Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.18392 Avicennia marina HOM05D004629 ORTHO05D006604 0.0e+00 1261.1 635 100.0
SGA_v2.0_scaffold1G00754 Striga asiatica HOM05D004629 ORTHO05D006604 0.0e+00 1188.7 635 93.4
SalBow2G2882 Salvia bowleyana HOM05D004629 ORTHO05D006604 0.0e+00 1188.3 635 93.5
Prupe.6G013000 Prunus persica HOM05D004629 ORTHO05D006604 0.0e+00 1176.0 633 91.9
MD11G1015100 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1175.6 633 91.8
Oeu038860.1 Olea europaea HOM05D004629 ORTHO05D006604 0.0e+00 1172.1 635 92.1
MD03G1012400 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1171.0 633 91.8
VMungo0720G3137 Vigna mungo HOM05D004629 ORTHO05D006604 0.0e+00 1169.5 630 91.7
Dinv36331 Davidia involucrata HOM05D004629 ORTHO05D006604 0.0e+00 1169.1 633 91.5
Potri.001G010800 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1169.1 633 91.6
Potri.003G215100 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1168.7 633 91.5
CiPaw.13G171100 Carya illinoinensis HOM05D004629 ORTHO05D006604 0.0e+00 1166.8 633 90.8
Migut.N02273 Erythranthe guttata HOM05D004629 ORTHO05D006604 0.0e+00 1166.8 635 91.3
Phvul.007G006400 Phaseolus vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1165.6 630 91.4
Actinidia06301 Actinidia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1165.2 633 91.5
Cc01_g02770 Coffea canephora HOM05D004629 ORTHO05D006604 0.0e+00 1165.2 635 90.7
Cfa009633 Carpinus fangiana HOM05D004629 ORTHO05D006604 0.0e+00 1164.1 633 91.2
RcHm_v2.0_Chr5g0081161 Rosa chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1163.7 633 90.8
Glyma.20G243700 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1162.9 630 91.4
QL01p010068 Quercus lobata HOM05D004629 ORTHO05D006604 0.0e+00 1162.1 632 90.8
Rhsim01G0186400 Rhododendron simsii HOM05D004629 ORTHO05D006604 0.0e+00 1162.1 633 91.0
FAN11G0302 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1161.7 633 90.7
Thecc.10G155600 Theobroma cacao HOM05D004629 ORTHO05D006604 0.0e+00 1159.8 630 91.3
Ciclev10014585m.g Citrus clementina HOM05D004629 ORTHO05D006604 0.0e+00 1159.1 633 90.0
Haze_23000 Corylus avellana HOM05D004629 ORTHO05D006604 0.0e+00 1157.9 628 91.1
Duzib128G1447 Durio zibethinus HOM05D004629 ORTHO05D006604 0.0e+00 1157.9 630 90.8
Sabra03G0160400 Salix brachista HOM05D004629 ORTHO05D006604 0.0e+00 1157.9 643 89.6
MBI13_g20490_MAGBIO Magnolia biondii HOM05D004629 ORTHO05D006604 0.0e+00 1156.7 633 90.0
CANSAT11G0664 Cannabis sativa HOM05D004629 ORTHO05D006604 0.0e+00 1156.0 633 90.0
FAN25G1401 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1156.0 633 90.2
Manes.03G089535 Manihot esculenta HOM05D004629 ORTHO05D006604 0.0e+00 1156.0 633 89.9
Glyma.10G293800 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1154.8 630 90.8
Atru.chr3.2163_Atru.chr3.2169 Acer truncatum HOM05D004629 ORTHO05D006604 0.0e+00 1154.4 627 90.9
Lj5g0025778 Lotus japonicus HOM05D004629 ORTHO05D006604 0.0e+00 1153.3 633 90.2
PGR119G2006 Punica granatum HOM05D004629 ORTHO05D006604 0.0e+00 1153.3 635 89.8
arahy.Tifrunner.gnm1.ann1.MLY2RP Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1152.5 633 90.2
FAN16G0373 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1151.7 631 90.2
Lalb_Chr06g0164051 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1151.3 633 89.7
Eucgr.B02610 Eucalyptus grandis HOM05D004629 ORTHO05D006604 0.0e+00 1150.2 633 89.9
