Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.19386 Avicennia marina HOM05D004854 ORTHO05D005854 6.9e-36 154.1 119 100.0
Migut.J00819 Erythranthe guttata HOM05D004854 ORTHO05D005854 2.2e-26 122.5 73 86.3
MSTRG.26532 Avicennia marina HOM05D004854 ORTHO05D005854 3.8e-26 121.7 71 85.9
SGA_v2.0_scaffold21G09635 Striga asiatica HOM05D004854 ORTHO05D005854 2.1e-24 115.9 121 84.3
Oeu064534.1 Olea europaea HOM05D004854 ORTHO05D005854 1.3e-23 113.2 70 82.9
Peaxi162Scf00324g00719 Petunia axillaris HOM05D004854 ORTHO05D005854 1.3e-23 113.2 68 85.3
Oeu000974.1 Olea europaea HOM05D004854 ORTHO05D005854 1.8e-23 112.8 74 77.0
CAN.G86.2 Capsicum annuum HOM05D004854 ORTHO05D005854 2.3e-23 112.5 68 82.4
Nitab4.5_0000074g0010 Nicotiana tabacum HOM05D004854 ORTHO05D005854 3.0e-23 112.1 68 83.8
Nitab4.5_0012849g0010 Nicotiana tabacum HOM05D004854 ORTHO05D005854 3.0e-23 112.1 68 83.8
Oeu044703.1 Olea europaea HOM05D004854 ORTHO05D005854 5.1e-23 111.3 68 83.8
SGA_v2.0_scaffold41G15867 Striga asiatica HOM05D004854 ORTHO05D005854 5.1e-23 111.3 70 78.6
Oeu044701.1 Olea europaea HOM05D004854 ORTHO05D005854 8.7e-23 110.5 70 80.0
QL11p004841 Quercus lobata HOM05D004854 ORTHO05D005854 8.7e-23 110.5 70 80.0
Atru.chr12.1305 Acer truncatum HOM05D004854 ORTHO05D005854 1.5e-22 109.8 71 76.1
PGSC0003DMG400008513 Solanum tuberosum HOM05D004854 ORTHO05D005854 1.5e-22 109.8 68 80.9
SalBow5G3614 Salvia bowleyana HOM05D004854 ORTHO05D005854 3.3e-22 108.6 70 81.4
vmacro20836 Vaccinium macrocarpon HOM05D004854 ORTHO05D005854 3.3e-22 108.6 69 79.7
Dinv26446 Davidia involucrata HOM05D004854 ORTHO05D005854 4.3e-22 108.2 68 80.9
Solyc07g009330.4 Solanum lycopersicum HOM05D004854 ORTHO05D005854 4.3e-22 108.2 68 79.4
Rhsim01G0120500 Rhododendron simsii HOM05D004854 ORTHO05D005854 5.7e-22 107.8 67 82.1
Actinidia29956 Actinidia chinensis HOM05D004854 ORTHO05D005854 7.4e-22 107.5 71 76.1
PGR044G2628 Punica granatum HOM05D004854 ORTHO05D005854 7.4e-22 107.5 68 82.4
PGR109G0004 Punica granatum HOM05D004854 ORTHO05D005854 7.4e-22 107.5 68 82.4
Sc26g0002890 Simmondsia chinensis HOM05D004854 ORTHO05D005854 7.4e-22 107.5 71 73.2
Dinv25401 Davidia involucrata HOM05D004854 ORTHO05D005854 9.7e-22 107.1 69 76.8
Potri.009G032600 Populus trichocarpa HOM05D004854 ORTHO05D005854 9.7e-22 107.1 71 80.3
PSO423G0276 Papaver somniferum HOM05D004854 ORTHO05D005854 1.3e-21 106.7 71 70.4
Sopen07g005080 Solanum pennellii HOM05D004854 ORTHO05D005854 1.3e-21 106.7 68 77.9
PSO596G0050 Papaver somniferum HOM05D004854 ORTHO05D005854 2.2e-21 105.9 71 70.4
Potri.003G010200 Populus trichocarpa HOM05D004854 ORTHO05D005854 2.2e-21 105.9 71 77.5
