Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.17382 Avicennia marina HOM05D004392 ORTHO05D004846 0.0e+00 3837.0 1945 100.0
Migut.B01921 Erythranthe guttata HOM05D004392 ORTHO05D004846 0.0e+00 2659.0 1957 71.8
SalBow3G1181 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 2358.2 1949 65.7
SGA_v2.0_scaffold98G29423 Striga asiatica HOM05D004392 ORTHO05D004846 0.0e+00 2328.5 1955 64.6
SalBow3G3735 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 2259.2 1949 63.9
Oeu028215.3 Olea europaea HOM05D004392 ORTHO05D004846 0.0e+00 2201.8 1982 61.3
GSVIVG01027438001 Vitis vinifera HOM05D004392 ORTHO05D004846 0.0e+00 1981.1 1997 55.6
Cc02_g39950 Coffea canephora HOM05D004392 ORTHO05D004846 0.0e+00 1946.8 1592 62.3
Rhsim07G0000300 Rhododendron simsii HOM05D004392 ORTHO05D004846 0.0e+00 1926.0 1961 54.5
Atru.chr5.766 Acer truncatum HOM05D004392 ORTHO05D004846 0.0e+00 1901.3 2018 52.6
Hma1.2p1_0074F.1_g038710 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 0.0e+00 1899.0 1616 60.6
Potri.014G105601 Populus trichocarpa HOM05D004392 ORTHO05D004846 0.0e+00 1897.1 1990 53.4
Lj9C607G8 Lonicera japonica HOM05D004392 ORTHO05D004846 0.0e+00 1895.6 1934 54.9
Manes.01G240000 Manihot esculenta HOM05D004392 ORTHO05D004846 0.0e+00 1885.9 2013 52.7
CSS0009785 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 1880.9 1544 62.2
Ciclev10018449m.g Citrus clementina HOM05D004392 ORTHO05D004846 0.0e+00 1876.7 1989 52.6
TWI59G0442 Tripterygium wilfordii HOM05D004392 ORTHO05D004846 0.0e+00 1876.7 2009 53.0
Sabra14G0077700 Salix brachista HOM05D004392 ORTHO05D004846 0.0e+00 1872.1 1981 52.8
Thecc.01G333400 Theobroma cacao HOM05D004392 ORTHO05D004846 0.0e+00 1870.1 2002 52.4
Actinidia08006 Actinidia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 1869.4 1540 62.0
Gohir.D12G120100 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 1869.0 2017 52.5
Gorai.008G130800 Gossypium raimondii HOM05D004392 ORTHO05D004846 0.0e+00 1869.0 1994 52.5
Cfa003736 Carpinus fangiana HOM05D004392 ORTHO05D004846 0.0e+00 1867.8 1963 53.6
Gohir.A12G116600 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 1866.7 1994 52.5
Sopen05g026910 Solanum pennellii HOM05D004392 ORTHO05D004846 0.0e+00 1866.3 1854 54.2
Solyc05g044610.3 Solanum lycopersicum HOM05D004392 ORTHO05D004846 0.0e+00 1854.7 1848 53.6
QL08p047226 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 1853.6 1973 52.5
Peaxi162Scf00462g00512 Petunia axillaris HOM05D004392 ORTHO05D004846 0.0e+00 1825.8 2000 51.6
Haze_15733 Corylus avellana HOM05D004392 ORTHO05D004846 0.0e+00 1824.7 2137 49.6
Prupe.2G197500 Prunus persica HOM05D004392 ORTHO05D004846 0.0e+00 1823.9 1993 51.8
CAN.G929.34 Capsicum annuum HOM05D004392 ORTHO05D004846 0.0e+00 1822.0 1850 53.5
CiPaw.01G082300 Carya illinoinensis HOM05D004392 ORTHO05D004846 0.0e+00 1803.5 1997 50.8
MD07G1159400 Malus domestica HOM05D004392 ORTHO05D004846 0.0e+00 1802.3 1981 51.8
Nitab4.5_0000006g0150 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1798.1 1868 53.2
TAR636G2848 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 1794.2 2015 51.1
Eucgr.D02650 Eucalyptus grandis HOM05D004392 ORTHO05D004846 0.0e+00 1772.7 1871 52.3
PGR031G1055 Punica granatum HOM05D004392 ORTHO05D004846 0.0e+00 1772.7 2013 49.8
FAN06G0296 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1771.9 1955 51.3
FvH4_7g17640 Fragaria vesca HOM05D004392 ORTHO05D004846 0.0e+00 1763.8 1955 51.4
