Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.21125 Avicennia marina HOM05D004188 ORTHO05D004445 1.5e-48 196.8 189 100.0
Duzib168G0960 Durio zibethinus HOM05D004188 ORTHO05D004445 9.0e-14 81.3 69 59.4
Oeu002868.1 Olea europaea HOM05D004188 ORTHO05D004445 1.2e-13 80.9 62 66.1
Solyc06g016790.3 Solanum lycopersicum HOM05D004188 ORTHO05D004445 1.2e-13 80.9 60 70.0
Sopen06g005740 Solanum pennellii HOM05D004188 ORTHO05D004445 1.2e-13 80.9 60 70.0
Migut.D02222 Erythranthe guttata HOM05D004188 ORTHO05D004445 3.4e-13 79.3 67 62.7
Migut.D02278 Erythranthe guttata HOM05D004188 ORTHO05D004445 3.4e-13 79.3 67 62.7
CAN.G631.25 Capsicum annuum HOM05D004188 ORTHO05D004445 7.6e-13 78.2 69 63.8
Nitab4.5_0000650g0240 Nicotiana tabacum HOM05D004188 ORTHO05D004445 7.6e-13 78.2 62 62.9
CANSAT54G2412 Cannabis sativa HOM05D004188 ORTHO05D004445 1.7e-12 77.0 69 59.4
CAN.G920.1 Capsicum annuum HOM05D004188 ORTHO05D004445 1.7e-12 77.0 56 71.4
Psat7g224760 Pisum sativum HOM05D004188 ORTHO05D004445 2.2e-12 76.6 59 67.8
PGSC0003DMG400008124 Solanum tuberosum HOM05D004188 ORTHO05D004445 2.2e-12 76.6 69 59.4
PGSC0003DMG400029164 Solanum tuberosum HOM05D004188 ORTHO05D004445 2.2e-12 76.6 67 62.7
Nitab4.5_0011114g0020 Nicotiana tabacum HOM05D004188 ORTHO05D004445 2.9e-12 76.3 64 62.5
Gohir.D03G134100 Gossypium hirsutum HOM05D004188 ORTHO05D004445 3.8e-12 75.9 69 56.5
Cc01_g11150 Coffea canephora HOM05D004188 ORTHO05D004445 4.9e-12 75.5 69 60.9
Gorai.003G141200 Gossypium raimondii HOM05D004188 ORTHO05D004445 4.9e-12 75.5 69 56.5
BcaB01g01101 Brassica carinata HOM05D004188 ORTHO05D004445 1.4e-11 73.9 69 62.3
Gohir.A03G034200 Gossypium hirsutum HOM05D004188 ORTHO05D004445 1.4e-11 73.9 69 55.1
Lsat_1_v5_gn_6_46020 Lactuca sativa HOM05D004188 ORTHO05D004445 1.4e-11 73.9 53 67.9
Oeu001268.1 Olea europaea HOM05D004188 ORTHO05D004445 3.2e-11 72.8 69 52.2
CARHR150740 Cardamine hirsuta HOM05D004188 ORTHO05D004445 4.2e-11 72.4 69 59.4
TPR.G15542 Trifolium pratense HOM05D004188 ORTHO05D004445 5.5e-11 72.0 59 64.4
BcaC01g01980 Brassica carinata HOM05D004188 ORTHO05D004445 7.1e-11 71.6 69 60.9
A06p21540 Brassica napus HOM05D004188 ORTHO05D004445 7.1e-11 71.6 69 60.9
C03p69850 Brassica napus HOM05D004188 ORTHO05D004445 7.1e-11 71.6 69 60.9
BolC3t19246H Brassica oleracea HOM05D004188 ORTHO05D004445 7.1e-11 71.6 69 60.9
BraA06t25239Z Brassica rapa HOM05D004188 ORTHO05D004445 7.1e-11 71.6 69 60.9
