Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.19302 Avicennia marina HOM05D004363 ORTHO05D005110 0.0e+00 2563.9 1290 100.0
Migut.J00693 Erythranthe guttata HOM05D004363 ORTHO05D005110 0.0e+00 2034.6 1295 79.6
MSTRG.5891 Avicennia marina HOM05D004363 ORTHO05D005110 0.0e+00 1979.5 1292 77.3
Oeu035643.1 Olea europaea HOM05D004363 ORTHO05D005110 0.0e+00 1815.8 1290 70.2
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 0.0e+00 1757.3 1293 69.7
Dinv31774 Davidia involucrata HOM05D004363 ORTHO05D005110 0.0e+00 1723.8 1290 66.8
CSS0038425 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 0.0e+00 1674.8 1259 66.7
Solyc01g006960.3 Solanum lycopersicum HOM05D004363 ORTHO05D005110 0.0e+00 1612.8 1288 64.1
Sopen01g002950 Solanum pennellii HOM05D004363 ORTHO05D005110 0.0e+00 1612.0 1288 64.5
Ciclev10010925m.g Citrus clementina HOM05D004363 ORTHO05D005110 0.0e+00 1607.0 1294 63.0
vmacro07483 Vaccinium macrocarpon HOM05D004363 ORTHO05D005110 0.0e+00 1601.6 1291 63.1
Atru.chr8.1332 Acer truncatum HOM05D004363 ORTHO05D005110 0.0e+00 1591.6 1303 61.7
TAR628G0010 Trochodendron aralioides HOM05D004363 ORTHO05D005110 0.0e+00 1587.8 1311 61.9
Prupe.7G093600 Prunus persica HOM05D004363 ORTHO05D005110 0.0e+00 1581.2 1300 62.8
CiPaw.10G018600 Carya illinoinensis HOM05D004363 ORTHO05D005110 0.0e+00 1575.1 1290 62.7
GSVIVG01022591001 Vitis vinifera HOM05D004363 ORTHO05D005110 0.0e+00 1573.1 1271 62.9
TAR169G0003 Trochodendron aralioides HOM05D004363 ORTHO05D005110 0.0e+00 1570.1 1311 61.7
CAN.G911.40 Capsicum annuum HOM05D004363 ORTHO05D005110 0.0e+00 1565.4 1288 62.0
MD12G1041600 Malus domestica HOM05D004363 ORTHO05D005110 0.0e+00 1564.7 1296 61.6
Duzib093G0100 Durio zibethinus HOM05D004363 ORTHO05D005110 0.0e+00 1556.6 1299 61.6
MD14G1040700 Malus domestica HOM05D004363 ORTHO05D005110 0.0e+00 1555.8 1308 61.2
CANSAT64G2344 Cannabis sativa HOM05D004363 ORTHO05D005110 0.0e+00 1549.6 1291 61.1
COL.COLO4_29546 Corchorus olitorius HOM05D004363 ORTHO05D005110 0.0e+00 1546.2 1298 59.9
Duzib128G0297 Durio zibethinus HOM05D004363 ORTHO05D005110 0.0e+00 1538.5 1322 59.8
ECA233G0072 Erigeron canadensis HOM05D004363 ORTHO05D005110 0.0e+00 1526.1 1296 60.5
Potri.016G068800 Populus trichocarpa HOM05D004363 ORTHO05D005110 0.0e+00 1523.8 1294 61.2
TWI74G0412 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 0.0e+00 1518.8 1294 60.5
CsaV3_3G038050 Cucumis sativus L. HOM05D004363 ORTHO05D005110 0.0e+00 1515.7 1290 60.0
Nn6g34649 Nelumbo nucifera HOM05D004363 ORTHO05D005110 0.0e+00 1513.4 1317 59.9
FvH4_6g20450 Fragaria vesca HOM05D004363 ORTHO05D005110 0.0e+00 1511.5 1298 60.3
Gohir.A11G315700 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1507.7 1293 60.1
Glyma.19G200400 Glycine max HOM05D004363 ORTHO05D005110 0.0e+00 1505.0 1299 58.9
