Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.21072 Avicennia marina HOM05D001312 ORTHO05D001832 7.5e-73 276.9 127 100.0
MSTRG.21070 Avicennia marina HOM05D001312 ORTHO05D001832 7.8e-70 266.9 127 96.9
Migut.D02327 Erythranthe guttata HOM05D001312 ORTHO05D001832 2.2e-48 195.7 126 72.2
unitig_46.g18236 Utricularia gibba HOM05D001312 ORTHO05D001832 2.9e-40 168.7 121 66.9
Cc01_g09930 Coffea canephora HOM05D001312 ORTHO05D001832 1.1e-36 156.8 121 56.2
HanXRQChr01g0016711 Helianthus annuus HOM05D001312 ORTHO05D001832 2.0e-33 146.0 125 53.6
Nitab4.5_0000442g0240 Nicotiana tabacum HOM05D001312 ORTHO05D001832 2.0e-33 146.0 123 54.5
SGA_v2.0_scaffold27G11600 Striga asiatica HOM05D001312 ORTHO05D001832 5.8e-33 144.4 124 57.3
Nitab4.5_0002571g0030 Nicotiana tabacum HOM05D001312 ORTHO05D001832 1.3e-32 143.3 122 53.3
Sopen11g026500 Solanum pennellii HOM05D001312 ORTHO05D001832 1.7e-32 142.9 121 53.7
HanXRQChr11g0346711 Helianthus annuus HOM05D001312 ORTHO05D001832 2.9e-32 142.1 124 51.6
Dinv29412 Davidia involucrata HOM05D001312 ORTHO05D001832 8.4e-32 140.6 135 51.1
Solyc11g066780.3 Solanum lycopersicum HOM05D001312 ORTHO05D001832 8.4e-32 140.6 121 52.9
Peaxi162Scf00789g00216 Petunia axillaris HOM05D001312 ORTHO05D001832 3.2e-31 138.7 123 52.0
CAN.G644.40 Capsicum annuum HOM05D001312 ORTHO05D001832 9.3e-31 137.1 120 51.7
GSVIVG01031411001 Vitis vinifera HOM05D001312 ORTHO05D001832 9.3e-31 137.1 133 48.1
Dinv12534 Davidia involucrata HOM05D001312 ORTHO05D001832 1.2e-30 136.7 128 52.3
Migut.N02523 Erythranthe guttata HOM05D001312 ORTHO05D001832 1.0e-29 133.7 122 57.4
Manes.04G010300 Manihot esculenta HOM05D001312 ORTHO05D001832 2.3e-29 132.5 129 51.9
Lsat_1_v5_gn_1_61921 Lactuca sativa HOM05D001312 ORTHO05D001832 1.9e-28 129.4 129 47.3
PGSC0003DMG400007126 Solanum tuberosum HOM05D001312 ORTHO05D001832 5.6e-28 127.9 119 50.4
Actinidia00821 Actinidia chinensis HOM05D001312 ORTHO05D001832 2.8e-27 125.6 127 45.7
Duzib168G2332 Durio zibethinus HOM05D001312 ORTHO05D001832 2.8e-27 125.6 129 46.5
vmacro14380 Vaccinium macrocarpon HOM05D001312 ORTHO05D001832 2.4e-26 122.5 123 46.3
QL01p014004 Quercus lobata HOM05D001312 ORTHO05D001832 4.0e-26 121.7 141 47.5
Thecc.09G293200 Theobroma cacao HOM05D001312 ORTHO05D001832 4.0e-26 121.7 130 48.5
TAR623G0291 Trochodendron aralioides HOM05D001312 ORTHO05D001832 9.0e-26 120.6 131 43.5
Ciclev10027677m.g Citrus clementina HOM05D001312 ORTHO05D001832 1.2e-25 120.2 131 48.9
Atru.chr3.3400 Acer truncatum HOM05D001312 ORTHO05D001832 1.5e-25 119.8 129 46.5
COL.COLO4_19275 Corchorus olitorius HOM05D001312 ORTHO05D001832 2.6e-25 119.0 129 48.1
Lj1C219T5 Lonicera japonica HOM05D001312 ORTHO05D001832 2.6e-25 119.0 125 48.8
Cpa.g.sc47.58 Carica papaya HOM05D001312 ORTHO05D001832 5.8e-25 117.9 127 46.5
CAN.G919.4 Capsicum annuum HOM05D001312 ORTHO05D001832 7.6e-25 117.5 119 47.9
Sopen06g031060 Solanum pennellii HOM05D001312 ORTHO05D001832 1.0e-24 117.1 120 48.3