Ca_11347_v3 Cicer arietinum L. HOM05D004629 ORTHO05D006604 0.0e+00 1149.4 632 89.7
arahy.Tifrunner.gnm1.ann1.XFL7KU Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1149.0 633 89.9
Nitab4.5_0005132g0060 Nicotiana tabacum HOM05D004629 ORTHO05D006604 0.0e+00 1149.0 635 88.8
EL10Ac4g10337 Beta vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1148.7 633 89.4
TWI60G1346 Tripterygium wilfordii HOM05D004629 ORTHO05D006604 0.0e+00 1148.7 633 89.6
CsaV3_1G042270 Cucumis sativus L. HOM05D004629 ORTHO05D006604 0.0e+00 1146.7 633 89.4
Sopen01g002270 Solanum pennellii HOM05D004629 ORTHO05D006604 0.0e+00 1146.7 635 89.1
Solyc01g006280.3 Solanum lycopersicum HOM05D004629 ORTHO05D006604 0.0e+00 1146.3 635 89.1
PGSC0003DMG400032146 Solanum tuberosum HOM05D004629 ORTHO05D006604 0.0e+00 1146.0 635 88.8
AL1G58130 Arabidopsis lyrata HOM05D004629 ORTHO05D006604 0.0e+00 1145.6 635 88.5
MELO3C015653.2 Cucumis melo HOM05D004629 ORTHO05D006604 0.0e+00 1144.8 627 90.0
Thhalv10011315m.g Eutrema salsugineum HOM05D004629 ORTHO05D006604 0.0e+00 1144.0 631 88.9
Medtr1g116140 Medicago truncatula HOM05D004629 ORTHO05D006604 0.0e+00 1142.9 632 89.1
Sed0008832 Sechium edule HOM05D004629 ORTHO05D006604 0.0e+00 1142.5 633 89.1
AT1G50480 Arabidopsis thaliana HOM05D004629 ORTHO05D006604 0.0e+00 1142.1 635 88.0
Sc09g0000300 Simmondsia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1142.1 633 89.3
TPR.G10403 Trifolium pratense HOM05D004629 ORTHO05D006604 0.0e+00 1142.1 632 89.2
Carub.0001s3955 Capsella rubella HOM05D004629 ORTHO05D006604 0.0e+00 1140.9 631 88.6
CARHR040480 Cardamine hirsuta HOM05D004629 ORTHO05D006604 0.0e+00 1140.6 631 88.7
Peaxi162Scf00192g00022 Petunia axillaris HOM05D004629 ORTHO05D006604 0.0e+00 1140.6 630 89.4
PSO384G3664 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1139.8 633 88.9
Ah.04g161630 Amaranthus hybridus HOM05D004629 ORTHO05D006604 0.0e+00 1139.4 632 88.9
ClCG03G013940 Citrullus lanatus HOM05D004629 ORTHO05D006604 0.0e+00 1137.5 633 89.3
Lalb_Chr02g0143781 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1137.5 630 88.9
PSO339G6259 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1136.7 633 88.6
DCAR_024372 Daucus carota HOM05D004629 ORTHO05D006604 0.0e+00 1135.9 630 89.4
Gohir.A05G400500 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1135.9 630 89.2
BcaB07g33484 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1135.2 631 88.3
BcaC08g43218 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1135.2 631 88.6
C06p05660 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1135.2 631 88.6
BolC6t35677H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1135.2 631 88.6
Gorai.012G017900 Gossypium raimondii HOM05D004629 ORTHO05D006604 0.0e+00 1134.8 630 89.2
BraA06t23523Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1134.0 631 88.6
Sp1g37320 Schrenkiella parvula HOM05D004629 ORTHO05D006604 0.0e+00 1134.0 631 88.3
Aa31LG10G3810 Aethionema arabicum HOM05D004629 ORTHO05D006604 0.0e+00 1133.2 631 88.3
HanXRQChr07g0196791 Helianthus annuus HOM05D004629 ORTHO05D006604 0.0e+00 1133.2 631 89.4
Hund21652 Selenicereus undatus HOM05D004629 ORTHO05D006604 0.0e+00 1133.2 633 88.2
AUR62000039 Chenopodium quinoa HOM05D004629 ORTHO05D006604 0.0e+00 1132.9 660 86.1
Gohir.D04G015400 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1132.9 630 89.0