TWI77G0878 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 0.0e+00 1504.2 1329 59.0
Glyma.03G202700 Glycine max HOM05D004363 ORTHO05D005110 0.0e+00 1503.0 1299 58.8
TPR.G31289 Trifolium pratense HOM05D004363 ORTHO05D005110 0.0e+00 1501.9 1297 59.1
Gohir.D11G332900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1501.1 1293 59.9
Aqoxy1G00638 Aquilegia oxysepala HOM05D004363 ORTHO05D005110 0.0e+00 1500.7 1305 59.5
Ca_09062_v3 Cicer arietinum L. HOM05D004363 ORTHO05D005110 0.0e+00 1499.6 1296 58.7
Gorai.007G363900 Gossypium raimondii HOM05D004363 ORTHO05D005110 0.0e+00 1498.4 1294 59.9
Manes.08G034300 Manihot esculenta HOM05D004363 ORTHO05D005110 0.0e+00 1498.0 1242 62.4
Medtr7g106380 Medicago truncatula HOM05D004363 ORTHO05D005110 0.0e+00 1497.3 1296 59.0
ClCG10G018260 Citrullus lanatus HOM05D004363 ORTHO05D005110 0.0e+00 1496.9 1353 58.0
DCAR_020694 Daucus carota HOM05D004363 ORTHO05D005110 0.0e+00 1494.6 1361 58.0
Sed0002127 Sechium edule HOM05D004363 ORTHO05D005110 0.0e+00 1493.0 1291 58.8
Cfa020046 Carpinus fangiana HOM05D004363 ORTHO05D005110 0.0e+00 1491.5 1292 60.3
Lj1g0000064 Lotus japonicus HOM05D004363 ORTHO05D005110 0.0e+00 1489.9 1296 58.8
HanXRQChr02g0053261 Helianthus annuus HOM05D004363 ORTHO05D005110 0.0e+00 1487.6 1293 59.4
Psat0s3922g0040 Pisum sativum HOM05D004363 ORTHO05D005110 0.0e+00 1486.5 1296 58.2
Sabra16G0069700 Salix brachista HOM05D004363 ORTHO05D005110 0.0e+00 1485.7 1309 60.0
Eucgr.A02575 Eucalyptus grandis HOM05D004363 ORTHO05D005110 0.0e+00 1482.2 1293 57.9
Sc01g0005470 Simmondsia chinensis HOM05D004363 ORTHO05D005110 0.0e+00 1481.5 1293 60.0
arahy.Tifrunner.gnm1.ann1.KT4HPP Arachis hypogaea HOM05D004363 ORTHO05D005110 0.0e+00 1479.5 1299 58.6
arahy.Tifrunner.gnm1.ann1.D60SL5 Arachis hypogaea HOM05D004363 ORTHO05D005110 0.0e+00 1478.4 1310 58.3
THA.LOC104820934 Tarenaya hassleriana HOM05D004363 ORTHO05D005110 0.0e+00 1474.5 1303 56.6
VMungo1383G2497 Vigna mungo HOM05D004363 ORTHO05D005110 0.0e+00 1472.6 1297 58.1
FAN09G2042 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1471.1 1387 56.0
Phvul.001G196200 Phaseolus vulgaris HOM05D004363 ORTHO05D005110 0.0e+00 1462.2 1297 57.9
Lalb_Chr01g0017831 Lupinus albus HOM05D004363 ORTHO05D005110 0.0e+00 1453.7 1292 57.5
PGR004G0690 Punica granatum HOM05D004363 ORTHO05D005110 0.0e+00 1453.7 1288 58.2
FAN14G2782 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1448.7 1420 55.1
Lsat_1_v5_gn_6_33820 Lactuca sativa HOM05D004363 ORTHO05D005110 0.0e+00 1447.6 1294 58.8
EL10Ac5g11738 Beta vulgaris HOM05D004363 ORTHO05D005110 0.0e+00 1444.9 1313 57.4
Dinv12347 Davidia involucrata HOM05D004363 ORTHO05D005110 0.0e+00 1437.6 1075 66.5
Sp6g27880 Schrenkiella parvula HOM05D004363 ORTHO05D005110 0.0e+00 1428.7 1298 56.9