CSS0005615 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D001832 1.7e-24 116.3 124 46.8
Potri.009G150200 Populus trichocarpa HOM05D001312 ORTHO05D001832 1.7e-24 116.3 129 48.1
Cfa010099 Carpinus fangiana HOM05D001312 ORTHO05D001832 2.2e-24 115.9 122 48.4
DCAR_022735 Daucus carota HOM05D001312 ORTHO05D001832 2.2e-24 115.9 126 43.7
Carub.0006s2047 Capsella rubella HOM05D001312 ORTHO05D001832 4.9e-24 114.8 125 44.8
Nn6g35082 Nelumbo nucifera HOM05D001312 ORTHO05D001832 6.5e-24 114.4 136 44.9
Rhsim13G0104700 Rhododendron simsii HOM05D001312 ORTHO05D001832 6.5e-24 114.4 124 50.0
Solyc06g074640.2 Solanum lycopersicum HOM05D001312 ORTHO05D001832 8.4e-24 114.0 120 46.7
Potri.004G189600 Populus trichocarpa HOM05D001312 ORTHO05D001832 2.5e-23 112.5 131 45.8
TWI79G1536 Tripterygium wilfordii HOM05D001312 ORTHO05D001832 3.2e-23 112.1 121 46.3
CARHR190830 Cardamine hirsuta HOM05D001312 ORTHO05D001832 5.5e-23 111.3 127 44.1
Haze_23465 Corylus avellana HOM05D001312 ORTHO05D001832 5.5e-23 111.3 122 46.7
Eucgr.J00416 Eucalyptus grandis HOM05D001312 ORTHO05D001832 5.5e-23 111.3 127 48.0
BcaC03g13911 Brassica carinata HOM05D001312 ORTHO05D001832 7.1e-23 110.9 125 45.6
C02p11220 Brassica napus HOM05D001312 ORTHO05D001832 7.1e-23 110.9 125 45.6
BolC2t07191H Brassica oleracea HOM05D001312 ORTHO05D001832 7.1e-23 110.9 125 45.6
Sp6g22660 Schrenkiella parvula HOM05D001312 ORTHO05D001832 9.3e-23 110.5 125 43.2
Thhalv10012428m.g Eutrema salsugineum HOM05D001312 ORTHO05D001832 1.2e-22 110.2 125 44.8
CiPaw.13G141900 Carya illinoinensis HOM05D001312 ORTHO05D001832 2.1e-22 109.4 129 42.6
Manes.11G155800 Manihot esculenta HOM05D001312 ORTHO05D001832 2.1e-22 109.4 125 47.2
BcaB05g22698 Brassica carinata HOM05D001312 ORTHO05D001832 2.7e-22 109.0 125 44.8
DCAR_006144 Daucus carota HOM05D001312 ORTHO05D001832 2.7e-22 109.0 141 39.0
MD11G1155100 Malus domestica HOM05D001312 ORTHO05D001832 3.5e-22 108.6 125 43.2
BNapus_Darmor_BZH_scaffold_38p00420 Brassica napus HOM05D001312 ORTHO05D001832 4.6e-22 108.2 127 43.3
Aa31LG4G14290 Aethionema arabicum HOM05D001312 ORTHO05D001832 6.0e-22 107.8 128 46.1
BraA02t05684Z Brassica rapa HOM05D001312 ORTHO05D001832 7.9e-22 107.5 129 42.6
Sabra04G0128400 Salix brachista HOM05D001312 ORTHO05D001832 1.3e-21 106.7 125 42.4
ECA248G2284 Erigeron canadensis HOM05D001312 ORTHO05D001832 3.9e-21 105.1 117 47.9
Prupe.6G117600 Prunus persica HOM05D001312 ORTHO05D001832 5.1e-21 104.8 132 43.2
ClCG02G021830 Citrullus lanatus HOM05D001312 ORTHO05D001832 8.7e-21 104.0 124 41.1
Gohir.D09G091966 Gossypium hirsutum HOM05D001312 ORTHO05D001832 8.7e-21 104.0 123 44.7
THA.LOC104799531 Tarenaya hassleriana HOM05D001312 ORTHO05D001832 8.7e-21 104.0 126 45.2
Gorai.006G108600 Gossypium raimondii HOM05D001312 ORTHO05D001832 1.1e-20 103.6 123 44.7
Glyma.13G320100 Glycine max HOM05D001312 ORTHO05D001832 1.5e-20 103.2 131 40.5
Gohir.A09G092100 Gossypium hirsutum HOM05D001312 ORTHO05D001832 1.5e-20 103.2 123 44.7
