Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.1884 Avicennia marina HOM05D003520 ORTHO05D003332 0.0e+00 1245.7 723 100.0
SalBow1G4878 Salvia bowleyana HOM05D003520 ORTHO05D003332 2.9e-137 493.4 784 43.8
SGA_v2.0_scaffold144G35962 Striga asiatica HOM05D003520 ORTHO05D003332 2.0e-101 374.4 668 43.6
Migut.E01117 Erythranthe guttata HOM05D003520 ORTHO05D003332 1.2e-90 338.6 659 44.3
SGA_v2.0_scaffold385G50464 Striga asiatica HOM05D003520 ORTHO05D003332 1.1e-86 325.5 673 37.0
Dinv38981 Davidia involucrata HOM05D003520 ORTHO05D003332 6.0e-74 283.1 701 38.4
Dinv37667 Davidia involucrata HOM05D003520 ORTHO05D003332 1.3e-73 282.0 750 31.6
Cc08_g14270 Coffea canephora HOM05D003520 ORTHO05D003332 6.2e-71 273.1 867 33.3
Oeu049557.4 Olea europaea HOM05D003520 ORTHO05D003332 3.1e-62 244.2 967 27.1
Actinidia05219 Actinidia chinensis HOM05D003520 ORTHO05D003332 2.4e-59 234.6 787 32.4
Cfa012135 Carpinus fangiana HOM05D003520 ORTHO05D003332 4.6e-50 203.8 644 30.3
QL12p017888 Quercus lobata HOM05D003520 ORTHO05D003332 4.3e-48 197.2 675 27.6
Prupe.5G094800 Prunus persica HOM05D003520 ORTHO05D003332 2.9e-44 184.5 622 29.1
TAR629G1002 Trochodendron aralioides HOM05D003520 ORTHO05D003332 1.1e-43 182.6 622 28.8
CsaV3_5G003080 Cucumis sativus L. HOM05D003520 ORTHO05D003332 2.4e-43 181.4 648 28.1
Thecc.03G274800 Theobroma cacao HOM05D003520 ORTHO05D003332 6.0e-42 176.8 603 29.2
TAR375G0279 Trochodendron aralioides HOM05D003520 ORTHO05D003332 2.3e-41 174.9 530 30.6
Hma1.2p1_0514F.1_g169820 Hydrangea macrophylla HOM05D003520 ORTHO05D003332 3.9e-41 174.1 281 37.7
ClCG01G002970 Citrullus lanatus HOM05D003520 ORTHO05D003332 8.7e-41 172.9 640 27.7
Duzib084G0866 Durio zibethinus HOM05D003520 ORTHO05D003332 8.7e-41 172.9 615 27.8
CiPaw.11G138700 Carya illinoinensis HOM05D003520 ORTHO05D003332 2.4e-38 164.9 631 26.6
TWI81G1024 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 3.4e-37 161.0 461 31.7
Sopen08g029000 Solanum pennellii HOM05D003520 ORTHO05D003332 5.8e-37 160.2 576 28.1
Actinidia02028 Actinidia chinensis HOM05D003520 ORTHO05D003332 8.4e-36 156.4 681 27.5
Ciclev10018609m.g Citrus clementina HOM05D003520 ORTHO05D003332 1.4e-35 155.6 680 26.6
Solyc08g080690.4 Solanum lycopersicum HOM05D003520 ORTHO05D003332 1.9e-35 155.2 590 28.6
MD14G1098200 Malus domestica HOM05D003520 ORTHO05D003332 9.3e-35 152.9 630 27.8
Rhsim07G0092500 Rhododendron simsii HOM05D003520 ORTHO05D003332 3.5e-34 151.0 580 29.8
Actinidia14538 Actinidia chinensis HOM05D003520 ORTHO05D003332 4.6e-34 150.6 703 26.6
Atru.chr9.1567 Acer truncatum HOM05D003520 ORTHO05D000037 2.3e-33 148.3 605 27.3
GSVIVG01019812001 Vitis vinifera HOM05D000016 ORTHO05D000109 3.0e-33 147.9 568 28.0
Lj2C195G2 Lonicera japonica HOM05D003520 ORTHO05D003332 1.5e-32 145.6 762 26.2
