Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.18491 Avicennia marina HOM05D005325 ORTHO05D008457 2.5e-112 408.7 195 100.0
Migut.D00728 Erythranthe guttata HOM05D005325 ORTHO05D008457 7.7e-85 317.4 186 80.6
SGA_v2.0_scaffold8G04497 Striga asiatica HOM05D005325 ORTHO05D008457 1.6e-82 309.7 183 77.6
Oeu019913.1 Olea europaea HOM05D005325 ORTHO05D008457 2.7e-82 308.9 183 78.1
Dinv28619 Davidia involucrata HOM05D005325 ORTHO05D008457 1.3e-79 300.1 181 76.8
CSS0007520 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 1.9e-75 286.2 182 73.1
CSS0011737 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 1.9e-75 286.2 182 73.1
vmacro02986 Vaccinium macrocarpon HOM05D005325 ORTHO05D008457 1.9e-75 286.2 172 75.6
MELO3C025867.2 Cucumis melo HOM05D005325 ORTHO05D008457 7.2e-75 284.3 182 70.9
CAN.G700.24 Capsicum annuum HOM05D005325 ORTHO05D008457 1.6e-74 283.1 183 67.2
Prupe.6G060500 Prunus persica HOM05D005325 ORTHO05D008457 2.1e-74 282.7 176 71.6
Actinidia25148 Actinidia chinensis HOM05D005325 ORTHO05D008457 6.1e-74 281.2 178 71.3
Sed0000838 Sechium edule HOM05D005325 ORTHO05D008457 1.4e-73 280.0 181 70.2
Cc01_g13970 Coffea canephora HOM05D005325 ORTHO05D008457 2.3e-73 279.3 183 68.3
Rhsim13G0071900 Rhododendron simsii HOM05D005325 ORTHO05D008457 3.0e-73 278.9 173 72.8
Potri.001G249400 Populus trichocarpa HOM05D005325 ORTHO05D008457 1.2e-72 276.9 183 68.9
Sabra16G0151500 Salix brachista HOM05D005325 ORTHO05D008457 1.2e-72 276.9 183 68.9
arahy.Tifrunner.gnm1.ann1.VY3BKH Arachis hypogaea HOM05D005325 ORTHO05D008457 2.0e-72 276.2 186 68.8
CsaV3_6G016370 Cucumis sativus L. HOM05D005325 ORTHO05D008457 2.0e-72 276.2 174 71.3
DCAR_007389 Daucus carota HOM05D005325 ORTHO05D008457 2.6e-72 275.8 181 70.7
Cpa.g.sc112.50 Carica papaya HOM05D005325 ORTHO05D008457 3.4e-72 275.4 184 67.4
Ciclev10029368m.g Citrus clementina HOM05D005325 ORTHO05D008457 3.4e-72 275.4 183 70.5
Glyma.02G225500 Glycine max HOM05D005325 ORTHO05D008457 3.4e-72 275.4 183 67.2
arahy.Tifrunner.gnm1.ann1.CQ7B2G Arachis hypogaea HOM05D005325 ORTHO05D008457 4.4e-72 275.0 185 69.2
TWI31G1198 Tripterygium wilfordii HOM05D005325 ORTHO05D008457 4.4e-72 275.0 177 71.2
COL.COLO4_19112 Corchorus olitorius HOM05D005325 ORTHO05D008457 9.8e-72 273.9 183 68.3
Glyma.14G192300 Glycine max HOM05D005325 ORTHO05D008457 9.8e-72 273.9 183 67.2
MBI14_g04425_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 1.7e-71 273.1 183 69.9
MD11G1079900 Malus domestica HOM05D005325 ORTHO05D008457 2.2e-71 272.7 183 66.7