AL6G33760 Arabidopsis lyrata HOM05D001312 ORTHO05D001832 2.5e-20 102.4 125 42.4
MD03G1132800 Malus domestica HOM05D001312 ORTHO05D001832 2.5e-20 102.4 125 40.0
Nitab4.5_0004926g0010 Nicotiana tabacum HOM05D001312 ORTHO05D001832 3.3e-20 102.1 93 48.4
Rhsim01G0209200 Rhododendron simsii HOM05D001312 ORTHO05D001832 3.3e-20 102.1 122 44.3
Sabra09G0118900 Salix brachista HOM05D001312 ORTHO05D001832 4.3e-20 101.7 121 43.0
BcaC01g06570 Brassica carinata HOM05D001312 ORTHO05D001832 5.7e-20 101.3 126 41.3
C03p12520 Brassica napus HOM05D001312 ORTHO05D001832 5.7e-20 101.3 126 41.3
BcaB01g04696 Brassica carinata HOM05D001312 ORTHO05D001832 7.4e-20 100.9 125 43.2
Carub.0005s1053 Capsella rubella HOM05D001312 ORTHO05D001832 7.4e-20 100.9 128 41.4
PGR119G0461 Punica granatum HOM05D001312 ORTHO05D001832 7.4e-20 100.9 122 42.6
FvH4_3g30100 Fragaria vesca HOM05D001312 ORTHO05D001832 9.7e-20 100.5 130 39.2
FAN11G4030 Fragaria x ananassa HOM05D001312 ORTHO05D001832 9.7e-20 100.5 130 39.2
RcHm_v2.0_Chr5g0055621 Rosa chinensis HOM05D001312 ORTHO05D001832 1.3e-19 100.1 134 37.3
CsaV3_6G014620 Cucumis sativus L. HOM05D001312 ORTHO05D001832 2.8e-19 99.0 125 41.6
TWI75G0682 Tripterygium wilfordii HOM05D001312 ORTHO05D001832 2.8e-19 99.0 122 41.0
AL5G23240 Arabidopsis lyrata HOM05D001312 ORTHO05D001832 6.3e-19 97.8 128 40.6
BolC3t13720H Brassica oleracea HOM05D001312 ORTHO05D001832 8.2e-19 97.4 126 40.5
Sed0012905 Sechium edule HOM05D001312 ORTHO05D001832 1.1e-18 97.1 125 40.8
VMungo1127G0568 Vigna mungo HOM05D001312 ORTHO05D001832 1.1e-18 97.1 124 41.9
A03p10880 Brassica napus HOM05D001312 ORTHO05D001832 1.4e-18 96.7 126 40.5
FAN21G2146 Fragaria x ananassa HOM05D001312 ORTHO05D001832 1.8e-18 96.3 130 35.4
A01p26830 Brassica napus HOM05D001312 ORTHO05D001832 2.4e-18 95.9 130 41.5
BraA01t02612Z Brassica rapa HOM05D001312 ORTHO05D001832 2.4e-18 95.9 130 41.5
Glyma.11G190000 Glycine max HOM05D001312 ORTHO05D001832 2.4e-18 95.9 122 41.8
AT5G35210 Arabidopsis thaliana HOM05D001312 ORTHO05D001832 5.3e-18 94.7 127 40.2
BraA03t10398Z Brassica rapa HOM05D001312 ORTHO05D001832 5.3e-18 94.7 125 40.8
FAN16G2071 Fragaria x ananassa HOM05D001312 ORTHO05D001832 5.3e-18 94.7 130 34.6
PSO063G1518 Papaver somniferum HOM05D001312 ORTHO05D001832 5.3e-18 94.7 130 40.0
PSO339G1313 Papaver somniferum HOM05D001312 ORTHO05D001832 5.3e-18 94.7 132 38.6
EL10Ac9g21057 Beta vulgaris HOM05D001312 ORTHO05D001832 6.9e-18 94.4 125 45.6
TAR633G1314 Trochodendron aralioides HOM05D001312 ORTHO05D001832 9.0e-18 94.0 119 41.2
BcaC09g49653 Brassica carinata HOM05D001312 ORTHO05D001832 1.2e-17 93.6 130 40.8
C01p34190 Brassica napus HOM05D001312 ORTHO05D001832 1.2e-17 93.6 130 40.8
BolC1t03389H Brassica oleracea HOM05D001312 ORTHO05D001832 1.2e-17 93.6 130 40.8
FAN25G0002 Fragaria x ananassa HOM05D001312 ORTHO05D001832 1.2e-17 93.6 130 34.6
Medtr2g084620 Medicago truncatula HOM05D001312 ORTHO05D001832 1.2e-17 93.6 126 40.5
