D005168 ORTHO05D006358 1.1e-27 127.1 119 51.3
BraA07t29331Z Brassica rapa HOM05D005168 ORTHO05D006358 1.1e-27 127.1 119 51.3
CARHR020540 Cardamine hirsuta HOM05D005168 ORTHO05D006358 1.1e-27 127.1 119 52.9
Lj1g0018211 Lotus japonicus HOM05D005168 ORTHO05D006358 1.1e-27 127.1 118 50.8
PSO541G4324 Papaver somniferum HOM05D005168 ORTHO05D006358 1.1e-27 127.1 124 46.8
PSO675G5410 Papaver somniferum HOM05D005168 ORTHO05D006358 1.1e-27 127.1 124 46.8
PGR031G0142 Punica granatum HOM05D005168 ORTHO05D006358 1.5e-27 126.7 118 50.8
Aa31LG4G6030 Aethionema arabicum HOM05D005168 ORTHO05D006358 2.5e-27 125.9 116 50.9
Sp1g17830 Schrenkiella parvula HOM05D005168 ORTHO05D006358 2.5e-27 125.9 119 51.3
Thhalv10019327m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 3.3e-27 125.6 119 51.3
Haze_22662 Corylus avellana HOM05D005168 ORTHO05D006358 4.3e-27 125.2 122 46.7
MD08G1010500 Malus domestica HOM05D005168 ORTHO05D006358 4.3e-27 125.2 118 48.3
QL01p031168 Quercus lobata HOM05D005168 ORTHO05D006358 4.3e-27 125.2 118 47.5
TAR622G0958 Trochodendron aralioides HOM05D005168 ORTHO05D006358 4.3e-27 125.2 124 46.0
THA.LOC104811420 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 5.6e-27 124.8 116 50.0
THA.LOC104825468 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 5.6e-27 124.8 116 50.0
Haze_17776 Corylus avellana HOM05D005168 ORTHO05D006358 7.3e-27 124.4 131 45.8
Thhalv10009132m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 9.6e-27 124.0 119 50.4
BcaB07g32021 Brassica carinata HOM05D005168 ORTHO05D006358 1.2e-26 123.6 117 49.6
Glyma.03G178900 Glycine max HOM05D005168 ORTHO05D006358 1.6e-26 123.2 117 50.4
BraA06t24725Z Brassica rapa HOM05D005168 ORTHO05D006358 2.1e-26 122.9 117 49.6
Carub.0005s0380 Capsella rubella HOM05D005168 ORTHO05D006358 2.1e-26 122.9 116 50.0
CDE11G0347 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 2.1e-26 122.9 130 44.6
BcaC05g25900 Brassica carinata HOM05D005168 ORTHO05D006358 2.8e-26 122.5 117 49.6
C05p18550 Brassica napus HOM05D005168 ORTHO05D006358 2.8e-26 122.5 117 49.6
CARHR146930 Cardamine hirsuta HOM05D005168 ORTHO05D006358 2.8e-26 122.5 119 51.3
Prupe.6G147400 Prunus persica HOM05D005168 ORTHO05D006358 2.8e-26 122.5 118 50.8
EL10Ac1g02165 Beta vulgaris HOM05D005168 ORTHO05D006358 3.6e-26 122.1 126 47.6
Phvul.001G175600 Phaseolus vulgaris HOM05D005168 ORTHO05D006358 3.6e-26 122.1 117 51.3
THA.LOC104825467 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 3.6e-26 122.1 116 49.1
CsaV3_2G024260 Cucumis sativus L. HOM05D005168 ORTHO05D006358 4.7e-26 121.7 118 47.5
BolC5t30566H Brassica oleracea HOM05D005168 ORTHO05D006358 6.2e-26 121.3 117 49.6
Sed0007604 Sechium edule HOM05D005168 ORTHO05D006358 6.2e-26 121.3 118 48.3
Cfa012889 Carpinus fangiana HOM05D005168 ORTHO05D006358 1.1e-25 120.6 118 46.6
MELO3C011355.2 Cucumis melo HOM05D005168 ORTHO05D006358 1.1e-25 120.6 118 47.5
Duzib093G1099 Durio zibethinus HOM05D005168 ORTHO05D006358 2.4e-25 119.4 119 49.6
VMungo1080G1160 Vigna mungo HOM05D005168 ORTHO05D006358 2.4e-25 119.4 121 50.4
A06p16200 Brassica napus HOM05D005168 ORTHO05D006358 3.1e-25 119.0 117 48.7
FvH4_1g24780 Fragaria vesca HOM05D005168 ORTHO05D006358 3.1e-25 119.0 128 47.7
Os03g0711700 Oryza sativa ssp. japonica HOM05D005168 ORTHO05D006358 3.1e-25 119.0 121 46.3
Hund09202 Selenicereus undatus HOM05D005168 ORTHO05D006358 5.2e-25 118.2 126 45.2