PSO384G4461 Papaver somniferum HOM05D004363 ORTHO05D005110 0.0e+00 1424.8 1305 56.9
PSO339G1158 Papaver somniferum HOM05D004363 ORTHO05D005110 0.0e+00 1423.3 1304 56.9
Cc06_g06670 Coffea canephora HOM05D004363 ORTHO05D005110 0.0e+00 1422.1 1110 64.7
AL6G27170 Arabidopsis lyrata HOM05D004363 ORTHO05D005110 0.0e+00 1420.6 1300 56.4
C03p08890 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1418.3 1298 56.2
Rhsim11G0045000 Rhododendron simsii HOM05D004363 ORTHO05D005110 0.0e+00 1418.3 1155 62.4
BolC3t13384H Brassica oleracea HOM05D004363 ORTHO05D005110 0.0e+00 1417.1 1299 56.3
Thecc.05G106200 Theobroma cacao HOM05D004363 ORTHO05D005110 0.0e+00 1415.6 1188 60.8
BraA03t10093Z Brassica rapa HOM05D004363 ORTHO05D005110 0.0e+00 1414.8 1300 56.5
AT5G16280 Arabidopsis thaliana HOM05D004363 ORTHO05D005110 0.0e+00 1412.5 1300 55.2
A03p07650 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1411.4 1300 56.3
Gorai.009G393900 Gossypium raimondii HOM05D004363 ORTHO05D005110 0.0e+00 1409.0 1304 56.1
BolC9t58910H Brassica oleracea HOM05D004363 ORTHO05D005110 0.0e+00 1406.0 1306 55.7
Carub.0006s1447 Capsella rubella HOM05D004363 ORTHO05D005110 0.0e+00 1405.6 1302 56.2
Peaxi162Scf00582g00064 Petunia axillaris HOM05D004363 ORTHO05D005110 0.0e+00 1398.6 1206 60.7
A10p22780 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1398.3 1302 55.8
BraA10t44344Z Brassica rapa HOM05D004363 ORTHO05D005110 0.0e+00 1397.5 1302 55.8
Thhalv10012466m.g Eutrema salsugineum HOM05D004363 ORTHO05D005110 0.0e+00 1395.2 1306 56.0
Aa31LG11G13340 Aethionema arabicum HOM05D004363 ORTHO05D005110 0.0e+00 1391.7 1312 54.6
QL07p036386 Quercus lobata HOM05D004363 ORTHO05D005110 0.0e+00 1382.5 1109 63.8
AUR62041186 Chenopodium quinoa HOM05D004363 ORTHO05D005110 0.0e+00 1376.3 1291 54.3
BcaB01g04994 Brassica carinata HOM05D004363 ORTHO05D005110 0.0e+00 1354.0 1294 55.2
RcHm_v2.0_Chr3g0476301 Rosa chinensis HOM05D004363 ORTHO05D005110 0.0e+00 1349.0 1112 62.2
MELO3C009547.2 Cucumis melo HOM05D004363 ORTHO05D005110 0.0e+00 1332.0 1403 52.0
Lalb_Chr25g0287961 Lupinus albus HOM05D004363 ORTHO05D005110 0.0e+00 1325.8 1296 53.6
AUR62030686 Chenopodium quinoa HOM05D004363 ORTHO05D005110 0.0e+00 1320.1 1290 52.9
Hund10860 Selenicereus undatus HOM05D004363 ORTHO05D005110 0.0e+00 1319.7 1301 54.7
FAN02G1528 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1313.5 1113 61.0
BcaNung06113 Brassica carinata HOM05D004363 ORTHO05D005110 0.0e+00 1297.7 1304 52.8
HPP92_013952 Vanilla planifolia HOM05D004363 ORTHO05D005110 0.0e+00 1297.3 1266 53.8
Os03g0786900 Oryza sativa ssp. japonica HOM05D004363 ORTHO05D005110 0.0e+00 1288.5 1276 52.2
Zm00001eb060010 Zea mays HOM05D004363 ORTHO05D005110 0.0e+00 1286.9 1294 51.1
ATR0772G191 Amborella trichopoda HOM05D004363 ORTHO05D005110 0.0e+00 1259.2 1328 51.6
