Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.17337 Avicennia marina HOM05D004730 ORTHO05D005705 2.7e-291 1004.6 500 100.0
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 2.1e-259 898.7 505 87.5
SalBow3G2618 Salvia bowleyana HOM05D004730 ORTHO05D005705 3.0e-258 894.8 505 87.7
Migut.B01859 Erythranthe guttata HOM05D004730 ORTHO05D005705 3.3e-257 891.3 498 88.0
Nitab4.5_0000258g0150 Nicotiana tabacum HOM05D004730 ORTHO05D005705 3.7e-240 834.7 513 80.5
CAN.G239.1 Capsicum annuum HOM05D004730 ORTHO05D005705 2.4e-239 832.0 509 80.4
Nn1g01877 Nelumbo nucifera HOM05D004730 ORTHO05D005705 1.3e-237 826.2 502 81.3
Oeu015369.3 Olea europaea HOM05D004730 ORTHO05D005705 6.5e-237 823.9 523 78.6
GSVIVG01027092001 Vitis vinifera HOM05D004730 ORTHO05D005705 1.1e-236 823.2 498 82.3
Peaxi162Scf00403g00522 Petunia axillaris HOM05D004730 ORTHO05D005705 3.6e-235 818.1 499 80.8
Lsat_1_v5_gn_3_139961 Lactuca sativa HOM05D004730 ORTHO05D005705 4.7e-235 817.8 503 80.7
Actinidia10133 Actinidia chinensis HOM05D004730 ORTHO05D005705 3.9e-234 814.7 507 81.7
PGSC0003DMG400017986 Solanum tuberosum HOM05D004730 ORTHO05D005705 5.2e-234 814.3 500 79.8
Solyc05g050390.4 Solanum lycopersicum HOM05D004730 ORTHO05D005705 6.7e-234 813.9 501 80.2
DCAR_005384 Daucus carota HOM05D004730 ORTHO05D005705 1.5e-233 812.8 502 79.7
Sopen05g028800 Solanum pennellii HOM05D004730 ORTHO05D005705 2.6e-233 812.0 501 80.0
Cc02_g39260 Coffea canephora HOM05D004730 ORTHO05D005705 7.4e-233 810.4 512 78.7
Nitab4.5_0004506g0070 Nicotiana tabacum HOM05D004730 ORTHO05D005705 8.2e-232 807.0 513 78.6
vmacro13156 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 4.1e-231 804.7 502 79.7
Rhsim07G0004700 Rhododendron simsii HOM05D004730 ORTHO05D005705 1.6e-230 802.7 520 78.1
ECA248G0182 Erigeron canadensis HOM05D004730 ORTHO05D005705 1.4e-226 789.6 501 80.4
unitig_62.g23797 Utricularia gibba HOM05D004730 ORTHO05D005705 2.3e-226 788.9 512 77.1
Ciclev10019746m.g Citrus clementina HOM05D004730 ORTHO05D005705 3.7e-224 781.6 501 78.4
Potri.002G170100 Populus trichocarpa HOM05D004730 ORTHO05D005705 3.7e-224 781.6 497 79.1
MBI06_g08459_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 4.1e-223 778.1 497 78.3
Prupe.2G187200 Prunus persica HOM05D004730 ORTHO05D005705 7.0e-223 777.3 493 80.7
CSS0011474 Camellia sinensis var. sinensis HOM05D004730 ORTHO05D005705 1.2e-222 776.5 504 78.0
Thecc.01G343400 Theobroma cacao HOM05D004730 ORTHO05D005705 1.6e-222 776.2 501 77.6
Lalb_Chr21g0314351 Lupinus albus HOM05D004730 ORTHO05D005705 7.7e-222 773.9 497 78.9
Atru.chr5.659 Acer truncatum HOM05D004730 ORTHO05D005705 1.3e-221 773.1 497 79.3
FvH4_7g16330 Fragaria vesca HOM05D004730 ORTHO05D005705 1.3e-221 773.1 493 80.3
FAN10G2003 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.7e-221 772.7 493 80.1
Gorai.004G152100 Gossypium raimondii HOM05D004730 ORTHO05D005705 2.2e-221 772.3 509 77.0
RcHm_v2.0_Chr1g0359341 Rosa chinensis HOM05D004730 ORTHO05D005705 2.9e-221 771.9 493 80.1
FAN06G3857 Fragaria x ananassa HOM05D004730 ORTHO05D005705 3.8e-221 771.5 493 80.1
FAN03G1043 Fragaria x ananassa HOM05D004730 ORTHO05D005705 5.0e-221 771.2 493 80.1
FAN06G4548 Fragaria x ananassa HOM05D004730 ORTHO05D005705 6.5e-221 770.8 493 80.1
PGR031G3931 Punica granatum HOM05D004730 ORTHO05D005705 8.5e-221 770.4 500 77.6
Gohir.D08G146500 Gossypium hirsutum HOM05D004730 ORTHO05D005705 5.5e-220 767.7 509 76.6
Cfa003807 Carpinus fangiana HOM05D004730 ORTHO05D005705 7.2e-220 767.3 499 78.0
MD07G1148700 Malus domestica HOM05D004730 ORTHO05D005705 1.2e-219 766.5 499 78.4
