Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.18400 Avicennia marina HOM05D004119 ORTHO05D004797 0.0e+00 1198.0 587 100.0
MSTRG.12487 Avicennia marina HOM05D004119 ORTHO05D004797 8.6e-297 1023.1 592 84.1
SalBow2G0171 Salvia bowleyana HOM05D004119 ORTHO05D004797 2.5e-296 1021.5 621 81.6
Oeu043306.1 Olea europaea HOM05D004119 ORTHO05D004797 1.5e-293 1012.3 582 84.7
Dinv36315 Davidia involucrata HOM05D004119 ORTHO05D004797 3.7e-292 1007.7 587 83.3
Cc01_g03810 Coffea canephora HOM05D004119 ORTHO05D004797 1.6e-290 1002.3 584 82.2
Migut.N02286 Erythranthe guttata HOM05D004119 ORTHO05D004797 2.0e-290 1001.9 595 82.5
SGA_v2.0_scaffold3G01554 Striga asiatica HOM05D004119 ORTHO05D004797 3.5e-290 1001.1 600 82.0
Oeu055814.1 Olea europaea HOM05D004119 ORTHO05D004797 2.3e-289 998.4 580 84.8
CiPaw.14G126500 Carya illinoinensis HOM05D004119 ORTHO05D004797 2.5e-288 995.0 586 81.2
Manes.14G015300 Manihot esculenta HOM05D004119 ORTHO05D004797 7.3e-288 993.4 584 80.3
Atru.chr3.2434 Acer truncatum HOM05D004119 ORTHO05D004797 1.8e-286 988.8 575 82.3
Atru.chr3.2433 Acer truncatum HOM05D004119 ORTHO05D004797 1.2e-285 986.1 575 81.9
QL01p009105 Quercus lobata HOM05D004119 ORTHO05D004797 1.5e-285 985.7 591 79.9
Nitab4.5_0001568g0150 Nicotiana tabacum HOM05D004119 ORTHO05D004797 3.4e-285 984.6 583 80.8
GSVIVG01025352001 Vitis vinifera HOM05D004119 ORTHO05D004797 2.2e-284 981.9 585 80.2
Ciclev10014571m.g Citrus clementina HOM05D004119 ORTHO05D004797 4.9e-284 980.7 577 81.5
Peaxi162Scf00403g00212 Petunia axillaris HOM05D004119 ORTHO05D004797 1.1e-283 979.5 583 79.9
DCAR_002029 Daucus carota HOM05D004119 ORTHO05D004797 1.4e-283 979.2 576 80.9
Hma1.2p1_1169F.1_g263240 Hydrangea macrophylla HOM05D004119 ORTHO05D004797 1.4e-283 979.2 584 80.5
CsaV3_1G042400 Cucumis sativus L. HOM05D004119 ORTHO05D004797 2.4e-283 978.4 588 79.3
CANSAT54G1702 Cannabis sativa HOM05D004119 ORTHO05D004797 5.4e-283 977.2 587 79.4
COL.COLO4_10388 Corchorus olitorius HOM05D004119 ORTHO05D004797 7.1e-283 976.9 587 79.6
ClCG03G013650 Citrullus lanatus HOM05D004119 ORTHO05D004797 9.2e-283 976.5 585 79.3
CAN.G649.14 Capsicum annuum HOM05D004119 ORTHO05D004797 1.6e-282 975.7 575 80.9
CiPaw.13G168300 Carya illinoinensis HOM05D004119 ORTHO05D004797 2.1e-282 975.3 584 79.3
PGR119G0026 Punica granatum HOM05D004119 ORTHO05D004797 2.1e-282 975.3 579 80.5
Thecc.09G219300 Theobroma cacao HOM05D004119 ORTHO05D004797 3.5e-282 974.5 589 79.3
TWI60G0817 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 4.6e-282 974.2 582 80.8
MELO3C015675.2 Cucumis melo HOM05D004119 ORTHO05D004797 1.0e-281 973.0 588 78.7
Duzib168G2002 Durio zibethinus HOM05D004119 ORTHO05D004797 1.3e-281 972.6 589 78.8
Peaxi162Scf00062g01417 Petunia axillaris HOM05D004119 ORTHO05D004797 1.3e-281 972.6 583 79.4
Sopen01g002470 Solanum pennellii HOM05D004119 ORTHO05D004797 1.7e-281 972.2 579 80.3
Prupe.6G017800 Prunus persica HOM05D004119 ORTHO05D004797 3.0e-281 971.5 592 78.7
