Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.17350 Avicennia marina HOM05D001889 ORTHO05D001853 9.1e-62 240.0 113 100.0
Migut.B01883 Erythranthe guttata HOM05D001889 ORTHO05D001853 4.3e-27 124.8 108 56.5
SGA_v2.0_scaffold5G03026 Striga asiatica HOM05D001889 ORTHO05D001853 8.9e-25 117.1 111 53.2
Peaxi162Scf00716g00029 Petunia axillaris HOM05D001889 ORTHO05D000001 1.3e-23 113.2 112 48.2
Cc02_g39460 Coffea canephora HOM05D001889 ORTHO05D001853 1.6e-21 106.3 112 43.8
Dinv32598 Davidia involucrata HOM05D001889 ORTHO05D000001 2.0e-21 105.9 127 42.5
Nitab4.5_0000258g0190 Nicotiana tabacum HOM05D001889 ORTHO05D001853 3.9e-20 101.7 113 44.2
Nitab4.5_0004506g0040 Nicotiana tabacum HOM05D001889 ORTHO05D001853 3.3e-19 98.6 113 41.6
CSS0024595 Camellia sinensis var. sinensis HOM05D001889 ORTHO05D001853 9.5e-19 97.1 109 46.8
ECA236G4907 Erigeron canadensis HOM05D001889 ORTHO05D001853 6.4e-15 84.3 100 44.0
Potri.002G171900 Populus trichocarpa HOM05D001889 ORTHO05D001853 6.4e-15 84.3 121 38.8
Sabra02G0140800 Salix brachista HOM05D001889 ORTHO05D001853 8.3e-15 84.0 124 36.3
DCAR_005395 Daucus carota HOM05D001889 ORTHO05D001853 1.1e-14 83.6 102 44.1
Rhsim01G0173800 Rhododendron simsii HOM05D001889 ORTHO05D000001 1.9e-14 82.8 124 37.1
Haze_15668 Corylus avellana HOM05D001889 ORTHO05D001853 3.2e-14 82.0 120 36.7
Cfa003792 Carpinus fangiana HOM05D001889 ORTHO05D001853 5.4e-14 81.3 120 36.7
CANSAT56G4277 Cannabis sativa HOM05D001889 ORTHO05D001853 1.2e-13 80.1 114 34.2
Manes.05G022100 Manihot esculenta HOM05D001889 ORTHO05D001853 1.2e-13 80.1 121 35.5
HanXRQChr06g0170781 Helianthus annuus HOM05D001889 ORTHO05D001853 1.6e-13 79.7 103 39.8
Atru.chr5.680 Acer truncatum HOM05D001889 ORTHO05D001853 2.7e-13 79.0 123 32.5
Psat0s1094g0080 Pisum sativum HOM05D001889 ORTHO05D001853 3.5e-13 78.6 113 39.8
ClCG05G000760 Citrullus lanatus HOM05D001889 ORTHO05D000001 6.0e-13 77.8 126 34.9
arahy.Tifrunner.gnm1.ann1.QJF382 Arachis hypogaea HOM05D001889 ORTHO05D001853 1.0e-12 77.0 111 34.2
Ciclev10020119m.g Citrus clementina HOM05D001889 ORTHO05D001853 1.3e-12 76.6 116 36.2
Eucgr.E00048 Eucalyptus grandis HOM05D001889 ORTHO05D001853 1.3e-12 76.6 118 34.7
arahy.Tifrunner.gnm1.ann1.JQ1PN1 Arachis hypogaea HOM05D001889 ORTHO05D001853 1.7e-12 76.3 113 34.5
Psat3g002280 Pisum sativum HOM05D001889 ORTHO05D001853 2.3e-12 75.9 113 38.9
C09p00940 Brassica napus HOM05D001889 ORTHO05D001853 3.0e-12 75.5 124 36.3
BolC9t53028H Brassica oleracea HOM05D001889 ORTHO05D001853 3.0e-12 75.5 124 36.3
A09p00300 Brassica napus HOM05D001889 ORTHO05D001853 3.9e-12 75.1 124 36.3
Aa31LG5G980 Aethionema arabicum HOM05D001889 ORTHO05D001853 8.6e-12 73.9 129 35.7
QL04p060477 Quercus lobata HOM05D001889 ORTHO05D001853 1.1e-11 73.6 115 34.8