Oeu030181.1 Olea europaea HOM05D004188 ORTHO05D004445 7.1e-11 71.6 69 52.2
Peaxi162Scf00270g00089 Petunia axillaris HOM05D004188 ORTHO05D004445 7.1e-11 71.6 58 62.1
Sabra09G0008000 Salix brachista HOM05D004188 ORTHO05D004445 7.1e-11 71.6 68 57.4
Sed0015663 Sechium edule HOM05D004188 ORTHO05D004445 7.1e-11 71.6 51 70.6
Hma1.2p1_1031F.1_g250070 Hydrangea macrophylla HOM05D004188 ORTHO05D004445 9.3e-11 71.2 55 61.8
AT3G45230 Arabidopsis thaliana HOM05D004188 ORTHO05D004445 1.2e-10 70.9 53 71.7
ClCG02G021140 Citrullus lanatus HOM05D004188 ORTHO05D004445 1.2e-10 70.9 57 64.9
Duzib150G1311 Durio zibethinus HOM05D004188 ORTHO05D004445 1.2e-10 70.9 57 64.9
AL5G23790 Arabidopsis lyrata HOM05D004188 ORTHO05D004445 1.6e-10 70.5 62 64.5
MELO3C025771.2 Cucumis melo HOM05D004188 ORTHO05D004445 2.1e-10 70.1 57 64.9
ECA233G4889 Erigeron canadensis HOM05D004188 ORTHO05D004445 2.1e-10 70.1 59 62.7
Glyma.12G067800 Glycine max HOM05D004188 ORTHO05D004445 2.1e-10 70.1 57 66.7
Gorai.009G106500 Gossypium raimondii HOM05D004188 ORTHO05D004445 2.1e-10 70.1 50 68.0
Medtr4g059520 Medicago truncatula HOM05D004188 ORTHO05D004445 2.7e-10 69.7 53 71.7
Medtr4g459420 Medicago truncatula HOM05D004188 ORTHO05D004445 2.7e-10 69.7 53 71.7
MBI10_g41700_MAGBIO Magnolia biondii HOM05D004188 ORTHO05D004445 3.5e-10 69.3 63 60.3
Sabra04G0141900 Salix brachista HOM05D004188 ORTHO05D004445 3.5e-10 69.3 50 70.0
TWI75G1406 Tripterygium wilfordii HOM05D004188 ORTHO05D004445 3.5e-10 69.3 65 60.0
CsaV3_6G013900 Cucumis sativus L. HOM05D004188 ORTHO05D004445 4.6e-10 68.9 57 63.2
Glyma.12G172900 Glycine max HOM05D004188 ORTHO05D004445 4.6e-10 68.9 67 55.2
Potri.009G013500 Populus trichocarpa HOM05D004188 ORTHO05D004445 4.6e-10 68.9 50 70.0
Prupe.6G101100 Prunus persica HOM05D004188 ORTHO05D004445 4.6e-10 68.9 69 59.4
Glyma.11G146900 Glycine max HOM05D004188 ORTHO05D004445 7.9e-10 68.2 56 66.1
Solyc11g069390.1 Solanum lycopersicum HOM05D004188 ORTHO05D004445 7.9e-10 68.2 48 70.8
Gohir.D05G102200 Gossypium hirsutum HOM05D004188 ORTHO05D004445 1.0e-09 67.8 69 50.7
arahy.Tifrunner.gnm1.ann1.70MDEI Arachis hypogaea HOM05D004188 ORTHO05D004445 1.3e-09 67.4 46 69.6
arahy.Tifrunner.gnm1.ann1.P4NYDW Arachis hypogaea HOM05D004188 ORTHO05D004445 1.3e-09 67.4 46 69.6
CiPaw.14G080400 Carya illinoinensis HOM05D004188 ORTHO05D004445 1.3e-09 67.4 69 56.5
Dinv32748 Davidia involucrata HOM05D004188 ORTHO05D004445 1.3e-09 67.4 61 54.1