CSS0022850 Camellia sinensis var. sinensis HOM05D004854 ORTHO05D005854 2.8e-21 105.5 67 79.1
Ciclev10002863m.g Citrus clementina HOM05D004854 ORTHO05D005854 2.8e-21 105.5 122 77.0
Sed0005886 Sechium edule HOM05D004854 ORTHO05D005854 3.7e-21 105.1 70 72.9
CANSAT11G1984 Cannabis sativa HOM05D004854 ORTHO05D005854 4.8e-21 104.8 119 79.8
Glyma.05G174300 Glycine max HOM05D004854 ORTHO05D005854 6.3e-21 104.4 75 74.7
Glyma.08G131500 Glycine max HOM05D004854 ORTHO05D005854 6.3e-21 104.4 75 74.7
Sed0001835 Sechium edule HOM05D004854 ORTHO05D005854 6.3e-21 104.4 70 74.3
Ah.05g168230 Amaranthus hybridus HOM05D004854 ORTHO05D005854 8.2e-21 104.0 70 72.9
AUR62026626 Chenopodium quinoa HOM05D004854 ORTHO05D005854 8.2e-21 104.0 70 75.7
Phvul.002G259300 Phaseolus vulgaris HOM05D004854 ORTHO05D005854 8.2e-21 104.0 73 71.2
TWI38G1790 Tripterygium wilfordii HOM05D004854 ORTHO05D005854 8.2e-21 104.0 119 73.9
GSVIVG01010910001 Vitis vinifera HOM05D004854 ORTHO05D005854 8.2e-21 104.0 67 77.6
Ah.16g108570 Amaranthus hybridus HOM05D004854 ORTHO05D005854 1.4e-20 103.2 70 72.9
AL8G33260 Arabidopsis lyrata HOM05D004854 ORTHO05D005854 1.4e-20 103.2 70 74.3
BcaC03g14166 Brassica carinata HOM05D004854 ORTHO05D005854 1.4e-20 103.2 70 74.3
BcaC04g19981 Brassica carinata HOM05D004854 ORTHO05D005854 1.4e-20 103.2 70 74.3
CiPaw.08G034100 Carya illinoinensis HOM05D004854 ORTHO05D005854 1.4e-20 103.2 70 75.7
SEGI_03932 Sequoiadendron giganteum HOM05D004854 ORTHO05D005854 1.4e-20 103.2 72 68.1
PGR142G3975 Punica granatum HOM05D004854 ORTHO05D005854 1.8e-20 102.8 77 66.2
Sabra03G0005200 Salix brachista HOM05D004854 ORTHO05D005854 1.8e-20 102.8 78 69.2
Eucgr.C02261 Eucalyptus grandis HOM05D004854 ORTHO05D005854 2.4e-20 102.4 67 77.6
Eucgr.C02263 Eucalyptus grandis HOM05D004854 ORTHO05D005854 2.4e-20 102.4 67 77.6
TWI38G2070 Tripterygium wilfordii HOM05D004854 ORTHO05D005854 2.4e-20 102.4 119 73.9
AUR62034880 Chenopodium quinoa HOM05D004854 ORTHO05D005854 3.1e-20 102.1 70 74.3
MELO3C003999.2 Cucumis melo HOM05D004854 ORTHO05D005854 3.1e-20 102.1 70 71.4
Manes.06G021300 Manihot esculenta HOM05D004854 ORTHO05D005854 3.1e-20 102.1 69 78.3
BcaB05g22334 Brassica carinata HOM05D004854 ORTHO05D005854 4.1e-20 101.7 70 72.9
BraA02t05931Z Brassica rapa HOM05D004854 ORTHO05D005854 4.1e-20 101.7 70 72.9
Dinv25400 Davidia involucrata HOM05D004854 ORTHO05D005854 4.1e-20 101.7 66 75.8
Sp6g19020 Schrenkiella parvula HOM05D004854 ORTHO05D005854 5.3e-20 101.3 70 74.3
THA.LOC104813509 Tarenaya hassleriana HOM05D004854 ORTHO05D005854 5.3e-20 101.3 70 72.9