Gorai.007G109200 Gossypium raimondii HOM05D001889 ORTHO05D001853 1.5e-11 73.2 121 37.2
Nitab4.5_0004281g0020 Nicotiana tabacum HOM05D001889 ORTHO05D001853 1.9e-11 72.8 112 34.8
COL.COLO4_06276 Corchorus olitorius HOM05D001889 ORTHO05D001853 2.5e-11 72.4 122 35.2
Thhalv10029236m.g Eutrema salsugineum HOM05D001889 ORTHO05D001853 2.5e-11 72.4 118 35.6
BraA09t35757Z Brassica rapa HOM05D001889 ORTHO05D001853 3.3e-11 72.0 124 35.5
VMungo0540G1992 Vigna mungo HOM05D001889 ORTHO05D001853 3.3e-11 72.0 112 34.8
Cpa.g.sc96.34 Carica papaya HOM05D001889 ORTHO05D001853 5.6e-11 71.2 118 33.1
AL6G52430 Arabidopsis lyrata HOM05D001889 ORTHO05D001853 7.3e-11 70.9 121 33.9
CsaV3_3G007990 Cucumis sativus L. HOM05D001889 ORTHO05D001853 7.3e-11 70.9 125 35.2
Lj1g0012362 Lotus japonicus HOM05D001889 ORTHO05D001853 7.3e-11 70.9 125 31.2
Ah.05g179470 Amaranthus hybridus HOM05D001889 ORTHO05D001853 2.1e-10 69.3 118 33.9
vmacro12666 Vaccinium macrocarpon HOM05D001889 ORTHO05D001853 2.1e-10 69.3 118 33.1
AT4G00980 Arabidopsis thaliana HOM05D001889 ORTHO05D001853 2.8e-10 68.9 121 33.9
Sp6g01170 Schrenkiella parvula HOM05D001889 ORTHO05D001853 4.7e-10 68.2 121 33.9
TPR.G4688 Trifolium pratense HOM05D001889 ORTHO05D001853 4.7e-10 68.2 111 37.8
THA.LOC104801367 Tarenaya hassleriana HOM05D001889 ORTHO05D001853 6.2e-10 67.8 120 32.5
Phvul.006G113800 Phaseolus vulgaris HOM05D001889 ORTHO05D001853 1.1e-09 67.0 113 31.0
Sed0013045 Sechium edule HOM05D001889 ORTHO05D001853 1.1e-09 67.0 121 33.1
MELO3C006017.2 Cucumis melo HOM05D001889 ORTHO05D001853 1.4e-09 66.6 127 32.3
Prupe.2G189900 Prunus persica HOM05D001889 ORTHO05D001853 2.3e-09 65.9 114 33.3
MD01G1082500 Malus domestica HOM05D001889 ORTHO05D001853 5.2e-09 64.7 112 33.9
SHI13113 Sapria himalayana HOM05D001889 ORTHO05D000001 6.8e-09 64.3 110 33.6
Hund27191 Selenicereus undatus HOM05D001889 ORTHO05D001853 1.2e-08 63.5 126 29.4
Glyma.19G256500 Glycine max HOM05D001889 ORTHO05D001853 1.5e-08 63.2 113 31.9
EL10Ac1g00257 Beta vulgaris HOM05D001889 ORTHO05D001853 2.6e-08 62.4 54 48.1
CSS0033224 Camellia sinensis var. sinensis HOM05D000534 ORTHO05D000389 2.6e-08 62.4 105 33.3
AUR62023450 Chenopodium quinoa HOM05D001889 ORTHO05D001853 3.4e-08 62.0 127 30.7
Sc01g0002620 Simmondsia chinensis HOM05D001889 ORTHO05D001853 4.4e-08 61.6 101 33.7
Glyma.03G258000 Glycine max HOM05D001889 ORTHO05D001853 7.5e-08 60.8 114 33.3
RcHm_v2.0_Chr1g0359981 Rosa chinensis HOM05D001889 ORTHO05D001853 1.3e-07 60.1 112 30.4
Sopen10g015690 Solanum pennellii HOM05D000002 ORTHO05D000001 1.3e-07 60.1 124 32.3
AL5G21450 Arabidopsis lyrata HOM05D001889 ORTHO05D000001 2.2e-07 59.3 59 44.1
AL5G21480 Arabidopsis lyrata HOM05D001889 ORTHO05D001853 2.2e-07 59.3 59 44.1