vmacro13942 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 2.5e-32 144.8 321 33.0
Gohir.A11G021700 Gossypium hirsutum HOM05D003520 ORTHO05D003332 1.6e-31 142.1 541 27.7
arahy.Tifrunner.gnm1.ann1.49TA12 Arachis hypogaea HOM05D003520 ORTHO05D003332 2.2e-31 141.7 633 32.5
FAN18G3894 Fragaria x ananassa HOM05D003520 ORTHO05D003332 2.2e-31 141.7 572 26.6
FAN13G1265 Fragaria x ananassa HOM05D003520 ORTHO05D003332 4.8e-31 140.6 570 27.0
Gorai.007G022700 Gossypium raimondii HOM05D003520 ORTHO05D003332 1.1e-30 139.4 613 27.4
FvH4_5g01860 Fragaria vesca HOM05D003520 ORTHO05D003332 1.8e-30 138.7 572 26.4
arahy.Tifrunner.gnm1.ann1.AR6NCQ Arachis hypogaea HOM05D003520 ORTHO05D003332 4.1e-30 137.5 636 31.6
FAN04G1936 Fragaria x ananassa HOM05D003520 ORTHO05D003332 5.3e-30 137.1 571 27.0
vmacro13941 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 6.9e-30 136.7 535 29.7
Hund11497 Selenicereus undatus HOM05D003520 ORTHO05D003332 9.0e-30 136.3 472 27.5
GSVIVG01010547001 Vitis vinifera HOM05D003520 ORTHO05D003332 1.2e-29 136.0 533 28.1
Haze_08912 Corylus avellana HOM05D003520 ORTHO05D003332 1.5e-29 135.6 701 25.8
Gohir.D11G021400 Gossypium hirsutum HOM05D003520 ORTHO05D003332 1.5e-29 135.6 542 27.3
MD06G1076800 Malus domestica HOM05D003520 ORTHO05D003332 2.0e-29 135.2 500 28.2
TPR.G12816 Trifolium pratense HOM05D003520 ORTHO05D003332 2.0e-29 135.2 545 30.6
FAN08G2904 Fragaria x ananassa HOM05D003520 ORTHO05D003332 3.4e-29 134.4 641 26.4
AUR62010600 Chenopodium quinoa HOM05D003520 ORTHO05D003332 4.5e-29 134.0 498 27.3
Manes.02G024900 Manihot esculenta HOM05D003520 ORTHO05D003332 4.5e-29 134.0 487 27.5
Glyma.08G012000 Glycine max HOM05D003520 ORTHO05D003332 7.7e-29 133.3 647 29.8
Glyma.05G205100 Glycine max HOM05D003520 ORTHO05D003332 1.7e-28 132.1 627 30.1
CAN.G859.7 Capsicum annuum HOM05D003520 ORTHO05D003332 3.8e-28 131.0 614 31.6
RcHm_v2.0_Chr7g0198661 Rosa chinensis HOM05D003520 ORTHO05D003332 1.9e-27 128.6 640 24.2
Ah.12g057370 Amaranthus hybridus HOM05D003520 ORTHO05D003332 4.2e-27 127.5 505 25.9
CSS0014139 Camellia sinensis var. sinensis HOM05D003520 ORTHO05D003332 9.4e-27 126.3 406 31.8
COL.COLO4_34422 Corchorus olitorius HOM05D003520 ORTHO05D003332 1.2e-26 125.9 462 27.9
Nitab4.5_0003604g0010 Nicotiana tabacum HOM05D003520 ORTHO05D003332 2.7e-26 124.8 569 32.9
DCAR_008413 Daucus carota HOM05D003520 ORTHO05D003332 4.6e-26 124.0 457 26.9
Peaxi162Scf00714g00124 Petunia axillaris HOM05D003520 ORTHO05D003332 4.6e-26 124.0 275 37.1
Medtr8g096930 Medicago truncatula HOM05D003520 ORTHO05D003332 6.1e-26 123.6 609 29.7
Oeu048797.1 Olea europaea HOM05D003520 ORTHO05D003332 1.8e-25 122.1 553 27.3
Lalb_Chr16g0389811 Lupinus albus HOM05D003520 ORTHO05D003332 3.0e-25 121.3 335 39.1
Phvul.002G155600 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 4.3e-24 117.5 593 23.9