Actinidia39348 Actinidia chinensis HOM05D000406 ORTHO05D003425 6.9e-20 100.9 67 76.1
Cpa.g.sc95.32 Carica papaya HOM05D004854 ORTHO05D005854 6.9e-20 100.9 74 68.9
CsaV3_2G008580 Cucumis sativus L. HOM05D004854 ORTHO05D005854 6.9e-20 100.9 69 72.5
A02p08620 Brassica napus HOM05D004854 ORTHO05D005854 9.0e-20 100.5 69 73.9
Carub.0008s1780 Capsella rubella HOM05D004854 ORTHO05D005854 9.0e-20 100.5 70 70.0
ClCG11G011930 Citrullus lanatus HOM05D004854 ORTHO05D005854 9.0e-20 100.5 70 71.4
Thhalv10026301m.g Eutrema salsugineum HOM05D004854 ORTHO05D005854 9.0e-20 100.5 71 73.2
Psat7g058720 Pisum sativum HOM05D004854 ORTHO05D005854 9.0e-20 100.5 75 70.7
arahy.Tifrunner.gnm1.ann1.9B8HPN Arachis hypogaea HOM05D004854 ORTHO05D005854 1.2e-19 100.1 70 72.9
arahy.Tifrunner.gnm1.ann1.P9UE85 Arachis hypogaea HOM05D004854 ORTHO05D005854 1.2e-19 100.1 70 72.9
Cfa013427 Carpinus fangiana HOM05D004854 ORTHO05D005854 1.2e-19 100.1 67 74.6
Ca_17781_v3 Cicer arietinum L. HOM05D004854 ORTHO05D005854 1.2e-19 100.1 75 69.3
Eucgr.A01410 Eucalyptus grandis HOM05D004854 ORTHO05D005854 1.2e-19 100.1 67 76.1
MD16G1253100 Malus domestica HOM05D004854 ORTHO05D005854 1.2e-19 100.1 70 75.7
Prupe.1G079500 Prunus persica HOM05D004854 ORTHO05D005854 1.2e-19 100.1 70 75.7
TWI18G0069 Tripterygium wilfordii HOM05D004854 ORTHO05D005854 1.2e-19 100.1 119 73.9
ECA247G3496 Erigeron canadensis HOM05D004854 ORTHO05D005854 1.5e-19 99.8 70 71.4
MBI13_g31550_MAGBIO Magnolia biondii HOM05D004854 ORTHO05D005854 1.5e-19 99.8 68 73.5
Sp7g23910 Schrenkiella parvula HOM05D004854 ORTHO05D005854 1.5e-19 99.8 70 74.3
CDE05G0266 Ceratophyllum demersum HOM05D000177 ORTHO05D008165 2.0e-19 99.4 67 74.6
CDE05G2165 Ceratophyllum demersum HOM05D004854 ORTHO05D005854 2.0e-19 99.4 67 74.6
HanXRQChr10g0297881 Helianthus annuus HOM05D004854 ORTHO05D005854 2.0e-19 99.4 70 71.4
Hund26676 Selenicereus undatus HOM05D004854 ORTHO05D005854 2.0e-19 99.4 71 69.0
TAR625G0051 Trochodendron aralioides HOM05D004854 ORTHO05D005854 2.0e-19 99.4 67 76.1
AL7G27120 Arabidopsis lyrata HOM05D004854 ORTHO05D005854 4.5e-19 98.2 70 71.4
arahy.Tifrunner.gnm1.ann1.P39ID1 Arachis hypogaea HOM05D004854 ORTHO05D005854 4.5e-19 98.2 73 69.9
THA.LOC104811780 Tarenaya hassleriana HOM05D004854 ORTHO05D005854 4.5e-19 98.2 70 70.0
unitig_899.g15189 Utricularia gibba HOM05D004854 ORTHO05D005854 4.5e-19 98.2 70 71.4
MD13G1245200 Malus domestica HOM05D004854 ORTHO05D005854 5.9e-19 97.8 70 72.9
C02p14390 Brassica napus HOM05D004854 ORTHO05D005854 7.7e-19 97.4 68 72.1
BolC2t07563H Brassica oleracea HOM05D004854 ORTHO05D005854 7.7e-19 97.4 68 72.1