ECA247G3121 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.2e-07 59.3 109 30.3
RcHm_v2.0_Chr2g0151961 Rosa chinensis HOM05D000002 ORTHO05D000001 3.7e-07 58.5 123 32.5
RcHm_v2.0_Chr2g0171331 Rosa chinensis HOM05D000002 ORTHO05D000001 3.7e-07 58.5 123 32.5
Ca_09513_v3 Cicer arietinum L. HOM05D001889 ORTHO05D001853 4.9e-07 58.2 57 47.4
Ca_30063_v3 Cicer arietinum L. HOM05D001889 ORTHO05D001853 4.9e-07 58.2 57 47.4
CSS0024478 Camellia sinensis var. sinensis HOM05D000534 ORTHO05D000389 6.4e-07 57.8 96 35.4
Hma1.2p1_0446F.1_g154575 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 8.3e-07 57.4 110 32.7
Hma1.2p1_0635F.1_g193125 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 8.3e-07 57.4 110 32.7
Hma1.2p1_1323F.1_g275535 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 8.3e-07 57.4 110 32.7
Hma1.2p1_2229F.1_g317545 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 8.3e-07 57.4 110 32.7
Psat3g002320 Pisum sativum HOM05D001889 ORTHO05D001853 8.3e-07 57.4 50 52.0
Prupe.2G187700 Prunus persica HOM05D001889 ORTHO05D001853 8.3e-07 57.4 46 50.0
Sopen01g009470 Solanum pennellii HOM05D000002 ORTHO05D000001 1.4e-06 56.6 124 31.5
Sopen01g031800 Solanum pennellii HOM05D000002 ORTHO05D000001 1.4e-06 56.6 124 31.5
Sopen09g011150 Solanum pennellii HOM05D000002 ORTHO05D000001 1.4e-06 56.6 124 31.5
Sopen09g015540 Solanum pennellii HOM05D000002 ORTHO05D000001 1.4e-06 56.6 124 31.5
Lalb_Chr15g0076301 Lupinus albus HOM05D001889 ORTHO05D001853 2.4e-06 55.8 124 29.8
Hma1.2p1_2002F.1_g310710 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 3.2e-06 55.5 119 31.1
RcHm_v2.0_Chr7g0197111 Rosa chinensis HOM05D000002 ORTHO05D000001 3.2e-06 55.5 114 33.3
Sopen01g049130 Solanum pennellii HOM05D006380 ORTHO05D008400 3.2e-06 55.5 122 32.8
Sopen05g030490 Solanum pennellii HOM05D000002 ORTHO05D000001 3.2e-06 55.5 122 32.8
Sopen08g007360 Solanum pennellii HOM05D000002 ORTHO05D000001 3.2e-06 55.5 122 32.8
FvH4_1g25682 Fragaria vesca HOM05D000002 ORTHO05D000001 4.1e-06 55.1 135 28.9
Nitab4.5_0012992g0010 Nicotiana tabacum HOM05D001889 ORTHO05D001853 4.1e-06 55.1 64 37.5
Sopen03g013960 Solanum pennellii HOM05D000002 ORTHO05D000001 5.4e-06 54.7 113 29.2
ECA232G0336 Erigeron canadensis HOM05D000002 ORTHO05D000001 7.1e-06 54.3 128 27.3
ECA233G1159 Erigeron canadensis HOM05D000002 ORTHO05D000001 7.1e-06 54.3 120 30.0
Sopen04g020390 Solanum pennellii HOM05D000004 ORTHO05D000002 7.1e-06 54.3 110 33.6
Sopen11g011490 Solanum pennellii HOM05D000002 ORTHO05D000001 7.1e-06 54.3 114 33.3
Sopen03g025060 Solanum pennellii HOM05D000002 ORTHO05D000001 9.2e-06 53.9 110 32.7


User provided reference genes

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