Psat7g035760 Pisum sativum HOM05D003520 ORTHO05D003332 4.3e-24 117.5 531 33.0
Sed0002800 Sechium edule HOM05D003520 ORTHO05D003332 4.3e-24 117.5 732 23.5
EL10Ac5g12763 Beta vulgaris HOM05D003520 ORTHO05D003332 7.4e-24 116.7 360 27.2
Lsat_1_v5_gn_6_101581 Lactuca sativa HOM05D003520 ORTHO05D003332 7.4e-24 116.7 292 30.5
Nn1g01417 Nelumbo nucifera HOM05D003520 ORTHO05D003332 1.3e-23 115.9 568 28.5
Phvul.002G287000 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 1.7e-23 115.5 634 29.5
Lsat_1_v5_gn_6_86801 Lactuca sativa HOM05D003520 ORTHO05D003332 2.8e-23 114.8 201 36.3
Sc22g0000330 Simmondsia chinensis HOM05D003520 ORTHO05D003332 2.8e-23 114.8 666 24.8
ECA240G0038 Erigeron canadensis HOM05D003520 ORTHO05D003332 8.2e-23 113.2 269 33.8
Aqoxy7G00385 Aquilegia oxysepala HOM05D003520 ORTHO05D003332 1.1e-22 112.8 561 24.4
Cfa008307 Carpinus fangiana HOM05D003520 ORTHO05D003332 3.1e-22 111.3 529 25.3
HanXRQChr03g0084491 Helianthus annuus HOM05D003520 ORTHO05D003332 4.1e-22 110.9 405 27.2
VMungo0251G2110 Vigna mungo HOM05D003520 ORTHO05D003332 5.3e-22 110.5 551 30.7
Ca_17554_v3 Cicer arietinum L. HOM05D003520 ORTHO05D003332 6.9e-22 110.2 575 25.7
arahy.Tifrunner.gnm1.ann1.RT2UP8 Arachis hypogaea HOM05D003520 ORTHO05D003332 9.1e-22 109.8 533 26.1
Oeu048798.1 Olea europaea HOM05D003520 ORTHO05D003332 9.1e-22 109.8 115 50.4
AUR62017242 Chenopodium quinoa HOM05D003520 ORTHO05D003332 2.0e-21 108.6 499 26.5
VMungo1215G1122 Vigna mungo HOM05D003520 ORTHO05D003332 3.4e-21 107.8 590 23.6
CiPaw.12G096100 Carya illinoinensis HOM05D003520 ORTHO05D003332 7.7e-21 106.7 692 23.7
Nitab4.5_0003154g0060 Nicotiana tabacum HOM05D003520 ORTHO05D003332 1.0e-20 106.3 590 31.9
CSS0024294 Camellia sinensis var. sinensis HOM05D003520 ORTHO05D003332 1.3e-20 105.9 178 36.5
Rhsim07G0193900 Rhododendron simsii HOM05D003520 ORTHO05D003332 1.3e-20 105.9 378 28.6
Haze_08915 Corylus avellana HOM05D003520 ORTHO05D003332 3.8e-20 104.4 222 35.6
Lj4g0003069 Lotus japonicus HOM05D003520 ORTHO05D003332 8.5e-20 103.2 703 27.3
Nn6g33544 Nelumbo nucifera HOM05D003520 ORTHO05D003332 5.5e-19 100.5 230 30.0
Duzib084G0697 Durio zibethinus HOM05D006981 ORTHO05D008719 6.1e-18 97.1 293 27.0
HanXRQChr13g0416181 Helianthus annuus HOM05D003520 ORTHO05D003332 6.1e-18 97.1 331 29.3
Lsat_1_v5_gn_6_86841 Lactuca sativa HOM05D003520 ORTHO05D003332 1.0e-17 96.3 210 31.4
Cc02_g03140 Coffea canephora HOM05D003520 ORTHO05D003332 2.3e-17 95.1 518 23.7
Sabra15G0150800 Salix brachista HOM05D003520 ORTHO05D003332 3.0e-17 94.7 208 31.2
Haze_13728 Corylus avellana HOM05D003520 ORTHO05D003332 1.1e-16 92.8 401 26.4
ATR0680G240 Amborella trichopoda HOM05D003520 ORTHO05D003332 2.0e-16 92.0 307 26.1
PSO478G3392 Papaver somniferum HOM05D003520 ORTHO05D003332 2.0e-16 92.0 250 29.2