Solyc01g006490.4 Solanum lycopersicum HOM05D004119 ORTHO05D004797 5.1e-281 970.7 585 79.8
Gorai.004G018600 Gossypium raimondii HOM05D004119 ORTHO05D004797 1.9e-280 968.8 585 78.5
Gohir.D05G069700 Gossypium hirsutum HOM05D004119 ORTHO05D004797 5.6e-280 967.2 589 78.8
CSS0046641 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 9.5e-280 966.5 588 80.6
Gohir.A08G012900 Gossypium hirsutum HOM05D004119 ORTHO05D004797 1.2e-279 966.1 586 78.2
MD03G1018700 Malus domestica HOM05D004119 ORTHO05D004797 2.1e-279 965.3 592 78.9
Aqoxy2G00086 Aquilegia oxysepala HOM05D004119 ORTHO05D004797 2.8e-279 964.9 577 80.1
TWI32G0563 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 2.8e-279 964.9 587 79.4
Gohir.A05G066800 Gossypium hirsutum HOM05D004119 ORTHO05D004797 6.2e-279 963.8 589 78.8
Eucgr.B02600 Eucalyptus grandis HOM05D004119 ORTHO05D004797 1.1e-278 963.0 583 78.9
Potri.001G013900 Populus trichocarpa HOM05D004119 ORTHO05D004797 1.1e-278 963.0 584 77.9
Gohir.D08G023300 Gossypium hirsutum HOM05D004119 ORTHO05D004797 3.1e-278 961.4 585 78.1
PGSC0003DMG400032205 Solanum tuberosum HOM05D004119 ORTHO05D004797 4.0e-278 961.1 579 80.0
Gorai.009G070700 Gossypium raimondii HOM05D004119 ORTHO05D004797 6.8e-278 960.3 589 78.4
Nitab4.5_0004389g0050 Nicotiana tabacum HOM05D004119 ORTHO05D004797 7.6e-277 956.8 578 78.4
Sed0015121 Sechium edule HOM05D004119 ORTHO05D004797 7.6e-277 956.8 585 77.9
Nn2g15648 Nelumbo nucifera HOM05D004119 ORTHO05D004797 9.9e-277 956.4 584 78.3
Nitab4.5_0001146g0130 Nicotiana tabacum HOM05D004119 ORTHO05D004797 1.3e-276 956.1 583 79.8
AUR62019225 Chenopodium quinoa HOM05D004119 ORTHO05D004797 2.9e-276 954.9 575 78.6
Cpa.g.sc117.3 Carica papaya HOM05D004119 ORTHO05D004797 1.9e-275 952.2 582 78.9
Sabra01G0010200 Salix brachista HOM05D004119 ORTHO05D004797 1.9e-275 952.2 584 77.2
AUR62000053 Chenopodium quinoa HOM05D004119 ORTHO05D004797 2.4e-275 951.8 575 78.6
MD11G1020700 Malus domestica HOM05D004119 ORTHO05D004797 4.1e-275 951.0 578 78.9
FvH4_3g43840 Fragaria vesca HOM05D004119 ORTHO05D004797 5.4e-275 950.7 584 77.7
Lsat_1_v5_gn_6_49801 Lactuca sativa HOM05D004119 ORTHO05D004797 9.2e-275 949.9 567 79.0
FAN11G1732 Fragaria x ananassa HOM05D004119 ORTHO05D004797 1.6e-274 949.1 584 77.7
FAN25G0197 Fragaria x ananassa HOM05D004119 ORTHO05D004797 2.1e-274 948.7 584 77.9
Haze_23030 Corylus avellana HOM05D004119 ORTHO05D004797 4.6e-274 947.6 634 73.2
Phvul.007G003400 Phaseolus vulgaris HOM05D004119 ORTHO05D004797 6.0e-274 947.2 581 77.8
RcHm_v2.0_Chr5g0079321 Rosa chinensis HOM05D004119 ORTHO05D004797 6.0e-274 947.2 584 77.6
Sed0006721 Sechium edule HOM05D004119 ORTHO05D004797 1.3e-273 946.0 586 76.8
THA.LOC104811125 Tarenaya hassleriana HOM05D004119 ORTHO05D004797 2.3e-273 945.3 589 77.4
PSO339G4050 Papaver somniferum HOM05D004119 ORTHO05D004797 3.9e-273 944.5 587 75.6
HanXRQChr11g0345481 Helianthus annuus HOM05D004119 ORTHO05D004797 6.6e-273 943.7 587 75.6