Ca_05587_v3 Cicer arietinum L. HOM05D005325 ORTHO05D008457 2.8e-71 272.3 185 67.6
Sopen09g014710 Solanum pennellii HOM05D005325 ORTHO05D008457 8.3e-71 270.8 183 64.5
Manes.02G121500 Manihot esculenta HOM05D005325 ORTHO05D008457 1.1e-70 270.4 187 67.4
Carub.0004s1073 Capsella rubella HOM05D005325 ORTHO05D008457 1.4e-70 270.0 180 70.0
Medtr5g069880 Medicago truncatula HOM05D005325 ORTHO05D008457 1.4e-70 270.0 185 65.4
Nn2g11401 Nelumbo nucifera HOM05D005325 ORTHO05D008457 1.4e-70 270.0 180 68.3
TPR.G24020 Trifolium pratense HOM05D005325 ORTHO05D008457 1.8e-70 269.6 179 68.2
Cfa011661 Carpinus fangiana HOM05D005325 ORTHO05D008457 2.4e-70 269.2 183 67.2
Eucgr.J01937 Eucalyptus grandis HOM05D005325 ORTHO05D008457 2.4e-70 269.2 182 67.6
Psat2g059320 Pisum sativum HOM05D005325 ORTHO05D008457 2.4e-70 269.2 185 65.4
RcHm_v2.0_Chr5g0068731 Rosa chinensis HOM05D005325 ORTHO05D008457 3.1e-70 268.9 184 66.3
Sc12g0000890 Simmondsia chinensis HOM05D005325 ORTHO05D008457 3.1e-70 268.9 173 69.9
CARHR122960 Cardamine hirsuta HOM05D005325 ORTHO05D008457 4.1e-70 268.5 173 71.7
Solyc09g031770.3 Solanum lycopersicum HOM05D005325 ORTHO05D008457 4.1e-70 268.5 180 65.0
PGSC0003DMG400020866 Solanum tuberosum HOM05D005325 ORTHO05D008457 5.4e-70 268.1 183 63.9
AUR62020101 Chenopodium quinoa HOM05D005325 ORTHO05D008457 7.0e-70 267.7 187 64.2
Nitab4.5_0000408g0140 Nicotiana tabacum HOM05D005325 ORTHO05D008457 7.0e-70 267.7 173 68.2
AUR62001679 Chenopodium quinoa HOM05D005325 ORTHO05D008457 9.2e-70 267.3 187 63.6
Thecc.09G305000 Theobroma cacao HOM05D005325 ORTHO05D008457 9.2e-70 267.3 183 66.1
PGR119G0476 Punica granatum HOM05D005325 ORTHO05D008457 1.6e-69 266.5 181 67.4
GSVIVG01024786001 Vitis vinifera HOM05D005325 ORTHO05D008457 1.6e-69 266.5 176 69.3
unitig_62.g23862 Utricularia gibba HOM05D005325 ORTHO05D008457 2.0e-69 266.2 180 66.7
unitig_64.g29774 Utricularia gibba HOM05D005325 ORTHO05D008457 2.0e-69 266.2 180 66.7
AL4G24390 Arabidopsis lyrata HOM05D005325 ORTHO05D008457 7.8e-69 264.2 170 71.8
QL01p037417 Quercus lobata HOM05D005325 ORTHO05D008457 1.0e-68 263.8 180 68.9
Haze_24265 Corylus avellana HOM05D005325 ORTHO05D008457 1.3e-68 263.5 183 65.6
Thhalv10017013m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 1.3e-68 263.5 172 70.3
ECA248G3745 Erigeron canadensis HOM05D005325 ORTHO05D008457 2.3e-68 262.7 183 67.8
Lalb_Chr04g0252301 Lupinus albus HOM05D005325 ORTHO05D008457 2.9e-68 262.3 177 67.8
Hund04885 Selenicereus undatus HOM05D005325 ORTHO05D008457 2.9e-68 262.3 181 65.7
