Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.20317 Avicennia marina HOM05D007320 ORTHO05D009290 6.1e-236 820.5 422 100.0
SalBow8G4737 Salvia bowleyana HOM05D007320 ORTHO05D009290 2.5e-112 409.8 319 65.2
Migut.L01118 Erythranthe guttata HOM05D007320 ORTHO05D009290 4.2e-112 409.1 321 67.6
CAN.G756.7 Capsicum annuum HOM05D007320 ORTHO05D009290 6.1e-111 405.2 317 65.9
PGSC0003DMG400001712 Solanum tuberosum HOM05D007320 ORTHO05D009290 8.8e-110 401.4 316 64.2
Nitab4.5_0001895g0020 Nicotiana tabacum HOM05D007320 ORTHO05D009290 1.5e-109 400.6 299 66.2
SalBow8G5340 Salvia bowleyana HOM05D007320 ORTHO05D009290 1.5e-109 400.6 319 63.9
Nitab4.5_0008210g0010 Nicotiana tabacum HOM05D007320 ORTHO05D009290 1.3e-108 397.5 314 63.4
Atru.chr6.2840 Acer truncatum HOM05D007320 ORTHO05D009290 1.7e-108 397.1 316 62.0
Migut.C00284 Erythranthe guttata HOM05D007320 ORTHO05D009290 2.2e-108 396.7 336 65.2
Solyc01g088490.3 Solanum lycopersicum HOM05D007320 ORTHO05D009290 1.4e-107 394.0 316 62.3
Sopen01g035350 Solanum pennellii HOM05D007320 ORTHO05D009290 7.0e-107 391.7 316 62.3
Ciclev10017507m.g Citrus clementina HOM05D007320 ORTHO05D009290 1.9e-104 383.6 318 59.4
Migut.D01592 Erythranthe guttata HOM05D007320 ORTHO05D009290 9.4e-104 381.3 336 62.2
SGA_v2.0_scaffold313G48283 Striga asiatica HOM05D007320 ORTHO05D009290 2.1e-103 380.2 327 60.2
Actinidia11122 Actinidia chinensis HOM05D007320 ORTHO05D009290 2.7e-103 379.8 317 60.3
TWI59G0750 Tripterygium wilfordii HOM05D007320 ORTHO05D009290 6.1e-103 378.6 318 59.7
Oeu000571.1 Olea europaea HOM05D007320 ORTHO05D009290 8.0e-103 378.3 332 60.2
CiPaw.04G130300 Carya illinoinensis HOM05D007320 ORTHO05D009290 6.7e-102 375.2 316 61.1
Cc05_g07980 Coffea canephora HOM05D007320 ORTHO05D009290 4.4e-101 372.5 311 62.1
Cpa.g.sc209.6 Carica papaya HOM05D007320 ORTHO05D009290 1.1e-96 357.8 342 56.1
ClCG02G009070 Citrullus lanatus HOM05D007320 ORTHO05D009290 3.2e-96 356.3 315 57.5
Dinv15897 Davidia involucrata HOM05D007320 ORTHO05D009290 7.2e-96 355.1 353 53.5
Glyma.12G208100 Glycine max HOM05D007320 ORTHO05D009290 1.6e-95 354.0 318 56.6
Manes.13G139600 Manihot esculenta HOM05D007320 ORTHO05D009290 6.1e-95 352.1 316 57.0
Gohir.A05G253000 Gossypium hirsutum HOM05D007320 ORTHO05D009290 8.0e-95 351.7 318 56.3
ECA234G2345 Erigeron canadensis HOM05D007320 ORTHO05D009290 1.4e-94 350.9 336 55.4
Gorai.009G266400 Gossypium raimondii HOM05D007320 ORTHO05D009290 4.0e-94 349.4 318 56.0
Gohir.D05G254900 Gossypium hirsutum HOM05D007320 ORTHO05D009290 5.2e-94 349.0 318 55.7
Phvul.005G098950 Phaseolus vulgaris HOM05D007320 ORTHO05D009290 5.2e-94 349.0 319 56.1
Hund07849 Selenicereus undatus HOM05D007320 ORTHO05D009290 1.5e-93 347.4 327 54.1
Haze_13306 Corylus avellana HOM05D007320 ORTHO05D009290 1.7e-92 344.0 313 57.8
VMungo1080G0443 Vigna mungo HOM05D007320 ORTHO05D009290 4.8e-92 342.4 319 55.5