AUR62023958 Chenopodium quinoa HOM05D001312 ORTHO05D001832 4.5e-17 91.7 124 41.9
arahy.Tifrunner.gnm1.ann1.A1GHB6 Arachis hypogaea HOM05D001312 ORTHO05D001832 7.6e-17 90.9 122 38.5
arahy.Tifrunner.gnm1.ann1.UY40LW Arachis hypogaea HOM05D001312 ORTHO05D001832 7.6e-17 90.9 122 38.5
Lj3g0003552 Lotus japonicus HOM05D001312 ORTHO05D001832 7.6e-17 90.9 126 42.1
Nn2g13967 Nelumbo nucifera HOM05D001312 ORTHO05D001832 7.6e-17 90.9 131 38.9
VMungo1080G0366 Vigna mungo HOM05D001312 ORTHO05D001832 1.3e-16 90.1 124 37.9
AUR62031754 Chenopodium quinoa HOM05D001312 ORTHO05D001832 5.0e-16 88.2 116 44.0
Glyma.12G180700 Glycine max HOM05D001312 ORTHO05D001832 5.0e-16 88.2 131 39.7
Phvul.005G128100 Phaseolus vulgaris HOM05D001312 ORTHO05D001832 5.0e-16 88.2 128 37.5
Sc12g0003890 Simmondsia chinensis HOM05D001312 ORTHO05D001832 1.1e-15 87.0 121 40.5
CDE06G0794 Ceratophyllum demersum HOM05D001312 ORTHO05D001832 1.4e-15 86.7 130 40.0
Glyma.12G084300 Glycine max HOM05D001312 ORTHO05D001832 1.9e-15 86.3 153 34.6
Hund07715 Selenicereus undatus HOM05D001312 ORTHO05D001832 2.5e-15 85.9 126 36.5
Peaxi162Scf00157g00417 Petunia axillaris HOM05D001312 ORTHO05D001832 4.2e-15 85.1 63 54.0
Lalb_Chr01g0004711 Lupinus albus HOM05D001312 ORTHO05D001832 4.6e-14 81.6 126 37.3
Lalb_Chr03g0027881 Lupinus albus HOM05D001312 ORTHO05D001832 4.6e-14 81.6 127 39.4
Os11g0148700 Oryza sativa ssp. japonica HOM05D001312 ORTHO05D001832 1.8e-13 79.7 141 35.5
Zm00001eb406520 Zea mays HOM05D001312 ORTHO05D001832 3.9e-13 78.6 143 34.3
Medtr2g084615 Medicago truncatula HOM05D001312 ORTHO05D001832 6.7e-13 77.8 126 34.9
Sc21g0004650 Simmondsia chinensis HOM05D001312 ORTHO05D001832 1.1e-12 77.0 123 35.0
Aqoxy1G00966 Aquilegia oxysepala HOM05D001312 ORTHO05D001832 1.5e-12 76.6 129 34.1
Ah.01g016710 Amaranthus hybridus HOM05D001312 ORTHO05D001832 3.3e-12 75.5 124 41.1
HPP92_026720 Vanilla planifolia HOM05D001312 ORTHO05D001832 5.7e-12 74.7 123 36.6
HPP92_017974 Vanilla planifolia HOM05D001312 ORTHO05D001832 9.7e-12 73.9 123 36.6
CANSAT64G1407 Cannabis sativa HOM05D001312 ORTHO05D001832 3.7e-11 72.0 127 33.1
Phvul.011G089300 Phaseolus vulgaris HOM05D001312 ORTHO05D001832 4.8e-11 71.6 116 36.2
TPR.G32362 Trifolium pratense HOM05D001312 ORTHO05D001832 1.4e-10 70.1 141 33.3
Ca_01686_v3 Cicer arietinum L. HOM05D001312 ORTHO05D001832 2.4e-10 69.3 118 37.3
Actinidia24175 Actinidia chinensis HOM05D001312 ORTHO05D001832 6.9e-10 67.8 70 51.4
Actinidia07206 Actinidia chinensis HOM05D001312 ORTHO05D001832 1.2e-09 67.0 71 52.1
Ca_19363_v3 Cicer arietinum L. HOM05D001312 ORTHO05D001832 2.6e-09 65.9 129 33.3
Ca_30478_v3 Cicer arietinum L. HOM05D001312 ORTHO05D001832 2.6e-09 65.9 129 33.3
Psat5g255240 Pisum sativum HOM05D001312 ORTHO05D001832 1.3e-08 63.5 122 32.0
MELO3C021462.2 Cucumis melo HOM05D001312 ORTHO05D001832 2.5e-07 59.3 94 40.4


User provided reference genes

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