PSO782G5503 Papaver somniferum HOM05D003520 ORTHO05D003332 2.6e-16 91.7 253 28.5
Ciclev10004647m.g Citrus clementina HOM05D003520 ORTHO05D003332 3.3e-16 91.3 402 26.9
PGSC0003DMG400003059 Solanum tuberosum HOM05D003520 ORTHO05D003332 5.7e-16 90.5 264 33.3
CiPaw.04G065200 Carya illinoinensis HOM05D003520 ORTHO05D003332 7.4e-16 90.1 216 31.0
Thecc.03G174900 Theobroma cacao HOM05D003520 ORTHO05D003332 9.7e-16 89.7 405 26.4
PGR142G4230 Punica granatum HOM05D003520 ORTHO05D003332 2.2e-15 88.6 92 48.9
HanXRQChr15g0495611 Helianthus annuus HOM05D003520 ORTHO05D003332 3.7e-15 87.8 231 31.2
Gohir.A12G258600 Gossypium hirsutum HOM05D003520 ORTHO05D003332 1.8e-14 85.5 521 25.0
PGSC0003DMG400014327 Solanum tuberosum HOM05D012625 ORTHO05D003332 2.4e-14 85.1 567 23.1
TWI14G1277 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 4.1e-14 84.3 550 23.8
Dinv28454 Davidia involucrata HOM05D003520 ORTHO05D003332 7.0e-14 83.6 367 27.5
Eucgr.K00243 Eucalyptus grandis HOM05D003520 ORTHO05D003332 7.0e-14 83.6 456 25.9
Gorai.008G278300 Gossypium raimondii HOM05D003520 ORTHO05D003332 7.0e-14 83.6 515 23.1
Lalb_Chr09g0321101 Lupinus albus HOM05D003520 ORTHO05D003332 7.0e-14 83.6 581 23.9
HanXRQChr09g0253501 Helianthus annuus HOM05D003520 ORTHO05D003332 9.1e-14 83.2 80 46.2
Solyc03g025970.3 Solanum lycopersicum HOM05D012625 ORTHO05D003332 9.1e-14 83.2 571 23.3
CAN.G1704.2 Capsicum annuum HOM05D012625 ORTHO05D003332 1.5e-13 82.4 543 23.9
Potri.015G140100 Populus trichocarpa HOM05D003520 ORTHO05D003332 2.0e-13 82.0 203 28.1
Manes.14G027100 Manihot esculenta HOM05D003520 ORTHO05D003332 2.6e-13 81.6 257 28.4
Duzib205G1307 Durio zibethinus HOM05D003520 ORTHO05D003332 3.5e-13 81.3 148 33.8
QL09p014562 Quercus lobata HOM05D003520 ORTHO05D003332 4.5e-13 80.9 555 27.9
Duzib205G1602 Durio zibethinus HOM05D003520 ORTHO05D003332 7.7e-13 80.1 370 24.9
Rhsim07G0193800 Rhododendron simsii HOM05D003520 ORTHO05D003332 1.0e-12 79.7 407 26.8
Migut.F00353 Erythranthe guttata HOM05D003520 ORTHO05D003332 1.3e-12 79.3 65 53.8
SalBow4G1422 Salvia bowleyana HOM05D006981 ORTHO05D008719 2.9e-12 78.2 546 23.1
SalBow4G2131 Salvia bowleyana HOM05D006981 ORTHO05D008719 2.9e-12 78.2 546 23.1
GSVIVG01019811001 Vitis vinifera HOM05D000016 ORTHO05D000109 2.9e-12 78.2 385 26.2
THA.LOC104809412 Tarenaya hassleriana HOM05D012020 ORTHO05D013949 8.5e-12 76.6 176 32.4
MD01G1199300 Malus domestica HOM05D003520 ORTHO05D003332 1.1e-11 76.3 406 27.3
COL.COLO4_14291 Corchorus olitorius HOM05D003520 ORTHO05D003332 2.5e-11 75.1 427 24.6
Sopen03g004790 Solanum pennellii HOM05D012625 ORTHO05D003332 5.5e-11 73.9 590 22.2
Glyma.11G025500 Glycine max HOM05D003520 ORTHO05D003332 7.2e-11 73.6 219 28.8
MBI18_g01149_MAGBIO Magnolia biondii HOM05D003520 ORTHO05D003332 1.2e-10 72.8 150 33.3
Nitab4.5_0000716g0220 Nicotiana tabacum HOM05D012625 ORTHO05D003332 1.2e-10 72.8 378 24.6