Duzib170G0015 Durio zibethinus HOM05D004188 ORTHO05D004445 1.3e-09 67.4 69 52.2
Lsat_1_v5_gn_1_65340 Lactuca sativa HOM05D004188 ORTHO05D004445 1.3e-09 67.4 52 71.2
Phvul.011G078900 Phaseolus vulgaris HOM05D004188 ORTHO05D004445 1.3e-09 67.4 53 69.8
Sopen11g028110 Solanum pennellii HOM05D004188 ORTHO05D004445 1.3e-09 67.4 42 78.6
Rhsim01G0217000 Rhododendron simsii HOM05D004188 ORTHO05D004445 1.8e-09 67.0 51 62.7
Rhsim01G0217100 Rhododendron simsii HOM05D004188 ORTHO05D004445 1.8e-09 67.0 56 58.9
Rhsim13G0094200 Rhododendron simsii HOM05D004188 ORTHO05D004445 1.8e-09 67.0 57 63.2
Potri.004G210300 Populus trichocarpa HOM05D004188 ORTHO05D004445 2.3e-09 66.6 57 59.6
arahy.Tifrunner.gnm1.ann1.86U5T6 Arachis hypogaea HOM05D004188 ORTHO05D004445 3.0e-09 66.2 57 64.9
arahy.Tifrunner.gnm1.ann1.D47N05 Arachis hypogaea HOM05D004188 ORTHO05D004445 3.0e-09 66.2 57 64.9
Thhalv10002916m.g Eutrema salsugineum HOM05D004188 ORTHO05D004445 5.1e-09 65.5 49 71.4
Lj3g0014225 Lotus japonicus HOM05D004188 ORTHO05D004445 5.1e-09 65.5 59 61.0
RcHm_v2.0_Chr5g0059401 Rosa chinensis HOM05D004188 ORTHO05D004445 5.1e-09 65.5 69 55.1
Ca_01416_v3 Cicer arietinum L. HOM05D004188 ORTHO05D004445 6.7e-09 65.1 55 60.0
EL10Ac9g22513 Beta vulgaris HOM05D004188 ORTHO05D004445 8.7e-09 64.7 52 59.6
Peaxi162Scf00092g00152 Petunia axillaris HOM05D004188 ORTHO05D004445 8.7e-09 64.7 66 56.1
Actinidia03061 Actinidia chinensis HOM05D004188 ORTHO05D004445 1.1e-08 64.3 49 61.2
FAN11G3469 Fragaria x ananassa HOM05D004188 ORTHO05D004445 1.1e-08 64.3 67 53.7
Carub.0005s1101 Capsella rubella HOM05D004188 ORTHO05D004445 1.5e-08 63.9 69 55.1
THA.LOC104799503 Tarenaya hassleriana HOM05D004188 ORTHO05D004445 1.5e-08 63.9 57 61.4
Lsat_1_v5_gn_2_98481 Lactuca sativa HOM05D004188 ORTHO05D004445 1.9e-08 63.5 56 51.8
Nitab4.5_0012712g0020 Nicotiana tabacum HOM05D004188 ORTHO05D004445 1.9e-08 63.5 55 60.0
Medtr2g094170 Medicago truncatula HOM05D004188 ORTHO05D004445 2.5e-08 63.2 62 51.6
Actinidia24099 Actinidia chinensis HOM05D004188 ORTHO05D004445 3.3e-08 62.8 48 56.2
Manes.04G021600 Manihot esculenta HOM05D004188 ORTHO05D004445 3.3e-08 62.8 68 52.9
VMungo1127G1131 Vigna mungo HOM05D000847 ORTHO05D003278 3.3e-08 62.8 53 64.2
MELO3C026856.2 Cucumis melo HOM05D004188 ORTHO05D004445 4.3e-08 62.4 55 58.2
Ca_05256_v3 Cicer arietinum L. HOM05D004188 ORTHO05D004445 5.7e-08 62.0 51 64.7
ClCG03G002160 Citrullus lanatus HOM05D004188 ORTHO05D004445 5.7e-08 62.0 62 56.5