A06p03100 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1132.5 631 88.4
THA.LOC104806618 Tarenaya hassleriana HOM05D004629 ORTHO05D006604 0.0e+00 1130.2 631 87.6
CSS0018441 Camellia sinensis var. sinensis HOM05D004629 ORTHO05D006604 0.0e+00 1127.9 630 89.5
TAR369G0186 Trochodendron aralioides HOM05D004629 ORTHO05D006604 0.0e+00 1127.5 628 89.3
ECA238G3810 Erigeron canadensis HOM05D004629 ORTHO05D006604 0.0e+00 1125.9 631 88.4
Aqoxy2G00099 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 0.0e+00 1122.1 633 88.2
Lsat_1_v5_gn_2_101421 Lactuca sativa HOM05D004629 ORTHO05D006604 0.0e+00 1120.9 631 88.0
BcaB02g11151 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1119.8 635 86.0
CAN.G140.2 Capsicum annuum HOM05D004629 ORTHO05D006604 0.0e+00 1117.4 635 87.2
BolC5t32091H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1116.3 635 86.0
BraA05t20921Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1115.1 631 86.4
ATR0598G234 Amborella trichopoda HOM05D004629 ORTHO05D006604 0.0e+00 1112.8 630 86.8
BcaC05g27413 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1112.4 635 86.0
A05p20130 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1112.1 631 86.1
Medtr5g059390 Medicago truncatula HOM05D004629 ORTHO05D006604 0.0e+00 1105.5 632 87.0
HPP92_005763 Vanilla planifolia HOM05D004629 ORTHO05D006604 0.0e+00 1104.4 633 85.9
Zm00001eb314490 Zea mays HOM05D004629 ORTHO05D006604 0.0e+00 1104.0 630 86.7
Os09g0446800 Oryza sativa ssp. japonica HOM05D004629 ORTHO05D006604 0.0e+00 1099.0 630 85.9
C05p33610 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1087.8 635 84.4
Ciclev10014598m.g Citrus clementina HOM05D004629 ORTHO05D006604 0.0e+00 1078.5 643 84.9
ECA248G3511 Erigeron canadensis HOM05D004629 ORTHO05D006604 8.7e-312 1072.8 635 83.0
HanXRQChr11g0344961 Helianthus annuus HOM05D004629 ORTHO05D006604 8.7e-312 1072.8 628 84.2
Lsat_1_v5_gn_1_68420 Lactuca sativa HOM05D004629 ORTHO05D006604 3.3e-310 1067.8 628 82.8
Nitab4.5_0008074g0010 Nicotiana tabacum HOM05D004629 ORTHO05D006604 7.6e-307 1056.6 582 88.8
Pp3c15_21130 Physcomitrium patens HOM05D004629 ORTHO05D006604 4.5e-299 1030.8 635 80.0
Mapoly0009s0223 Marchantia polymorpha HOM05D004629 ORTHO05D006604 6.4e-290 1000.3 633 77.7
Nn7g35984 Nelumbo nucifera HOM05D004629 ORTHO05D006604 8.1e-285 983.4 540 90.4
Lj2A677T24 Lonicera japonica HOM05D004629 ORTHO05D006604 3.1e-284 981.5 534 90.8
AUR62019209 Chenopodium quinoa HOM05D004629 ORTHO05D006604 1.0e-282 976.5 534 90.1
CBR_g29353 Chara braunii HOM05D004629 ORTHO05D006604 1.1e-273 946.4 648 74.1
Psat6g238880 Pisum sativum HOM05D004629 ORTHO05D006604 1.1e-265 919.8 632 74.4
Cre13.g566000 Chlamydomonas reinhardtii HOM05D004629 ORTHO05D006604 2.1e-264 915.6 629 72.5
FvH4_3g44470 Fragaria vesca HOM05D004629 ORTHO05D006604 2.6e-262 908.7 495 90.1
SMO364G0493 Selaginella moellendorffii HOM05D004629 ORTHO05D006604 2.4e-260 902.1 644 71.7
Oeu046515.2 Olea europaea HOM05D004629 ORTHO05D006604 9.1e-252 873.6 635 73.7
vmacro16237 Vaccinium macrocarpon HOM05D004629 ORTHO05D006604 1.0e-250 870.2 503 87.3
Cfa009637 Carpinus fangiana HOM05D004629 ORTHO05D006604 5.7e-246 854.4 503 85.3
GSVIVG01025376001 Vitis vinifera HOM05D004629 ORTHO05D006604 2.6e-238 828.9 633 70.1
AagrBONN_evm.TU.Sc2ySwM_117.3293 Anthoceros agrestis HOM05D004629 ORTHO05D006604 4.2e-233 811.6 499 81.0
MCO09G252 Micromonas commoda HOM05D004629 ORTHO05D006604 8.0e-232 807.4 636 64.8