Os04g0266400 Oryza sativa ssp. japonica HOM05D003520 ORTHO05D003332 1.2e-10 72.8 282 24.8
VMungo0464G1159 Vigna mungo HOM05D003520 ORTHO05D003332 1.2e-10 72.8 420 23.8
Lj2g0020727 Lotus japonicus HOM05D003520 ORTHO05D003332 1.6e-10 72.4 321 26.5
MD07G1267200 Malus domestica HOM05D003520 ORTHO05D003332 2.1e-10 72.0 702 22.8
TAR636G1398 Trochodendron aralioides HOM05D003520 ORTHO05D003332 2.1e-10 72.0 112 38.4
CsaV3_3G017000 Cucumis sativus L. HOM05D003520 ORTHO05D003332 8.0e-10 70.1 547 23.4
Atru.chr1.477_Atru.chr1.478 Acer truncatum HOM05D003520 ORTHO05D003332 1.4e-09 69.3 389 25.2
MSTRG.8747 Avicennia marina HOM05D003520 ORTHO05D003332 1.4e-09 69.3 649 23.1
CARHR265160 Cardamine hirsuta HOM05D012366 ORTHO05D003332 3.0e-09 68.2 65 47.7
Oeu056239.2 Olea europaea HOM05D003520 ORTHO05D003332 3.0e-09 68.2 457 22.8
Sed0005114 Sechium edule HOM05D003520 ORTHO05D003332 3.0e-09 68.2 387 26.1
CiPaw.03G105100 Carya illinoinensis HOM05D003520 ORTHO05D003332 3.9e-09 67.8 425 23.5
Potri.012G138300 Populus trichocarpa HOM05D003520 ORTHO05D003332 3.9e-09 67.8 503 22.1
TWI60G1121 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 3.9e-09 67.8 495 24.4
MBI17_g21053_MAGBIO Magnolia biondii HOM05D003520 ORTHO05D003332 6.7e-09 67.0 343 32.4
Zm00001eb171140 Zea mays HOM05D023145 ORTHO05D003332 6.7e-09 67.0 84 40.5
CiPaw.04G065400 Carya illinoinensis HOM05D003520 ORTHO05D003332 2.0e-08 65.5 62 48.4
Cpa.g.sc107.38 Carica papaya HOM05D003520 ORTHO05D003332 4.4e-08 64.3 278 26.3
Nitab4.5_0001508g0010 Nicotiana tabacum HOM05D012625 ORTHO05D003332 4.4e-08 64.3 369 24.9
THA.LOC104800257 Tarenaya hassleriana HOM05D012366 ORTHO05D003332 7.4e-08 63.5 247 28.3
Peaxi162Scf00915g00037 Petunia axillaris HOM05D012625 ORTHO05D003332 1.7e-07 62.4 394 24.1
AL8G26610 Arabidopsis lyrata HOM05D012366 ORTHO05D003332 2.8e-07 61.6 261 25.3
Zm00001eb420370 Zea mays HOM05D003520 ORTHO05D003332 2.8e-07 61.6 271 26.2
MELO3C033074.2 Cucumis melo HOM05D003520 ORTHO05D003332 4.8e-07 60.8 80 36.2
Lsat_1_v5_gn_0_29760 Lactuca sativa HOM05D003520 ORTHO05D003332 6.3e-07 60.5 394 23.1
SEGI_35246 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 1.1e-06 59.7 60 50.0
CDE06G0068 Ceratophyllum demersum HOM05D003520 ORTHO05D003332 1.8e-06 58.9 103 36.9
Ah.07g207320 Amaranthus hybridus HOM05D025484 ORTHO05D017259 2.4e-06 58.5 117 37.6
AT5G52230 Arabidopsis thaliana HOM05D012366 ORTHO05D003332 3.1e-06 58.2 276 27.2
arahy.Tifrunner.gnm1.ann1.D6ZH50 Arachis hypogaea HOM05D003520 ORTHO05D003332 5.3e-06 57.4 406 23.6
BcaB08g35576 Brassica carinata HOM05D012366 ORTHO05D003332 5.3e-06 57.4 257 28.4
MELO3C005647.2 Cucumis melo HOM05D003520 ORTHO05D003332 5.3e-06 57.4 73 41.1


User provided reference genes

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