Lj5g0022671 Lotus japonicus HOM05D004119 ORTHO05D004797 1.1e-272 943.0 568 78.5
PSO384G1641 Papaver somniferum HOM05D004119 ORTHO05D004797 1.5e-272 942.6 587 75.5
Lalb_Chr21g0307631 Lupinus albus HOM05D004119 ORTHO05D004797 5.6e-272 940.6 575 77.7
Lalb_Chr02g0144391 Lupinus albus HOM05D004119 ORTHO05D004797 7.3e-272 940.3 572 79.2
VMungo0720G1960 Vigna mungo HOM05D004119 ORTHO05D004797 9.6e-272 939.9 581 77.1
CARHR200430 Cardamine hirsuta HOM05D004119 ORTHO05D004797 4.7e-271 937.6 583 76.2
AL6G23620 Arabidopsis lyrata HOM05D004119 ORTHO05D004797 1.8e-270 935.6 584 76.5
Thhalv10012956m.g Eutrema salsugineum HOM05D004119 ORTHO05D004797 1.8e-270 935.6 584 76.4
Glyma.20G246800 Glycine max HOM05D004119 ORTHO05D004797 2.4e-270 935.3 545 80.6
AT5G13030 Arabidopsis thaliana HOM05D004119 ORTHO05D004797 4.0e-270 934.5 584 76.7
ECA233G2530 Erigeron canadensis HOM05D004119 ORTHO05D004797 5.2e-270 934.1 566 78.1
Sp6g30940 Schrenkiella parvula HOM05D004119 ORTHO05D004797 5.2e-270 934.1 584 76.5
Carub.0006s1120 Capsella rubella HOM05D004119 ORTHO05D004797 6.8e-270 933.7 584 76.2
ATR0605G198 Amborella trichopoda HOM05D004119 ORTHO05D004797 8.9e-270 933.3 556 79.9
Solyc12g100200.2 Solanum lycopersicum HOM05D004119 ORTHO05D004797 2.0e-269 932.2 578 77.2
vmacro12703 Vaccinium macrocarpon HOM05D004119 ORTHO05D004797 7.6e-269 930.2 517 85.1
ECA248G2677 Erigeron canadensis HOM05D004119 ORTHO05D004797 1.3e-268 929.5 587 75.1
Medtr1g116875 Medicago truncatula HOM05D004119 ORTHO05D004797 1.3e-268 929.5 575 76.7
HanXRQChr02g0056721 Helianthus annuus HOM05D004119 ORTHO05D004797 4.9e-268 927.5 573 76.8
Lj1C433G5 Lonicera japonica HOM05D004119 ORTHO05D004797 8.4e-268 926.8 552 81.2
Sopen12g034830 Solanum pennellii HOM05D004119 ORTHO05D004797 1.4e-267 926.0 578 76.8
Aa31LG3G14630 Aethionema arabicum HOM05D004119 ORTHO05D004797 2.4e-267 925.2 573 76.6
C09p64070 Brassica napus HOM05D004119 ORTHO05D004797 2.7e-266 921.8 585 75.7
Psat6g242880 Pisum sativum HOM05D004119 ORTHO05D004797 2.7e-266 921.8 585 74.9
BraA10t44578Z Brassica rapa HOM05D004119 ORTHO05D004797 3.5e-266 921.4 585 75.7
A10p25160 Brassica napus HOM05D004119 ORTHO05D004797 6.0e-266 920.6 585 75.7
HanXRQChr13g0404241 Helianthus annuus HOM05D004119 ORTHO05D004797 1.0e-265 919.8 584 75.3
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 2.3e-265 918.7 558 77.6
BolC9t59244H Brassica oleracea HOM05D004119 ORTHO05D004797 3.0e-265 918.3 583 75.6
Os06g0320700 Oryza sativa ssp. japonica HOM05D004119 ORTHO05D004797 5.1e-265 917.5 553 78.1
FAN21G0229 Fragaria x ananassa HOM05D004119 ORTHO05D004797 5.6e-264 914.1 574 76.7
CAN.G575.41 Capsicum annuum HOM05D004119 ORTHO05D004797 1.6e-263 912.5 550 78.4
Rhsim01G0187100 Rhododendron simsii HOM05D004119 ORTHO05D004797 8.1e-263 910.2 674 68.5
TPR.G8893 Trifolium pratense HOM05D004119 ORTHO05D004797 1.4e-262 909.4 531 79.8