Gohir.A06G002600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 6.9e-25 117.9 118 47.5
Gohir.D06G005600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 6.9e-25 117.9 118 47.5
Gorai.010G002800 Gossypium raimondii HOM05D005168 ORTHO05D006358 6.9e-25 117.9 118 47.5
FAN23G3095 Fragaria x ananassa HOM05D005168 ORTHO05D006358 7.6e-24 114.4 124 46.8
SEGI_04309 Sequoiadendron giganteum HOM05D005168 ORTHO05D006358 1.7e-23 113.2 115 50.4
Aqoxy2G01931 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 2.1e-21 106.3 133 41.4
Mapoly0043s0107 Marchantia polymorpha HOM05D005168 ORTHO05D006358 2.1e-21 106.3 124 42.7
Ciclev10003775m.g Citrus clementina HOM05D005168 ORTHO05D006358 2.7e-21 105.9 115 42.6
AagrBONN_evm.TU.Sc2ySwM_368.3393 Anthoceros agrestis HOM05D005168 ORTHO05D006358 4.6e-21 105.1 123 43.1
Zm00001eb054840 Zea mays HOM05D005168 ORTHO05D006358 5.1e-20 101.7 107 46.7
Sabra13G0016900 Salix brachista HOM05D005168 ORTHO05D006358 1.5e-19 100.1 110 41.8
RcHm_v2.0_Chr2g0124111 Rosa chinensis HOM05D005168 ORTHO05D006358 4.3e-19 98.6 124 42.7
Sabra13G0012900 Salix brachista HOM05D005168 ORTHO05D006358 4.8e-18 95.1 95 45.3
Eucgr.L01842 Eucalyptus grandis HOM05D005168 ORTHO05D006358 5.3e-17 91.7 71 59.2
Pp3c24_7070 Physcomitrium patens HOM05D005168 ORTHO05D006358 9.0e-17 90.9 161 33.5
Lj4A21T59 Lonicera japonica HOM05D005168 ORTHO05D006358 1.2e-16 90.5 79 51.9
Ca_15982_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 1.2e-13 80.5 51 68.6
Cre01.g018000 Chlamydomonas reinhardtii HOM05D005168 ORTHO05D006358 2.1e-13 79.7 124 33.1
HPP92_028162 Vanilla planifolia HOM05D005168 ORTHO05D006358 3.5e-13 79.0 86 46.5
AL1G32870 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 7.9e-13 77.8 61 55.7
SMO351G0141 Selaginella moellendorffii HOM05D005168 ORTHO05D006358 7.9e-13 77.8 115 35.7
AT1G20065 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 2.3e-12 76.3 61 54.1
ATR0057G015 Amborella trichopoda HOM05D005168 ORTHO05D006358 3.9e-12 75.5 90 41.1
MD15G1010600 Malus domestica HOM05D005168 ORTHO05D006358 3.9e-12 75.5 52 55.8
Aqoxy6G02286 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 6.7e-12 74.7 123 32.5
Glyma.19G179600 Glycine max HOM05D005168 ORTHO05D006358 1.1e-11 73.9 63 47.6
TPR.G9182 Trifolium pratense HOM05D005168 ORTHO05D006358 5.6e-11 71.6 82 41.5
Eucgr.F02832 Eucalyptus grandis HOM05D005168 ORTHO05D006358 2.8e-10 69.3 82 42.7
BcaC05g25904 Brassica carinata HOM05D005168 ORTHO05D006358 9.0e-09 64.3 91 41.8
CDE09G0329 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 9.0e-09 64.3 82 40.2
THA.LOC109116732 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 1.5e-08 63.5 50 56.0
FAN26G0870 Fragaria x ananassa HOM05D005168 ORTHO05D006358 5.8e-08 61.6 71 45.1
Lsat_1_v5_gn_2_14240 Lactuca sativa HOM05D005168 ORTHO05D006358 1.7e-07 60.1 36 63.9
MCO15G369 Micromonas commoda HOM05D005168 ORTHO05D006358 1.7e-07 60.1 134 27.6
ClCG08G014170 Citrullus lanatus HOM05D005168 ORTHO05D006358 3.8e-07 58.9 58 44.8
CBR_g23850 Chara braunii HOM05D005168 ORTHO05D006358 2.4e-06 56.2 87 36.8
Glyma.06G213500 Glycine max HOM05D005168 ORTHO05D006358 2.4e-06 56.2 67 43.3
Glyma.08G301902 Glycine max HOM05D005168 ORTHO05D006358 2.4e-06 56.2 84 36.9
Glyma.08G246200 Glycine max HOM05D005168 ORTHO05D006358 9.3e-06 54.3 57 42.1


User provided reference genes

Program Settings