FAN05G1872 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1236.1 1121 59.2
FAN05G3395 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1222.2 1160 57.2
Gohir.D04G092000 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1209.1 1080 57.0
CDE11G0453 Ceratophyllum demersum HOM05D004363 ORTHO05D005110 0.0e+00 1183.3 1300 49.3
SEGI_03324 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 0.0e+00 1118.6 1385 46.1
Nitab4.5_0001177g0040 Nicotiana tabacum HOM05D004363 ORTHO05D005110 1.8e-302 1043.1 921 58.3
Ah.07g203620 Amaranthus hybridus HOM05D004363 ORTHO05D005110 8.0e-271 937.9 847 58.7
CARHR197030 Cardamine hirsuta HOM05D004363 ORTHO05D005110 3.1e-267 926.0 648 69.4
Pp3c6_8810 Physcomitrium patens HOM05D004363 ORTHO05D005110 3.0e-262 909.4 1344 39.7
unitig_578.g15812 Utricularia gibba HOM05D004363 ORTHO05D005110 8.0e-255 884.8 1292 42.1
Mapoly0053s0062 Marchantia polymorpha HOM05D004363 ORTHO05D005110 5.9e-250 868.6 1367 39.6
AagrBONN_evm.TU.Sc2ySwM_228.1566 Anthoceros agrestis HOM05D004363 ORTHO05D005110 5.6e-240 835.5 1183 41.2
Gohir.A04G054800 Gossypium hirsutum HOM05D004363 ORTHO05D005110 3.3e-232 809.7 751 57.0
SMO196G0050 Selaginella moellendorffii HOM05D004363 ORTHO05D005110 4.5e-189 666.4 943 41.3
Nitab4.5_0001191g0010 Nicotiana tabacum HOM05D004363 ORTHO05D005110 6.1e-178 629.4 653 50.8
TAR623G0254 Trochodendron aralioides HOM05D004363 ORTHO05D005110 8.2e-167 592.4 570 53.3
Lj1A1055T62 Lonicera japonica HOM05D004363 ORTHO05D005110 1.8e-150 538.1 349 77.1
Cpa.g.sc104.18 Carica papaya HOM05D004363 ORTHO05D005110 1.3e-148 531.9 379 71.0
Haze_20158 Corylus avellana HOM05D004363 ORTHO05D005110 3.9e-132 477.2 504 54.4
Cpa.g.sc104.16 Carica papaya HOM05D004363 ORTHO05D005110 1.3e-119 435.6 323 64.4
Cpa.g.sc104.13 Carica papaya HOM05D004363 ORTHO05D005110 3.5e-117 427.6 461 49.0
Haze_20157 Corylus avellana HOM05D004363 ORTHO05D005110 1.2e-101 375.9 222 77.0
Actinidia03984 Actinidia chinensis HOM05D004363 ORTHO05D005110 3.2e-94 351.3 477 43.4
Cre01.g024400 Chlamydomonas reinhardtii HOM05D004363 ORTHO05D005110 3.3e-91 341.3 1079 24.9
Actinidia03876 Actinidia chinensis HOM05D004363 ORTHO05D005110 4.8e-90 337.4 409 46.0
Lj1C1055T8 Lonicera japonica HOM05D004363 ORTHO05D005110 2.6e-80 305.1 214 68.2
Gohir.A04G054750 Gossypium hirsutum HOM05D004363 ORTHO05D005110 1.7e-79 302.4 214 66.8
Gohir.D04G091900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 1.9e-78 298.9 205 67.3
PRCOL_00001893 Prasinoderma coloniale HOM05D004363 ORTHO05D005110 2.1e-77 295.4 1045 25.8
Hma1.2p1_0064F.1_g034600 Hydrangea macrophylla HOM05D004363 ORTHO05D005110 6.0e-77 293.9 288 51.0
CSS0042424 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 1.1e-73 283.1 162 80.9
CSS0011588 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 1.4e-65 256.1 145 80.0