CsaV3_2G004500 Cucumis sativus L. HOM05D007320 ORTHO05D009290 8.3e-92 341.7 318 54.1
Cfa014690 Carpinus fangiana HOM05D007320 ORTHO05D009290 1.1e-91 341.3 316 57.3
GSVIVG01020656001 Vitis vinifera HOM05D007320 ORTHO05D009290 1.8e-91 340.5 318 55.7
HanXRQChr17g0565321 Helianthus annuus HOM05D007320 ORTHO05D009290 2.4e-91 340.1 317 54.3
Lalb_Chr25g0279081 Lupinus albus HOM05D007320 ORTHO05D009290 2.0e-90 337.0 317 54.9
Peaxi162Scf00745g00038 Petunia axillaris HOM05D007320 ORTHO05D009290 1.7e-89 334.0 316 56.0
unitig_62.g23164 Utricularia gibba HOM05D007320 ORTHO05D009290 3.8e-89 332.8 318 55.0
Ca_01474_v3 Cicer arietinum L. HOM05D007320 ORTHO05D009290 5.0e-89 332.4 317 53.6
Dinv19981 Davidia involucrata HOM05D007320 ORTHO05D009290 5.0e-89 332.4 299 57.5
Nn3g20750 Nelumbo nucifera HOM05D007320 ORTHO05D009290 6.6e-89 332.0 332 54.2
Aa31LG1G7290 Aethionema arabicum HOM05D007320 ORTHO05D009290 8.6e-89 331.6 321 52.0
RcHm_v2.0_Chr0c20g0500221 Rosa chinensis HOM05D007320 ORTHO05D009290 1.1e-88 331.3 312 55.8
Rhsim06G0135200 Rhododendron simsii HOM05D007320 ORTHO05D009290 5.5e-88 328.9 316 55.7
vmacro12358 Vaccinium macrocarpon HOM05D007320 ORTHO05D009290 8.0e-87 325.1 315 54.9
COL.COLO4_26851 Corchorus olitorius HOM05D007320 ORTHO05D009290 6.8e-86 322.0 323 51.7
Hma1.2p1_0002F.1_g002500 Hydrangea macrophylla HOM05D007320 ORTHO05D009290 2.0e-85 320.5 323 53.3
FAN10G1335 Fragaria x ananassa HOM05D007320 ORTHO05D009290 3.4e-85 319.7 312 53.2
Lj1P690T28 Lonicera japonica HOM05D007320 ORTHO05D009290 3.4e-85 319.7 318 53.8
Sed0016711 Sechium edule HOM05D007320 ORTHO05D009290 3.4e-85 319.7 318 52.8
FvH4_7g08410 Fragaria vesca HOM05D007320 ORTHO05D009290 9.8e-85 318.2 312 52.9
FAN03G0990 Fragaria x ananassa HOM05D007320 ORTHO05D009290 9.8e-85 318.2 309 53.1
FAN10G4046 Fragaria x ananassa HOM05D007320 ORTHO05D009290 9.8e-85 318.2 318 52.2
CSS0012636 Camellia sinensis var. sinensis HOM05D007320 ORTHO05D009290 1.3e-84 317.8 316 55.1
Lj3g0010689 Lotus japonicus HOM05D007320 ORTHO05D009290 1.7e-84 317.4 323 52.3
Medtr2g090885 Medicago truncatula HOM05D007320 ORTHO05D009290 4.9e-84 315.8 317 52.1
MD09G1241100 Malus domestica HOM05D007320 ORTHO05D009290 1.4e-83 314.3 336 50.6
Lsat_1_v5_gn_4_28301 Lactuca sativa HOM05D007320 ORTHO05D009290 7.8e-82 308.5 309 52.4
Prupe.3G125800 Prunus persica HOM05D007320 ORTHO05D009290 1.0e-81 308.1 341 50.1
CANSAT64G2476 Cannabis sativa HOM05D007320 ORTHO05D009290 1.3e-81 307.8 323 52.0
Thecc.08G174300 Theobroma cacao HOM05D007320 ORTHO05D009290 2.3e-81 307.0 323 51.7
Thhalv10008110m.g Eutrema salsugineum HOM05D007320 ORTHO05D009290 5.0e-81 305.8 320 49.7
AT1G06270 Arabidopsis thaliana HOM05D007320 ORTHO05D009290 8.6e-81 305.1 320 50.0
Sp1g05080 Schrenkiella parvula HOM05D007320 ORTHO05D009290 8.6e-81 305.1 320 50.3