Lj3g0000602 Lotus japonicus HOM05D004392 ORTHO05D004846 0.0e+00 1761.1 1873 52.1
FAN06G0139 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1760.3 1955 51.4
COL.COLO4_23048 Corchorus olitorius HOM05D004392 ORTHO05D004846 0.0e+00 1756.1 1959 51.6
Sc01g0002200 Simmondsia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 1751.9 1983 49.9
Lsat_1_v5_gn_3_140700 Lactuca sativa HOM05D004392 ORTHO05D004846 0.0e+00 1747.6 1935 51.4
Phvul.010G119400 Phaseolus vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 1746.9 1987 49.6
FAN03G2506 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1740.3 1978 50.4
RcHm_v2.0_Chr1g0361071 Rosa chinensis HOM05D004392 ORTHO05D004846 0.0e+00 1738.8 1990 50.7
MBI12_g11801_MAGBIO Magnolia biondii HOM05D004392 ORTHO05D004846 0.0e+00 1737.6 2018 49.4
arahy.Tifrunner.gnm1.ann1.9PW2R5 Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 1729.1 2002 49.9
FAN10G3859 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1728.0 1983 50.2
Glyma.07G049700 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 1728.0 1964 50.2
Glyma.16G018400 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 1726.8 1970 50.3
FAN10G1489 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1721.8 1982 50.0
arahy.Tifrunner.gnm1.ann1.H04KSL Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 1721.4 1894 51.3
Ca_26063_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 0.0e+00 1720.7 1882 51.6
TPR.G19826 Trifolium pratense HOM05D004392 ORTHO05D004846 0.0e+00 1714.1 1881 51.2
HanXRQChr11g0352941 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1713.4 1884 52.3
HanXRQChr11g0352951 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1713.4 1884 52.3
Nitab4.5_0011074g0010 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1711.0 1840 51.2
Lalb_Chr10g0100861 Lupinus albus HOM05D004392 ORTHO05D004846 0.0e+00 1710.7 1915 51.1
CsaV3_3G007340 Cucumis sativus L. HOM05D004392 ORTHO05D004846 0.0e+00 1703.7 1979 49.3
FAN01G0919 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 1696.0 1988 49.6
Duzib138G1478 Durio zibethinus HOM05D004392 ORTHO05D004846 0.0e+00 1694.5 2000 49.2
THA.LOC104801349 Tarenaya hassleriana HOM05D004392 ORTHO05D004846 0.0e+00 1691.0 2027 48.7
ECA233G3878 Erigeron canadensis HOM05D004392 ORTHO05D004846 0.0e+00 1689.1 1974 49.8
Medtr8g024320 Medicago truncatula HOM05D004392 ORTHO05D004846 0.0e+00 1688.3 1867 50.8
Psat4g164000 Pisum sativum HOM05D004392 ORTHO05D004846 0.0e+00 1687.5 1898 50.6
VMungo0331G0990 Vigna mungo HOM05D004392 ORTHO05D004846 0.0e+00 1684.1 2008 48.5
Hund27149 Selenicereus undatus HOM05D004392 ORTHO05D004846 0.0e+00 1676.8 2099 47.7
Aqoxy5G04345 Aquilegia oxysepala HOM05D004392 ORTHO05D004846 0.0e+00 1669.1 1991 49.0
PSO063G6286 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1655.2 2039 48.7
DCAR_013954 Daucus carota HOM05D004392 ORTHO05D004846 0.0e+00 1642.1 1769 52.0
PSO782G2296 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1640.2 2008 48.6
Nn3g18803 Nelumbo nucifera HOM05D004392 ORTHO05D004846 0.0e+00 1639.4 1471 58.0
Thhalv10028358m.g Eutrema salsugineum HOM05D004392 ORTHO05D004846 0.0e+00 1633.2 2024 48.0
Dinv34257 Davidia involucrata HOM05D004392 ORTHO05D004846 0.0e+00 1632.5 1707 54.7
BolC9t53041H Brassica oleracea HOM05D004392 ORTHO05D004846 0.0e+00 1627.5 1898 49.2
C09p01080 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1622.4 1899 49.1
BcaC04g24098 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1620.9 1914 49.1