BolC9t57762H Brassica oleracea HOM05D004854 ORTHO05D005854 7.7e-19 97.4 68 72.1
BraA10t43555Z Brassica rapa HOM05D004854 ORTHO05D005854 7.7e-19 97.4 68 72.1
CARHR233360 Cardamine hirsuta HOM05D004854 ORTHO05D005854 7.7e-19 97.4 71 71.8
CARHR271090 Cardamine hirsuta HOM05D004854 ORTHO05D005854 1.0e-18 97.1 70 71.4
Lsat_1_v5_gn_9_31040 Lactuca sativa HOM05D004854 ORTHO05D005854 1.0e-18 97.1 70 68.6
Sabra09G0023200 Salix brachista HOM05D004854 ORTHO05D005854 1.0e-18 97.1 68 76.5
AT4G25890 Arabidopsis thaliana HOM05D004854 ORTHO05D005854 1.3e-18 96.7 70 70.0
Os01g0231700 Oryza sativa ssp. japonica HOM05D004854 ORTHO05D005854 1.7e-18 96.3 74 63.5
Os06g0701400 Oryza sativa ssp. japonica HOM05D004854 ORTHO05D005854 1.7e-18 96.3 72 65.3
VMungo0251G0447 Vigna mungo HOM05D004854 ORTHO05D005854 1.7e-18 96.3 71 67.6
Carub.0007s1506 Capsella rubella HOM05D004854 ORTHO05D005854 2.2e-18 95.9 71 70.4
Medtr8g089790 Medicago truncatula HOM05D004854 ORTHO05D005854 2.2e-18 95.9 75 64.0
DCAR_003035 Daucus carota HOM05D004854 ORTHO05D005854 2.9e-18 95.5 71 70.4
A10p14720 Brassica napus HOM05D004854 ORTHO05D005854 3.8e-18 95.1 68 70.6
C09p49130 Brassica napus HOM05D004854 ORTHO05D005854 3.8e-18 95.1 68 70.6
Migut.L01900 Erythranthe guttata HOM05D004854 ORTHO05D005854 3.8e-18 95.1 61 75.4
Thhalv10015037m.g Eutrema salsugineum HOM05D004854 ORTHO05D005854 3.8e-18 95.1 70 68.6
Gohir.A05G003400 Gossypium hirsutum HOM05D004854 ORTHO05D005854 3.8e-18 95.1 69 66.7
Gohir.D05G003800 Gossypium hirsutum HOM05D004854 ORTHO05D005854 3.8e-18 95.1 69 66.7
Gorai.009G003400 Gossypium raimondii HOM05D004854 ORTHO05D005854 3.8e-18 95.1 69 66.7
SGA_v2.0_scaffold46G17340 Striga asiatica HOM05D004854 ORTHO05D005854 3.8e-18 95.1 71 73.2
arahy.Tifrunner.gnm1.ann1.XNR1AK Arachis hypogaea HOM05D004854 ORTHO05D005854 5.0e-18 94.7 69 69.6
Cc06_g22110 Coffea canephora HOM05D004854 ORTHO05D005854 5.0e-18 94.7 68 69.1
Zm00001eb226990 Zea mays HOM05D004854 ORTHO05D005854 6.5e-18 94.4 72 63.9
AT5G57290 Arabidopsis thaliana HOM05D004854 ORTHO05D005854 1.1e-17 93.6 65 72.3
PSO596G0067 Papaver somniferum HOM05D004854 ORTHO05D005854 1.4e-17 93.2 71 64.8
arahy.Tifrunner.gnm1.ann1.90PU0B Arachis hypogaea HOM05D004854 ORTHO05D005854 1.9e-17 92.8 71 64.8
arahy.Tifrunner.gnm1.ann1.AP25S4 Arachis hypogaea HOM05D004854 ORTHO05D005854 1.9e-17 92.8 69 68.1
SHI02877 Sapria himalayana HOM05D004681 ORTHO05D005541 1.9e-17 92.8 66 71.2
TAR636G3485 Trochodendron aralioides HOM05D004854 ORTHO05D005854 1.9e-17 92.8 60 76.7
Lj4g0022898 Lotus japonicus HOM05D004854 ORTHO05D005854 2.5e-17 92.4 70 68.6