CARHR005830 Cardamine hirsuta HOM05D007320 ORTHO05D009290 1.9e-80 303.9 337 48.4
AL1G16280 Arabidopsis lyrata HOM05D007320 ORTHO05D009290 2.5e-80 303.5 320 50.0
BcaB02g06809 Brassica carinata HOM05D007320 ORTHO05D009290 7.3e-80 302.0 316 50.0
Sabra13G0103100 Salix brachista HOM05D007320 ORTHO05D009290 7.3e-80 302.0 317 50.8
Carub.0001s0564 Capsella rubella HOM05D007320 ORTHO05D009290 1.2e-79 301.2 316 49.4
DCAR_013053 Daucus carota HOM05D007320 ORTHO05D009290 1.0e-78 298.1 312 49.4
BolC5t29229H Brassica oleracea HOM05D007320 ORTHO05D009290 5.2e-78 295.8 317 49.8
EL10Ac2g02568 Beta vulgaris HOM05D007320 ORTHO05D009290 6.8e-78 295.4 374 44.9
BcaC05g24288 Brassica carinata HOM05D007320 ORTHO05D009290 8.9e-78 295.0 317 49.8
C05p04580 Brassica napus HOM05D007320 ORTHO05D009290 8.9e-78 295.0 317 49.8
THA.LOC104800856 Tarenaya hassleriana HOM05D007320 ORTHO05D009290 4.4e-77 292.7 313 51.4
AUR62035379 Chenopodium quinoa HOM05D007320 ORTHO05D009290 5.8e-77 292.4 318 48.4
Psat5g275040 Pisum sativum HOM05D007320 ORTHO05D009290 7.5e-77 292.0 322 49.7
A10p04990 Brassica napus HOM05D007320 ORTHO05D009290 9.8e-77 291.6 317 49.2
BraA10t42760Z Brassica rapa HOM05D007320 ORTHO05D009290 9.8e-77 291.6 317 49.2
Potri.013G124100 Populus trichocarpa HOM05D007320 ORTHO05D009290 2.2e-76 290.4 317 49.2
TPR.G6440 Trifolium pratense HOM05D007320 ORTHO05D009290 4.9e-76 289.3 323 48.0
MBI06_g25716_MAGBIO Magnolia biondii HOM05D007320 ORTHO05D009290 9.2e-75 285.0 327 49.8
TAR627G0001 Trochodendron aralioides HOM05D007320 ORTHO05D009290 2.7e-74 283.5 327 49.8
Sc07g0005270 Simmondsia chinensis HOM05D007320 ORTHO05D009290 7.8e-74 282.0 324 48.5
TPR.G5736 Trifolium pratense HOM05D007320 ORTHO05D009290 3.1e-70 270.0 270 51.1
Eucgr.F01954 Eucalyptus grandis HOM05D007320 ORTHO05D009290 9.2e-67 258.5 318 44.3
PGR083G2305 Punica granatum HOM05D007320 ORTHO05D009290 3.6e-63 246.5 337 42.7
SHI10502 Sapria himalayana HOM05D007320 ORTHO05D009290 3.6e-63 246.5 313 45.0
TPR.G34643 Trifolium pratense HOM05D007320 ORTHO05D009290 3.0e-57 226.9 208 54.8
AUR62024073 Chenopodium quinoa HOM05D007320 ORTHO05D009290 5.6e-56 222.6 231 49.4
MELO3C004341.2 Cucumis melo HOM05D007320 ORTHO05D009290 5.6e-56 222.6 216 51.4
arahy.Tifrunner.gnm1.ann1.CSM94Q Arachis hypogaea HOM05D007320 ORTHO05D009290 1.2e-45 188.3 162 54.9
arahy.Tifrunner.gnm1.ann1.66V1NK Arachis hypogaea HOM05D007320 ORTHO05D009290 6.4e-44 182.6 150 56.0
Phvul.005G098533 Phaseolus vulgaris HOM05D007320 ORTHO05D009290 1.2e-42 178.3 160 58.8
Cpa.g.sc209.4 Carica papaya HOM05D007320 ORTHO05D009290 5.4e-35 152.9 184 46.2
SalBow7G0970 Salvia bowleyana HOM05D000555 ORTHO05D000646 9.3e-35 152.1 135 57.8
PGSC0003DMG401001710 Solanum tuberosum HOM05D007320 ORTHO05D009290 8.1e-31 139.0 113 63.7
Sc21g0003330 Simmondsia chinensis HOM05D007320 ORTHO05D009290 6.7e-25 119.4 173 42.2