A09p00990 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1615.1 1895 48.7
CSS0004566 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 1613.6 1332 61.7
Sp6g01320 Schrenkiella parvula HOM05D004392 ORTHO05D004846 0.0e+00 1612.8 2007 47.6
AUR62004560 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 1609.7 1985 48.1
Aa31LG5G1150 Aethionema arabicum HOM05D004392 ORTHO05D004846 0.0e+00 1609.3 2005 47.6
AUR62022676 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 1608.6 2001 47.6
BraA09t35770Z Brassica rapa HOM05D004392 ORTHO05D004846 0.0e+00 1607.4 1864 49.1
Carub.0006s3583 Capsella rubella HOM05D004392 ORTHO05D004846 0.0e+00 1606.3 2018 47.4
Ah.05g178970 Amaranthus hybridus HOM05D004392 ORTHO05D004846 0.0e+00 1597.0 1963 48.8
Sed0010760 Sechium edule HOM05D004392 ORTHO05D004846 0.0e+00 1595.1 1701 51.4
AT4G00800 Arabidopsis thaliana HOM05D004392 ORTHO05D004846 0.0e+00 1594.7 1987 47.2
AL6G52660 Arabidopsis lyrata HOM05D004392 ORTHO05D004846 0.0e+00 1593.9 1992 47.3
ClCG05G000190 Citrullus lanatus HOM05D004392 ORTHO05D004846 0.0e+00 1576.6 1888 48.1
CDE02G2120 Ceratophyllum demersum HOM05D004392 ORTHO05D004846 0.0e+00 1575.1 1951 47.2
BcaB01g02315 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1566.2 1989 46.9
EL10Ac1g00187 Beta vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 1562.4 2071 45.9
MELO3C005953.2 Cucumis melo HOM05D004392 ORTHO05D004846 0.0e+00 1546.9 2114 45.0
TAR629G2483 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 1439.5 1248 60.0
ATR0304G014 Amborella trichopoda HOM05D004392 ORTHO05D004846 0.0e+00 1407.1 1477 51.7
Zm00001eb230740 Zea mays HOM05D004392 ORTHO05D004846 0.0e+00 1382.9 1990 41.5
unitig_736.g22806 Utricularia gibba HOM05D004392 ORTHO05D004846 0.0e+00 1343.6 1951 43.7
QL10p065016 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 1194.1 1109 57.2
CAN.G1674.1 Capsicum annuum HOM05D004392 ORTHO05D004846 4.7e-307 1058.9 1846 39.3
vmacro00026 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 2.6e-281 973.4 1131 51.1
SMO114G0120 Selaginella moellendorffii HOM05D004392 ORTHO05D004846 4.3e-276 956.1 1911 34.9
Mapoly0063s0095 Marchantia polymorpha HOM05D004392 ORTHO05D004846 1.4e-274 951.0 2086 33.1
CARHR249530 Cardamine hirsuta HOM05D004392 ORTHO05D004846 1.5e-268 931.0 959 53.0
AagrBONN_evm.TU.Sc2ySwM_368.256 Anthoceros agrestis HOM05D004392 ORTHO05D004846 2.9e-264 916.8 2060 33.0
Pp3c17_2710 Physcomitrium patens HOM05D004392 ORTHO05D004846 1.7e-261 907.5 1697 35.3
vmacro00027 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 3.2e-255 886.7 892 52.8
SHI29621 Sapria himalayana HOM05D004392 ORTHO05D004846 1.6e-230 804.7 1174 42.8
Hma1.2p1_0074F.1_g038700 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 2.8e-219 767.3 957 48.7
Cpa.g.sc193.6 Carica papaya HOM05D004392 ORTHO05D004846 4.8e-211 740.0 1101 42.9
SEGI_06399 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 9.4e-207 725.7 1049 41.5
Pp3c7_20800 Physcomitrium patens HOM05D004392 ORTHO05D004846 5.5e-199 699.9 1448 32.9
HPP92_014634 Vanilla planifolia HOM05D004392 ORTHO05D004846 1.1e-196 692.2 1126 40.9
CAN.G929.33 Capsicum annuum HOM05D004392 ORTHO05D004846 5.3e-194 683.3 1161 38.4
CBR_g34692 Chara braunii HOM05D004392 ORTHO05D004846 2.5e-191 674.5 1788 28.6
Hma1.2p1_0074F.1_g038720 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 8.3e-187 659.4 578 58.3
CAN.G929.32 Capsicum annuum HOM05D004392 ORTHO05D004846 1.2e-166 592.4 832 43.8