FvH4_3g38250 Fragaria vesca HOM05D005325 ORTHO05D008457 5.0e-68 261.5 184 63.0
BcaC02g11048 Brassica carinata HOM05D005325 ORTHO05D008457 6.6e-68 261.2 181 66.3
CiPaw.13G080600 Carya illinoinensis HOM05D005325 ORTHO05D008457 6.6e-68 261.2 176 67.0
LjContig00155g0003403 Lotus japonicus HOM05D005325 ORTHO05D008457 1.1e-67 260.4 173 68.2
Peaxi162Scf00116g00163 Petunia axillaris HOM05D005325 ORTHO05D008457 1.1e-67 260.4 186 63.4
VMungo0647G2564 Vigna mungo HOM05D005325 ORTHO05D008457 1.9e-67 259.6 184 64.7
BcaB02g10271 Brassica carinata HOM05D005325 ORTHO05D008457 2.5e-67 259.2 181 66.9
Duzib170G0996 Durio zibethinus HOM05D005325 ORTHO05D008457 3.3e-67 258.8 184 64.1
Ah.08g220810 Amaranthus hybridus HOM05D005325 ORTHO05D008457 5.6e-67 258.1 173 68.2
BolC4t23643H Brassica oleracea HOM05D005325 ORTHO05D008457 5.6e-67 258.1 182 66.5
FAN11G0298 Fragaria x ananassa HOM05D005325 ORTHO05D008457 5.6e-67 258.1 184 62.5
Gohir.D05G090700 Gossypium hirsutum HOM05D005325 ORTHO05D008457 7.3e-67 257.7 178 66.9
Gorai.009G093200 Gossypium raimondii HOM05D005325 ORTHO05D008457 7.3e-67 257.7 178 66.3
Phvul.008G262400 Phaseolus vulgaris HOM05D005325 ORTHO05D008457 9.5e-67 257.3 176 65.3
Sp4g12350 Schrenkiella parvula HOM05D005325 ORTHO05D008457 1.6e-66 256.5 179 67.0
Gohir.A05G089800 Gossypium hirsutum HOM05D005325 ORTHO05D008457 2.1e-66 256.1 180 65.6
AT2G29640 Arabidopsis thaliana HOM05D005325 ORTHO05D008457 2.8e-66 255.8 167 70.7
Lsat_1_v5_gn_5_172281 Lactuca sativa HOM05D005325 ORTHO05D008457 3.6e-66 255.4 182 65.9
FAN25G2817 Fragaria x ananassa HOM05D005325 ORTHO05D008457 4.7e-66 255.0 181 62.4
CANSAT54G0458 Cannabis sativa HOM05D005325 ORTHO05D008457 6.1e-66 254.6 176 65.9
Aa31LG5G6860 Aethionema arabicum HOM05D005325 ORTHO05D008457 1.4e-65 253.4 173 67.1
PSO384G1123 Papaver somniferum HOM05D005325 ORTHO05D008457 5.2e-65 251.5 185 63.2
C04p21170 Brassica napus HOM05D005325 ORTHO05D008457 8.9e-65 250.8 181 64.6
PSO339G0931 Papaver somniferum HOM05D005325 ORTHO05D008457 8.9e-65 250.8 185 63.2
BraA05t20490Z Brassica rapa HOM05D005325 ORTHO05D008457 3.4e-64 248.8 167 68.9
A05p15750 Brassica napus HOM05D005325 ORTHO05D008457 7.5e-64 247.7 167 68.3
Zm00001eb011730 Zea mays HOM05D005325 ORTHO05D008457 1.3e-63 246.9 175 64.0
BcaB06g28320 Brassica carinata HOM05D005325 ORTHO05D008457 6.4e-63 244.6 173 65.3
Aqoxy4G02653 Aquilegia oxysepala HOM05D005325 ORTHO05D008457 1.8e-62 243.0 181 61.3
Os03g0265200 Oryza sativa ssp. japonica HOM05D005325 ORTHO05D008457 1.8e-62 243.0 175 63.4