SEGI_33831 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 3.9e-60 238.0 189 57.7
CBR_g74641 Chara braunii HOM05D004363 ORTHO05D005110 3.2e-54 218.4 719 26.6
MCO09G191 Micromonas commoda HOM05D004363 ORTHO05D005110 2.3e-52 212.2 1167 22.8
Ah.07g203610 Amaranthus hybridus HOM05D004363 ORTHO05D005110 7.2e-46 190.7 213 46.0
Nn3g20229 Nelumbo nucifera HOM05D004363 ORTHO05D005110 1.2e-43 183.3 167 58.1
Actinidia03879 Actinidia chinensis HOM05D004363 ORTHO05D005110 5.2e-36 157.9 142 58.5
C09p60760 Brassica napus HOM05D004363 ORTHO05D005110 5.7e-35 154.5 123 60.2
Actinidia03986 Actinidia chinensis HOM05D004363 ORTHO05D005110 4.8e-34 151.4 114 62.3
Rhsim11G0045100 Rhododendron simsii HOM05D004363 ORTHO05D005110 8.3e-34 150.6 146 51.4
SEGI_10491 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 4.1e-33 148.3 119 55.5
RcHm_v2.0_Chr3g0476311 Rosa chinensis HOM05D004363 ORTHO05D005110 1.3e-31 143.3 150 48.7
SEGI_28545 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 1.5e-30 139.8 110 76.4
CSS0037163 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 1.9e-30 139.4 92 72.8
SEGI_22432 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 4.7e-29 134.8 210 38.1
SHI08961 Sapria himalayana HOM05D004363 ORTHO05D005110 6.1e-29 134.4 382 29.6
SHI08960 Sapria himalayana HOM05D004363 ORTHO05D005110 1.7e-26 126.3 178 39.3
SHI08956 Sapria himalayana HOM05D004363 ORTHO05D005110 2.8e-26 125.6 113 70.8
Actinidia03877 Actinidia chinensis HOM05D004363 ORTHO05D005110 1.5e-22 113.2 88 62.5
Ah.07g203630 Amaranthus hybridus HOM05D004363 ORTHO05D005110 2.1e-21 109.4 208 33.2
SEGI_19509 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 2.6e-19 102.4 78 62.8
arahy.Tifrunner.gnm1.ann1.BA6WS2 Arachis hypogaea HOM05D004363 ORTHO05D005110 2.9e-18 99.0 62 66.1
SHI08951 Sapria himalayana HOM05D004363 ORTHO05D005110 1.4e-17 96.7 83 59.0
ATR0820G261 Amborella trichopoda HOM05D004363 ORTHO05D005110 4.1e-17 95.1 202 33.7
SHI08962 Sapria himalayana HOM05D004363 ORTHO05D005110 1.9e-14 86.3 234 31.6
arahy.Tifrunner.gnm1.ann1.P34FZA Arachis hypogaea HOM05D004363 ORTHO05D005110 3.3e-14 85.5 57 63.2
SHI08954 Sapria himalayana HOM05D004363 ORTHO05D005110 4.3e-14 85.1 62 58.1
Lsat_1_v5_gn_8_3860 Lactuca sativa HOM05D004363 ORTHO05D005110 7.3e-14 84.3 87 50.6
Lsat_1_v5_gn_8_81001 Lactuca sativa HOM05D004363 ORTHO05D005110 1.7e-10 73.2 86 48.8
arahy.Tifrunner.gnm1.ann1.5GE6FN Arachis hypogaea HOM05D000323 ORTHO05D000201 2.7e-08 65.9 41 65.9
Lsat_1_v5_gn_3_22681 Lactuca sativa HOM05D004363 ORTHO05D005110 3.5e-08 65.5 45 68.9
CAN.G526.3 Capsicum annuum HOM05D004363 ORTHO05D005110 1.3e-07 63.5 76 67.1
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 6.6e-07 61.2 73 61.6


User provided reference genes

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