Cpa.g.sc193.10 Carica papaya HOM05D004392 ORTHO05D004846 3.2e-146 524.6 542 53.5
QL10p065024 Quercus lobata HOM05D004392 ORTHO05D004846 5.1e-144 517.3 473 57.3
SEGI_29076 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 1.2e-132 479.6 670 42.2
HPP92_014635 Vanilla planifolia HOM05D004392 ORTHO05D004846 5.6e-127 460.7 553 46.8
SEGI_11710 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 4.5e-124 451.1 572 44.1
Os02g0124700 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 2.9e-123 448.4 571 43.3
TAR629G0818 Trochodendron aralioides HOM05D004392 ORTHO05D004846 1.0e-91 343.6 755 35.9
HanXRQChr14g0445111 Helianthus annuus HOM05D004392 ORTHO05D004846 3.2e-90 338.6 280 61.4
Cc06_g21290 Coffea canephora HOM05D004392 ORTHO05D004846 4.1e-77 295.0 462 40.9
Cc00_g18720 Coffea canephora HOM05D004392 ORTHO05D004846 9.8e-63 247.3 228 54.8
SHI29617 Sapria himalayana HOM05D004392 ORTHO05D004846 6.6e-59 234.6 393 39.2
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 9.8e-55 220.7 363 36.1
Mapoly0036s0138 Marchantia polymorpha HOM05D004392 ORTHO05D004846 1.0e-43 184.1 296 37.2
Cc00_g00890 Coffea canephora HOM05D004392 ORTHO05D004846 4.3e-42 178.7 342 37.4
ATR0304G056 Amborella trichopoda HOM05D004392 ORTHO05D004846 1.4e-40 173.7 470 34.0
Cc05_g02700 Coffea canephora HOM05D004392 ORTHO05D004846 1.4e-40 173.7 183 51.4
SEGI_35470 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 5.2e-40 171.8 228 42.1
Cfa022536 Carpinus fangiana HOM05D004392 ORTHO05D004846 9.8e-39 167.5 1193 21.0
Cc08_g08700 Coffea canephora HOM05D004392 ORTHO05D004846 1.3e-35 157.1 163 50.3
Cc00_g21570 Coffea canephora HOM05D004392 ORTHO05D004846 3.6e-33 149.1 159 50.3
BcaB01g02314 Brassica carinata HOM05D004392 ORTHO05D004846 2.3e-32 146.4 655 27.5
Cc07_g19980 Coffea canephora HOM05D004392 ORTHO05D004846 6.8e-32 144.8 165 46.7
Lsat_1_v5_gn_7_90420 Lactuca sativa HOM05D004392 ORTHO05D004846 2.6e-31 142.9 211 40.8
Psat3g193680 Pisum sativum HOM05D003463 ORTHO05D030491 1.1e-29 137.5 135 48.9
HanXRQChr14g0436131 Helianthus annuus HOM05D004392 ORTHO05D004846 7.1e-29 134.8 124 55.6
Nitab4.5_0002816g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 6.0e-28 131.7 122 55.7
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 8.9e-24 117.9 113 51.3
Ca_09729_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 9.9e-23 114.4 80 66.2
arahy.Tifrunner.gnm1.ann1.IVU47Y Arachis hypogaea HOM05D004392 ORTHO05D004846 1.7e-22 113.6 140 49.3
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 2.3e-19 103.2 94 54.3
Cre13.g606350 Chlamydomonas reinhardtii HOM05D004392 ORTHO05D004846 3.0e-19 102.8 322 27.6
Psat0s2140g0040 Pisum sativum HOM05D004392 ORTHO05D004846 1.2e-15 90.9 83 59.0
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 9.9e-15 87.8 56 66.1
Cc00_g33390 Coffea canephora HOM05D004392 ORTHO05D004846 6.4e-14 85.1 52 78.8
Psat0s3706g0080 Pisum sativum HOM05D004392 ORTHO05D004846 6.0e-12 78.6 151 39.1
Os10g0182300 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 2.5e-10 73.2 73 49.3
RcHm_v2.0_Chr1g0361181 Rosa chinensis HOM05D004392 ORTHO05D004846 1.3e-09 70.9 97 40.2
Psat0s2975g0200 Pisum sativum HOM05D000832 ORTHO05D019229 5.3e-08 65.5 149 36.9
Psat3g157320 Pisum sativum HOM05D004392 ORTHO05D004846 2.6e-07 63.2 183 31.7
Ah.07g200480 Amaranthus hybridus HOM05D004392 ORTHO05D004846 4.9e-06 58.9 72 44.4


User provided reference genes

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