BolC4t27390H Brassica oleracea HOM05D005325 ORTHO05D008457 2.4e-62 242.7 170 66.5
Lj1P141T46 Lonicera japonica HOM05D005325 ORTHO05D008457 9.2e-62 240.7 156 71.8
A04p22570 Brassica napus HOM05D005325 ORTHO05D008457 1.6e-61 240.0 173 63.6
FAN21G2059 Fragaria x ananassa HOM05D005325 ORTHO05D008457 6.6e-60 234.6 150 68.7
TAR636G1969 Trochodendron aralioides HOM05D005325 ORTHO05D008457 1.1e-59 233.8 155 67.7
BraA04t17802Z Brassica rapa HOM05D005325 ORTHO05D008457 1.5e-59 233.4 166 64.5
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 2.5e-59 232.6 167 64.7
BcaC02g08075 Brassica carinata HOM05D005325 ORTHO05D008457 5.6e-59 231.5 171 64.9
Nitab4.5_0006983g0030 Nicotiana tabacum HOM05D005325 ORTHO05D008457 5.6e-59 231.5 151 66.2
EL10Ac7g16130 Beta vulgaris HOM05D005325 ORTHO05D008457 6.2e-58 228.0 173 60.1
FAN16G2295 Fragaria x ananassa HOM05D005325 ORTHO05D008457 4.4e-56 221.9 152 63.2
TAR633G2421 Trochodendron aralioides HOM05D005325 ORTHO05D008457 4.4e-56 221.9 150 67.3
Duzib168G2216 Durio zibethinus HOM05D005325 ORTHO05D008457 1.6e-53 213.4 168 57.7
SHI11316 Sapria himalayana HOM05D005325 ORTHO05D008457 2.5e-51 206.1 177 58.2
HPP92_015197 Vanilla planifolia HOM05D005325 ORTHO05D008457 3.6e-50 202.2 159 59.1
Pp3c13_16720 Physcomitrium patens HOM05D005325 ORTHO05D008457 5.4e-46 188.3 176 48.3
Thhalv10017876m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 1.2e-45 187.2 130 64.6
AagrBONN_evm.TU.Sc2ySwM_362.267 Anthoceros agrestis HOM05D005325 ORTHO05D008457 1.6e-45 186.8 178 50.6
Mapoly0026s0005 Marchantia polymorpha HOM05D005325 ORTHO05D008457 3.0e-44 182.6 176 48.3
C04p58710 Brassica napus HOM05D005325 ORTHO05D008457 1.1e-43 180.6 124 66.1
AagrBONN_evm.TU.Sc2ySwM_362.272 Anthoceros agrestis HOM05D005325 ORTHO05D008457 6.8e-41 171.4 182 47.8
CDE10G0077 Ceratophyllum demersum HOM05D000561 ORTHO05D000514 4.9e-39 165.2 143 58.7
SMO351G0628 Selaginella moellendorffii HOM05D005325 ORTHO05D008457 4.9e-39 165.2 180 46.1
MBI14_g39232_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 7.8e-29 131.3 132 53.0
ClCG06G015800 Citrullus lanatus HOM05D005325 ORTHO05D008457 7.6e-24 114.8 155 42.6
Atru.chr3.4243 Acer truncatum HOM05D005325 ORTHO05D008457 7.1e-22 108.2 71 71.8
Haze_27525 Corylus avellana HOM05D005325 ORTHO05D008457 7.9e-21 104.8 174 36.2
Cre03.g146707 Chlamydomonas reinhardtii HOM05D005325 ORTHO05D008457 1.3e-20 104.0 177 40.1
Aa31LG5G6850 Aethionema arabicum HOM05D005325 ORTHO05D008457 3.4e-16 89.4 59 61.0
Lsat_1_v5_gn_9_104180 Lactuca sativa HOM05D005325 ORTHO05D024237 2.4e-14 83.2 111 44.1