FAN16G2082 Fragaria x ananassa HOM05D004188 ORTHO05D004445 5.7e-08 62.0 69 52.2
FAN25G0660 Fragaria x ananassa HOM05D004188 ORTHO05D004445 5.7e-08 62.0 67 52.2
MBI07_g19312_MAGBIO Magnolia biondii HOM05D004188 ORTHO05D004445 7.4e-08 61.6 57 57.9
Psat5g278280 Pisum sativum HOM05D004188 ORTHO05D004445 9.7e-08 61.2 69 46.4
Sed0026517 Sechium edule HOM05D004188 ORTHO05D004445 9.7e-08 61.2 59 57.6
DCAR_006061 Daucus carota HOM05D004188 ORTHO05D004445 1.3e-07 60.8 69 50.7
FAN21G0748 Fragaria x ananassa HOM05D004188 ORTHO05D004445 1.3e-07 60.8 51 62.7
CsaV3_1G012810 Cucumis sativus L. HOM05D004188 ORTHO05D004445 2.2e-07 60.1 59 52.5
FvH4_3g32420 Fragaria vesca HOM05D004188 ORTHO05D004445 2.2e-07 60.1 51 62.7
TPR.G11601 Trifolium pratense HOM05D004188 ORTHO05D004445 2.2e-07 60.1 56 53.6
Lalb_Chr14g0374691 Lupinus albus HOM05D004188 ORTHO05D004445 2.8e-07 59.7 69 49.3
Sc06g0010170 Simmondsia chinensis HOM05D004188 ORTHO05D004445 2.8e-07 59.7 54 53.7
ECA248G2476 Erigeron canadensis HOM05D004188 ORTHO05D004445 3.7e-07 59.3 53 56.6
Aa31LG4G14540 Aethionema arabicum HOM05D004188 ORTHO05D004445 4.8e-07 58.9 62 51.6
CiPaw.13G112700 Carya illinoinensis HOM05D004188 ORTHO05D004445 4.8e-07 58.9 68 50.0
Cfa011320 Carpinus fangiana HOM05D004188 ORTHO05D004445 6.3e-07 58.5 57 57.9
Lalb_Chr22g0350231 Lupinus albus HOM05D004188 ORTHO05D004445 6.3e-07 58.5 62 51.6
VMungo1080G0149 Vigna mungo HOM05D004188 ORTHO05D004445 1.1e-06 57.8 56 53.6
Manes.11G144800 Manihot esculenta HOM05D004188 ORTHO05D004445 1.4e-06 57.4 69 46.4
Zm00001eb064740 Zea mays HOM05D004188 ORTHO05D004445 1.4e-06 57.4 57 52.6
TWI31G0432 Tripterygium wilfordii HOM05D004188 ORTHO05D004445 2.4e-06 56.6 57 56.1
HanXRQChr13g0403511 Helianthus annuus HOM05D004188 ORTHO05D004445 3.1e-06 56.2 43 60.5
Lalb_Chr03g0027321 Lupinus albus HOM05D004188 ORTHO05D004445 3.1e-06 56.2 54 55.6
CANSAT56G2191 Cannabis sativa HOM05D004188 ORTHO05D004445 4.1e-06 55.8 51 54.9
Os03g0852400 Oryza sativa ssp. japonica HOM05D004188 ORTHO05D004445 5.3e-06 55.5 45 57.8
THA.LOC104810856 Tarenaya hassleriana HOM05D004188 ORTHO05D004445 5.3e-06 55.5 43 65.1
unitig_699.g19195 Utricularia gibba HOM05D004188 ORTHO05D004445 5.3e-06 55.5 45 62.2
PSO384G1281 Papaver somniferum HOM05D004188 ORTHO05D004445 6.9e-06 55.1 42 59.5
PGR102G1665 Punica granatum HOM05D004188 ORTHO05D004445 6.9e-06 55.1 62 54.8


User provided reference genes

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