Cfa022255 Carpinus fangiana HOM05D004629 ORTHO05D006604 3.0e-223 778.9 638 61.4
unitig_22.g5473 Utricularia gibba HOM05D004629 ORTHO05D006604 3.6e-208 728.8 444 83.3
CDE05G3086 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 8.7e-194 681.0 535 69.2
Haze_26090 Corylus avellana HOM05D004629 ORTHO05D006604 1.2e-182 644.0 638 53.6
CDE05G1958 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 6.7e-178 628.2 446 73.8
CDE05G1726 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 1.3e-176 624.0 354 87.6
CDE05G0953 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 1.0e-165 587.8 407 75.4
Cpa.g.sc119.97 Carica papaya HOM05D004629 ORTHO05D006604 2.2e-157 560.1 311 89.1
Glyma.10G112700 Glycine max HOM05D004629 ORTHO05D006604 1.8e-146 523.9 289 89.3
BcaB02g11149 Brassica carinata HOM05D004629 ORTHO05D006604 9.7e-137 491.5 272 89.0
PRCOL_00001239 Prasinoderma coloniale HOM05D004629 ORTHO05D006604 6.8e-114 415.6 527 42.9
Actinidia39366 Actinidia chinensis HOM05D004629 ORTHO05D006604 4.0e-98 363.2 197 90.9
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 2.4e-87 327.4 236 70.8
CDE05G0143 Ceratophyllum demersum HOM05D004629 ORTHO05D019743 1.2e-83 315.1 231 70.1
Aqoxy5G02405 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 3.6e-83 313.5 181 86.2
Psat2g086520 Pisum sativum HOM05D004629 ORTHO05D006604 1.5e-76 291.6 162 87.0
Nn2g15715 Nelumbo nucifera HOM05D004629 ORTHO05D019743 2.4e-74 284.3 633 34.4
DCAR_017261 Daucus carota HOM05D004629 ORTHO05D006604 6.9e-74 282.7 163 85.3
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 5.3e-58 229.9 273 49.5
Sabra01G0008400 Salix brachista HOM05D004629 ORTHO05D023587 1.6e-54 218.4 229 57.2
Lj2A677G23 Lonicera japonica HOM05D004629 ORTHO05D006604 5.1e-45 186.8 101 91.1
Psat3g007720 Pisum sativum HOM05D004629 ORTHO05D006604 1.1e-39 169.1 99 84.8
Aqoxy3G01857 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 9.4e-39 166.0 101 80.2
Psat1g079640 Pisum sativum HOM05D004629 ORTHO05D023587 6.1e-38 163.3 104 75.0
Aqoxy5G02400 Aquilegia oxysepala HOM05D004629 ORTHO05D023587 8.8e-37 159.5 90 87.8
Nn7g35985 Nelumbo nucifera HOM05D004629 ORTHO05D019743 8.8e-37 159.5 86 87.2
unitig_22.g5472 Utricularia gibba HOM05D004629 ORTHO05D006604 3.3e-36 157.5 127 66.9
Thecc.10G098800 Theobroma cacao HOM05D004629 ORTHO05D006604 9.7e-36 156.0 154 59.7
Psat4g081680 Pisum sativum HOM05D004629 ORTHO05D019743 5.3e-34 150.2 91 82.4
Psat4g081640 Pisum sativum HOM05D004629 ORTHO05D019743 9.1e-34 149.4 91 81.3
AT2G12280 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 6.5e-32 143.3 74 87.8
Haze_27099 Corylus avellana HOM05D004629 ORTHO05D006604 1.4e-21 109.0 116 53.4
BcaB02g11150 Brassica carinata HOM05D004629 ORTHO05D092705 5.7e-20 103.6 53 94.3
CAN.G8813.1 Capsicum annuum HOM05D004629 ORTHO05D006604 3.7e-19 100.9 72 69.4
Psat4g161960 Pisum sativum HOM05D001026 ORTHO05D007776 1.2e-17 95.9 109 54.1
AT2G12200 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 3.5e-17 94.4 63 69.8
DCAR_026904 Daucus carota HOM05D004629 ORTHO05D023587 1.7e-16 92.0 51 84.3
Nn1g06900 Nelumbo nucifera HOM05D004629 ORTHO05D023587 1.7e-16 92.0 49 87.8
Aqoxy2G02051 Aquilegia oxysepala HOM05D004629 ORTHO05D004559 1.2e-12 79.3 56 66.1
ECA248G2032 Erigeron canadensis HOM05D004629 ORTHO05D189049 1.6e-09 68.9 43 74.4


User provided reference genes

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