Gene: AT4G00980

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G00980
  • Transcript Identifier AT4G00980.1
  • Gene Type Coding gene
  • Location Chr4 : 422732-424580 : negative

Gene Family Information

  • ID HOM05D001889
  • #Genes/#Species 349/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G00980.1
  • uniprot Q8GXX5

Descriptions

  • Description zinc knuckle (CCHC-type) family protein
  • Computational description zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878), DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: transcriptional coactivator p15 (PC4) family protein (KELP) (TAIR:AT4G10920.2); Has 580 Blast hits to 578 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 36; Fungi - 5; Plants - 539; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0060261
ISO
PLAZA Homology (enrichment)positive regulation of transcription initiation from RNA polymerase II promoter HOM05D001889
GO:0006355
ISO
PLAZA Homology (enrichment)regulation of transcription, DNA-templated HOM05D001889

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
Gene Ontologynucleic acid binding
GO:0008270
IEA
Gene Ontologyzinc ion binding
GO:0003677
ISO
PLAZA Homology (enrichment)DNA binding HOM05D001889
GO:0003713
ISO
PLAZA Homology (enrichment)transcription coactivator activity HOM05D001889

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR014876 DEK, C-terminal
Mapman id Description
35.1 not assigned.annotated