unitig_46.g18409 Utricularia gibba HOM05D005750 ORTHO05D007126 2.4e-09 66.6 176 29.5
BcaB01g00216 Brassica carinata HOM05D005750 ORTHO05D007126 9.0e-09 64.7 181 29.3
C08p29390 Brassica napus HOM05D005750 ORTHO05D007126 9.0e-09 64.7 180 29.4
BolC8t50540H Brassica oleracea HOM05D005750 ORTHO05D007126 9.0e-09 64.7 180 29.4
Gorai.002G260600 Gossypium raimondii HOM05D005750 ORTHO05D007126 2.6e-08 63.2 178 28.1
A09p47130 Brassica napus HOM05D005750 ORTHO05D007126 3.4e-08 62.8 180 28.9
BraA09t40175Z Brassica rapa HOM05D005750 ORTHO05D007126 3.4e-08 62.8 180 28.9
Gohir.A01G224900 Gossypium hirsutum HOM05D005750 ORTHO05D007126 3.4e-08 62.8 178 28.1
Gohir.D01G214500 Gossypium hirsutum HOM05D005750 ORTHO05D007126 3.4e-08 62.8 178 28.1
Cpa.g.sc56.104 Carica papaya HOM05D005750 ORTHO05D007126 7.6e-08 61.6 182 27.5
Thecc.05G023200 Theobroma cacao HOM05D005750 ORTHO05D007126 7.6e-08 61.6 176 27.8
AL5G35150 Arabidopsis lyrata HOM05D005750 ORTHO05D007126 1.0e-07 61.2 180 27.8
SGA_v2.0_scaffold240G44116 Striga asiatica HOM05D005750 ORTHO05D007126 1.0e-07 61.2 176 29.0
AT3G54130 Arabidopsis thaliana HOM05D005750 ORTHO05D007126 1.3e-07 60.8 180 27.8
Psat7g247000 Pisum sativum HOM05D005750 ORTHO05D007126 1.7e-07 60.5 175 28.0
THA.LOC104823389 Tarenaya hassleriana HOM05D005750 ORTHO05D007126 1.7e-07 60.5 181 26.0
Thhalv10010608m.g Eutrema salsugineum HOM05D005750 ORTHO05D007126 3.8e-07 59.3 180 27.2
Potri.016G110300 Populus trichocarpa HOM05D005750 ORTHO05D007126 3.8e-07 59.3 179 26.3
Duzib128G1738 Durio zibethinus HOM05D005750 ORTHO05D007126 4.9e-07 58.9 179 27.4
Migut.J00232 Erythranthe guttata HOM05D005750 ORTHO05D007126 6.5e-07 58.5 174 27.6
CARHR164010 Cardamine hirsuta HOM05D005750 ORTHO05D007126 8.4e-07 58.2 180 27.2
Duzib093G0788 Durio zibethinus HOM05D005750 ORTHO05D007126 8.4e-07 58.2 178 27.0
Eucgr.B02764 Eucalyptus grandis HOM05D005750 ORTHO05D007126 1.1e-06 57.8 189 25.9
Manes.09G101500 Manihot esculenta HOM05D005750 ORTHO05D007126 1.4e-06 57.4 178 27.0
Ah.11g045300 Amaranthus hybridus HOM05D005750 ORTHO05D007126 1.9e-06 57.0 178 27.5
Carub.0005s2072 Capsella rubella HOM05D005750 ORTHO05D007126 1.9e-06 57.0 180 27.2
Sopen10g036170 Solanum pennellii HOM05D005750 ORTHO05D007126 1.9e-06 57.0 174 25.3
RcHm_v2.0_Chr3g0463971 Rosa chinensis HOM05D005750 ORTHO05D007126 5.5e-06 55.5 182 26.9
Potri.006G095700 Populus trichocarpa HOM05D005750 ORTHO05D007126 7.1e-06 55.1 179 26.8


User provided reference genes

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