Lsat_1_v5_gn_1_68000 Lactuca sativa HOM05D004119 ORTHO05D004797 1.5e-256 889.4 582 75.1
CDE04G3728 Ceratophyllum demersum HOM05D004119 ORTHO05D004797 2.5e-256 888.6 532 78.2
HPP92_018953 Vanilla planifolia HOM05D004119 ORTHO05D004797 5.6e-256 887.5 558 76.2
A03p05770 Brassica napus HOM05D004119 ORTHO05D004797 2.4e-254 882.1 586 73.5
BolC3t13178H Brassica oleracea HOM05D004119 ORTHO05D004797 2.4e-254 882.1 586 73.2
BraA03t09916Z Brassica rapa HOM05D004119 ORTHO05D004797 2.4e-254 882.1 586 73.2
C03p06720 Brassica napus HOM05D004119 ORTHO05D004797 1.2e-253 879.8 587 72.9
SEGI_31462 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 6.9e-246 854.0 552 73.4
Actinidia06316 Actinidia chinensis HOM05D004119 ORTHO05D004797 1.6e-242 842.8 574 73.0
BcaB01g05381 Brassica carinata HOM05D004119 ORTHO05D004797 1.6e-242 842.8 586 70.3
Lj2C671G7 Lonicera japonica HOM05D004119 ORTHO05D004797 1.6e-242 842.8 587 71.9
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 2.5e-240 835.5 551 76.2
Hund21812 Selenicereus undatus HOM05D004119 ORTHO05D004797 1.8e-238 829.3 490 80.2
Lj1A436T13 Lonicera japonica HOM05D004119 ORTHO05D004797 1.1e-232 810.1 448 86.2
Sc16g0011910 Simmondsia chinensis HOM05D004119 ORTHO05D004797 1.8e-230 802.7 448 83.9
Mapoly0063s0012 Marchantia polymorpha HOM05D004119 ORTHO05D004797 5.9e-229 797.7 548 68.4
MBI04_g46409_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 6.3e-223 777.7 548 70.4
AagrBONN_evm.TU.Sc2ySwM_344.3798 Anthoceros agrestis HOM05D004119 ORTHO05D004797 8.2e-223 777.3 549 67.8
FAN16G3698 Fragaria x ananassa HOM05D004119 ORTHO05D004797 5.5e-219 764.6 439 81.8
Pp3c9_22190 Physcomitrium patens HOM05D004119 ORTHO05D004797 3.6e-218 761.9 588 62.6
SMO134G0253 Selaginella moellendorffii HOM05D004119 ORTHO05D004797 9.1e-206 720.7 517 69.4
TAR623G1465 Trochodendron aralioides HOM05D004119 ORTHO05D004797 5.2e-193 678.3 491 68.8
SEGI_38661 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 1.1e-190 670.6 452 71.9
CBR_g38091 Chara braunii HOM05D004119 ORTHO05D004797 3.6e-178 629.0 538 58.6
Zm00001eb381770 Zea mays HOM05D004119 ORTHO05D004797 2.3e-172 609.8 361 79.5
PGR119G0420 Punica granatum HOM05D004119 ORTHO05D004797 3.4e-160 569.3 344 77.6
Nn7g36025 Nelumbo nucifera HOM05D004119 ORTHO05D004797 7.6e-160 568.2 584 54.1
EL10Ac4g10322 Beta vulgaris HOM05D004119 ORTHO05D004797 4.8e-146 522.3 332 75.9
Oeu024459.1 Olea europaea HOM05D004119 ORTHO05D004797 4.4e-144 515.8 417 64.7
Cre16.g648900 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 4.2e-142 509.2 560 49.3
Dinv08059 Davidia involucrata HOM05D004119 ORTHO05D004797 2.1e-138 496.9 559 52.2
CSS0049397 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 6.2e-138 495.4 278 85.3
arahy.Tifrunner.gnm1.ann1.ZPWD91 Arachis hypogaea HOM05D004119 ORTHO05D004797 7.6e-136 488.4 280 80.7
arahy.Tifrunner.gnm1.ann1.J6MIXF Arachis hypogaea HOM05D004119 ORTHO05D004797 8.1e-130 468.4 285 79.6
PRCOL_00001378 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 9.0e-113 411.8 574 43.4