Dinv15900 Davidia involucrata HOM05D007320 ORTHO05D009290 4.0e-22 110.2 183 38.8
Sc21g0003340 Simmondsia chinensis HOM05D007320 ORTHO05D009290 5.3e-22 109.8 99 53.5
MELO3C021360.2 Cucumis melo HOM05D007320 ORTHO05D009290 2.2e-20 104.4 146 42.5
vmacro09236 Vaccinium macrocarpon HOM05D002311 ORTHO05D006991 1.7e-12 78.2 98 51.0
MSTRG.14318 Avicennia marina HOM05D002311 ORTHO05D006991 8.5e-12 75.9 99 52.5
arahy.Tifrunner.gnm1.ann1.5PR57S Arachis hypogaea HOM05D007320 ORTHO05D009290 1.9e-11 74.7 114 40.4
Sopen07g027430 Solanum pennellii HOM05D002311 ORTHO05D006991 3.6e-10 70.5 97 46.4
SGA_v2.0_scaffold109G31124 Striga asiatica HOM05D002311 ORTHO05D006991 4.6e-10 70.1 99 49.5
Peaxi162Scf00102g01049 Petunia axillaris HOM05D007320 ORTHO05D009290 6.1e-10 69.7 79 50.6
Solyc07g053470.4 Solanum lycopersicum HOM05D002311 ORTHO05D006991 6.1e-10 69.7 97 46.4
Nn1g06356 Nelumbo nucifera HOM05D002311 ORTHO05D006991 7.9e-10 69.3 98 44.9
PGSC0003DMG400009402 Solanum tuberosum HOM05D002311 ORTHO05D006991 1.0e-09 68.9 97 45.4
Nitab4.5_0006973g0050 Nicotiana tabacum HOM05D002311 ORTHO05D006991 2.3e-09 67.8 96 45.8
Cfa013418 Carpinus fangiana HOM05D000602 ORTHO05D007338 3.0e-09 67.4 191 27.7
Migut.H02161 Erythranthe guttata HOM05D002311 ORTHO05D006991 3.9e-09 67.0 99 47.5
Thhalv10016352m.g Eutrema salsugineum HOM05D002311 ORTHO05D006991 3.9e-09 67.0 99 45.5
Actinidia10986 Actinidia chinensis HOM05D002311 ORTHO05D006991 5.1e-09 66.6 96 45.8
Dinv19985 Davidia involucrata HOM05D002311 ORTHO05D006991 5.1e-09 66.6 96 45.8
Peaxi162Scf00189g00130 Petunia axillaris HOM05D002311 ORTHO05D006991 5.1e-09 66.6 96 43.8
Oeu064837.1 Olea europaea HOM05D002311 ORTHO05D006991 6.7e-09 66.2 98 49.0
CSS0011338 Camellia sinensis var. sinensis HOM05D002311 ORTHO05D006991 2.5e-08 64.3 99 46.5
CSS0038286 Camellia sinensis var. sinensis HOM05D002311 ORTHO05D006991 2.5e-08 64.3 99 46.5
Rhsim04G0072400 Rhododendron simsii HOM05D002311 ORTHO05D006991 2.5e-08 64.3 98 46.9
Aa31LG5G5860 Aethionema arabicum HOM05D002311 ORTHO05D006991 3.3e-08 63.9 102 44.1
Sed0021656 Sechium edule HOM05D002311 ORTHO05D006991 3.3e-08 63.9 96 42.7
Phvul.011G116300 Phaseolus vulgaris HOM05D002311 ORTHO05D006991 4.3e-08 63.5 96 44.8
Dinv02422 Davidia involucrata HOM05D002311 ORTHO05D006991 5.7e-08 63.2 102 46.1
Lsat_1_v5_gn_8_137561 Lactuca sativa HOM05D002311 ORTHO05D006991 7.4e-08 62.8 101 42.6
PSO017G6569 Papaver somniferum HOM05D007486 ORTHO05D003673 9.7e-08 62.4 199 26.6
Manes.13G140000 Manihot esculenta HOM05D002311 ORTHO05D006991 1.3e-07 62.0 98 45.9
Lj4g0021408 Lotus japonicus HOM05D003900 ORTHO05D015804 1.7e-07 61.6 192 25.0
Sabra02G0188800 Salix brachista HOM05D007486 ORTHO05D003673 1.7e-07 61.6 176 26.1
BraA04t17905Z Brassica rapa HOM05D002311 ORTHO05D006991 2.2e-07 61.2 99 40.4