Aa31LG3G13170 Aethionema arabicum HOM05D004854 ORTHO05D005854 3.2e-17 92.0 70 65.7
PSO423G0052 Papaver somniferum HOM05D004854 ORTHO05D005854 3.2e-17 92.0 71 64.8
Duzib150G0904 Durio zibethinus HOM05D004854 ORTHO05D005854 5.5e-17 91.3 68 66.2
FAN22G0664 Fragaria x ananassa HOM05D004854 ORTHO05D005854 1.2e-16 90.1 69 68.1
FvH4_4g07630 Fragaria vesca HOM05D004854 ORTHO05D005854 1.6e-16 89.7 67 70.1
FAN07G2001 Fragaria x ananassa HOM05D004854 ORTHO05D005854 1.6e-16 89.7 67 70.1
FAN12G2445 Fragaria x ananassa HOM05D004854 ORTHO05D005854 1.6e-16 89.7 67 70.1
FAN17G2475 Fragaria x ananassa HOM05D004854 ORTHO05D005854 1.6e-16 89.7 67 70.1
BcaB08g36089 Brassica carinata HOM05D004854 ORTHO05D005854 2.1e-16 89.4 71 63.4
Lalb_Chr07g0185421 Lupinus albus HOM05D004854 ORTHO05D005854 3.6e-16 88.6 69 66.7
Thecc.01G294400 Theobroma cacao HOM05D004854 ORTHO05D005854 3.6e-16 88.6 71 60.6
Thecc.09G180300 Theobroma cacao HOM05D004854 ORTHO05D005854 3.6e-16 88.6 69 63.8
Lalb_Chr13g0295841 Lupinus albus HOM05D004854 ORTHO05D005854 4.6e-16 88.2 70 65.7
RcHm_v2.0_Chr4g0400241 Rosa chinensis HOM05D004854 ORTHO05D005854 4.6e-16 88.2 67 70.1
Lj6g0003516 Lotus japonicus HOM05D004854 ORTHO05D005854 7.9e-16 87.4 70 61.4
TPR.G6298 Trifolium pratense HOM05D004854 ORTHO05D005854 3.0e-15 85.5 68 63.2
Zm00001eb272850 Zea mays HOM05D004854 ORTHO05D005854 3.0e-15 85.5 69 63.8
ATR0626G247 Amborella trichopoda HOM05D004854 ORTHO05D005854 5.1e-15 84.7 62 69.4
RcHm_v2.0_Chr1g0341131 Rosa chinensis HOM05D004854 ORTHO05D005854 5.1e-15 84.7 67 68.7
HPP92_026146 Vanilla planifolia HOM05D003573 ORTHO05D004204 1.3e-13 80.1 67 61.2
Nn2g12744 Nelumbo nucifera HOM05D004854 ORTHO05D005854 3.7e-13 78.6 46 78.3
Pp3c22_2920 Physcomitrium patens HOM05D004854 ORTHO05D005854 2.0e-11 72.8 72 56.9
C03p15060 Brassica napus HOM05D004854 ORTHO05D005854 3.4e-11 72.0 56 71.4
arahy.Tifrunner.gnm1.ann1.63P7R9 Arachis hypogaea HOM05D000970 ORTHO05D000788 1.0e-10 70.5 53 69.8
Pp3c21_16160 Physcomitrium patens HOM05D004854 ORTHO05D005854 2.2e-10 69.3 121 64.5
SMO172G0233 Selaginella moellendorffii HOM05D004854 ORTHO05D005854 8.5e-10 67.4 70 47.1
Mapoly0006s0174 Marchantia polymorpha HOM05D004854 ORTHO05D005854 1.1e-09 67.0 72 47.2
Duzib170G0267 Durio zibethinus HOM05D004854 ORTHO05D005854 7.2e-09 64.3 42 66.7
BolC3t13948H Brassica oleracea HOM05D004854 ORTHO05D005854 1.6e-08 63.2 54 64.8
Duzib168G1583 Durio zibethinus HOM05D004854 ORTHO05D005854 7.9e-08 60.8 46 58.7
COL.COLO4_25466 Corchorus olitorius HOM05D004854 ORTHO05D005854 1.4e-07 60.1 42 61.9


User provided reference genes

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