Psat3g017080 Pisum sativum HOM05D004119 ORTHO05D004797 2.9e-103 380.2 288 61.8
Cre02.g108250 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 2.9e-95 353.6 644 36.0
FvH4_3g45150 Fragaria vesca HOM05D004119 ORTHO05D004797 3.5e-88 330.1 263 66.2
RcHm_v2.0_Chr5g0079021 Rosa chinensis HOM05D004119 ORTHO05D004797 1.9e-86 324.3 184 81.5
TAR369G0071 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.6e-80 304.7 179 80.4
Glyma.10G296266 Glycine max HOM05D004119 ORTHO05D004797 4.5e-80 303.1 188 74.5
Cfa025573 Carpinus fangiana HOM05D004119 ORTHO05D004797 5.0e-79 299.7 558 37.3
RcHm_v2.0_Chr5g0079011 Rosa chinensis HOM05D004119 ORTHO05D004797 1.6e-77 294.7 179 77.7
Pp3s34_210 Physcomitrium patens HOM05D000198 ORTHO05D004797 2.7e-77 293.9 568 35.2
Lj1P432T25 Lonicera japonica HOM05D004119 ORTHO05D004797 3.6e-77 293.5 167 83.2
PRCOL_00005150 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 5.7e-75 286.2 602 33.7
Actinidia39374 Actinidia chinensis HOM05D004119 ORTHO05D004797 4.9e-66 256.5 324 47.5
MCO09G196 Micromonas commoda HOM05D004119 ORTHO05D004797 4.1e-65 253.4 609 32.8
TAR369G0199 Trochodendron aralioides HOM05D004119 ORTHO05D004797 3.5e-64 250.4 140 82.9
PRCOL_00005494 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 1.7e-58 231.5 593 30.7
Psat3g137640 Pisum sativum HOM05D004119 ORTHO05D004797 3.7e-58 230.3 183 61.2
MD11G1020000 Malus domestica HOM05D004119 ORTHO05D004797 1.2e-51 208.8 120 85.0
TAR362G0095 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.7e-50 204.9 117 81.2
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 2.8e-45 187.6 100 87.0
Manes.06G169401 Manihot esculenta HOM05D004119 ORTHO05D004797 3.2e-41 174.1 106 77.4
VMungo0720G3038 Vigna mungo HOM05D004119 ORTHO05D004797 7.3e-38 162.9 155 54.8
TAR362G1239 Trochodendron aralioides HOM05D004119 ORTHO05D004797 4.0e-36 157.1 129 62.0
TPR.G14880 Trifolium pratense HOM05D004119 ORTHO05D004797 5.6e-30 136.7 76 80.3
MBI04_g37845_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 1.1e-28 132.5 65 93.8
Hund21661 Selenicereus undatus HOM05D002401 ORTHO05D007109 1.4e-28 132.1 67 88.1
TAR369G0705 Trochodendron aralioides HOM05D004119 ORTHO05D004797 2.0e-27 128.3 120 57.5
Lsat_1_v5_gn_4_11801 Lactuca sativa HOM05D004119 ORTHO05D004797 3.2e-25 120.9 137 46.7
Lj1A436G11 Lonicera japonica HOM05D004119 ORTHO05D004797 3.2e-25 120.9 95 63.2
RcHm_v2.0_Chr5g0079031 Rosa chinensis HOM05D004119 ORTHO05D004797 5.8e-19 100.1 63 74.6
TPR.G25082 Trifolium pratense HOM05D004119 ORTHO05D004797 6.9e-12 76.6 78 56.4
TAR633G0263 Trochodendron aralioides HOM05D004119 ORTHO05D004797 2.6e-11 74.7 54 68.5
HanXRQChr13g0426091 Helianthus annuus HOM05D004119 ORTHO05D004797 1.9e-06 58.5 36 66.7
RcHm_v2.0_Chr5g0079041 Rosa chinensis HOM05D004119 ORTHO05D004797 2.5e-06 58.2 71 46.5


User provided reference genes

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