FAN09G1847 Fragaria x ananassa HOM05D002311 ORTHO05D006991 2.2e-07 61.2 96 41.7
Cpa.g.sc8.109 Carica papaya HOM05D007486 ORTHO05D003673 2.8e-07 60.8 176 25.0
FvH4_6g26910 Fragaria vesca HOM05D002311 ORTHO05D006991 2.8e-07 60.8 96 41.7
MELO3C018848.2 Cucumis melo HOM05D002311 ORTHO05D006991 3.7e-07 60.5 99 41.4
PGR042G1338 Punica granatum HOM05D002311 ORTHO05D006991 3.7e-07 60.5 96 46.9
A04p23800 Brassica napus HOM05D002311 ORTHO05D006991 4.8e-07 60.1 99 39.4
FAN14G0051 Fragaria x ananassa HOM05D002311 ORTHO05D006991 4.8e-07 60.1 96 40.6
AT2G31060 Arabidopsis thaliana HOM05D002311 ORTHO05D006991 6.3e-07 59.7 96 43.8
DCAR_013050 Daucus carota HOM05D002311 ORTHO05D006991 6.3e-07 59.7 100 45.0
QL08p040922 Quercus lobata HOM05D002311 ORTHO05D006991 6.3e-07 59.7 96 45.8
BcaB06g28481 Brassica carinata HOM05D002311 ORTHO05D006991 8.2e-07 59.3 99 39.4
C04p60290 Brassica napus HOM05D002311 ORTHO05D006991 8.2e-07 59.3 99 39.4
BolC4t27528H Brassica oleracea HOM05D002311 ORTHO05D006991 8.2e-07 59.3 99 39.4
Cc05_g07960 Coffea canephora HOM05D002311 ORTHO05D006991 8.2e-07 59.3 104 45.2
Atru.chr3.942 Acer truncatum HOM05D007700 ORTHO05D009669 1.4e-06 58.5 157 23.6
AL4G26180 Arabidopsis lyrata HOM05D002311 ORTHO05D006991 1.4e-06 58.5 96 42.7
Carub.0004s1229 Capsella rubella HOM05D002311 ORTHO05D006991 1.4e-06 58.5 96 42.7
CARHR124590 Cardamine hirsuta HOM05D002311 ORTHO05D006991 1.4e-06 58.5 96 42.7
CsaV3_7G003270 Cucumis sativus L. HOM05D002311 ORTHO05D006991 1.4e-06 58.5 101 42.6
Cfa014682 Carpinus fangiana HOM05D002311 ORTHO05D006991 1.8e-06 58.2 104 44.2
Sp4g13530 Schrenkiella parvula HOM05D002311 ORTHO05D006991 1.8e-06 58.2 100 43.0
SGA_v2.0_scaffold120G32959 Striga asiatica HOM05D007145 ORTHO05D008952 2.4e-06 57.8 201 24.9
THA.LOC104800851 Tarenaya hassleriana HOM05D002311 ORTHO05D006991 2.4e-06 57.8 99 40.4
MBI06_g05054_MAGBIO Magnolia biondii HOM05D005362 ORTHO05D006895 3.1e-06 57.4 156 26.9
SEGI_16355 Sequoiadendron giganteum HOM05D004271 ORTHO05D006011 3.1e-06 57.4 99 32.3
Atru.chr6.2843 Acer truncatum HOM05D002311 ORTHO05D006991 4.1e-06 57.0 99 43.4
GSVIVG01020652001 Vitis vinifera HOM05D002311 ORTHO05D006991 4.1e-06 57.0 96 41.7
FAN02G0704 Fragaria x ananassa HOM05D000518 ORTHO05D001974 5.3e-06 56.6 100 44.0
Medtr7g082160 Medicago truncatula HOM05D008684 ORTHO05D010796 5.3e-06 56.6 214 22.0
BcaB01g04069 Brassica carinata HOM05D002311 ORTHO05D006991 6.9e-06 56.2 96 41.7
Haze_13288 Corylus avellana HOM05D002311 ORTHO05D034082 6.9e-06 56.2 104 45.2
Medtr8g005870 Medicago truncatula HOM05D007700 ORTHO05D009669 6.9e-06 56.2 111 27.0
TAR626G0705 Trochodendron aralioides HOM05D002311 ORTHO05D006991 6.9e-06 56.2 98 41.8
Zm00001eb153490 Zea mays HOM05D002311 ORTHO05D006991 6.9e-06 56.2 59 55.9


User provided reference genes

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