Gohir.A08G125600 Gossypium hirsutum HOM05D004730 ORTHO05D005705 3.0e-218 761.9 509 76.0
Aqoxy2G00449 Aquilegia oxysepala HOM05D004730 ORTHO05D005705 1.2e-217 760.0 501 76.2
Lj7C501G3 Lonicera japonica HOM05D004730 ORTHO05D005705 1.2e-217 760.0 575 70.3
PSO339G2575 Papaver somniferum HOM05D004730 ORTHO05D005705 1.2e-217 760.0 497 77.9
AUR62023469 Chenopodium quinoa HOM05D004730 ORTHO05D005705 2.6e-217 758.8 498 76.1
EL10Ac1g00278 Beta vulgaris HOM05D004730 ORTHO05D005705 4.4e-217 758.1 496 76.2
Hund16708 Selenicereus undatus HOM05D004730 ORTHO05D005705 3.7e-216 755.0 497 75.7
Duzib138G0598 Durio zibethinus HOM05D004730 ORTHO05D005705 4.1e-215 751.5 501 75.0
MELO3C022308.2 Cucumis melo HOM05D004730 ORTHO05D005705 9.1e-215 750.4 497 77.1
Lj3g0019549 Lotus japonicus HOM05D004730 ORTHO05D005705 9.1e-215 750.4 497 76.7
CsaV3_6G008300 Cucumis sativus L. HOM05D004730 ORTHO05D005705 1.2e-214 750.0 496 76.6
TPR.G9866 Trifolium pratense HOM05D004730 ORTHO05D005705 1.2e-214 750.0 505 76.4
Eucgr.D02369 Eucalyptus grandis HOM05D004730 ORTHO05D005705 1.6e-214 749.6 508 74.6
HanXRQChr11g0353001 Helianthus annuus HOM05D004730 ORTHO05D005705 7.7e-214 747.3 499 77.4
THA.LOC104817359 Tarenaya hassleriana HOM05D004730 ORTHO05D005705 7.7e-214 747.3 500 75.8
Medtr3g018770 Medicago truncatula HOM05D004730 ORTHO05D005705 1.3e-213 746.5 498 76.7
Glyma.11G153900 Glycine max HOM05D004730 ORTHO05D005705 1.7e-213 746.1 495 76.2
VMungo1080G1812 Vigna mungo HOM05D004730 ORTHO05D005705 1.7e-213 746.1 489 77.1
Haze_15648 Corylus avellana HOM05D004730 ORTHO05D005705 1.9e-212 742.7 530 73.0
Glyma.04G141000 Glycine max HOM05D004730 ORTHO05D005705 2.8e-211 738.8 495 75.8
MD01G1079900 Malus domestica HOM05D004730 ORTHO05D005705 8.0e-211 737.3 499 76.2
Sc23g0002110 Simmondsia chinensis HOM05D004730 ORTHO05D005705 5.2e-210 734.6 478 76.6
PSO210G5634 Papaver somniferum HOM05D004730 ORTHO05D005705 8.9e-210 733.8 497 75.3
Ah.05g179630 Amaranthus hybridus HOM05D004730 ORTHO05D005705 4.4e-209 731.5 499 73.5
CiPaw.01G075800 Carya illinoinensis HOM05D004730 ORTHO05D005705 4.4e-209 731.5 454 81.3
arahy.Tifrunner.gnm1.ann1.DU0G1C Arachis hypogaea HOM05D004730 ORTHO05D005705 7.5e-209 730.7 528 72.2
Phvul.005G029900 Phaseolus vulgaris HOM05D004730 ORTHO05D005705 9.8e-209 730.3 490 75.5
CANSAT56G1965 Cannabis sativa HOM05D004730 ORTHO05D005705 1.7e-208 729.6 499 73.7
COL.COLO4_06293 Corchorus olitorius HOM05D004730 ORTHO05D005705 3.1e-207 725.3 456 79.6
Sed0022953 Sechium edule HOM05D004730 ORTHO05D005705 1.0e-205 720.3 496 75.2
Thhalv10005894m.g Eutrema salsugineum HOM05D004730 ORTHO05D005705 3.8e-205 718.4 499 72.9
Sc01g0002740 Simmondsia chinensis HOM05D004730 ORTHO05D005705 1.1e-204 716.8 509 71.7
FAN10G3709 Fragaria x ananassa HOM05D004730 ORTHO05D005705 3.3e-204 715.3 493 75.5
Carub.0003s3432 Capsella rubella HOM05D004730 ORTHO05D005705 9.5e-204 713.8 500 72.4
Carub.0005s2846 Capsella rubella HOM05D004730 ORTHO05D005705 1.6e-203 713.0 500 72.4
Sp5g01680 Schrenkiella parvula HOM05D004730 ORTHO05D005705 1.0e-202 710.3 499 72.5
Sabra02G0142200 Salix brachista HOM05D004730 ORTHO05D005705 6.8e-202 707.6 534 69.5
CARHR172020 Cardamine hirsuta HOM05D004730 ORTHO05D005705 3.2e-199 698.7 502 70.7
AL5G44220 Arabidopsis lyrata HOM05D004730 ORTHO05D005705 6.0e-198 694.5 501 71.5
Aa31LG10G15710 Aethionema arabicum HOM05D004730 ORTHO05D005705 3.9e-197 691.8 498 71.7
Manes.01G246700 Manihot esculenta HOM05D004730 ORTHO05D005705 1.1e-196 690.3 437 80.8
ATR0213G028 Amborella trichopoda HOM05D004730 ORTHO05D005705 1.9e-196 689.5 516 69.0
C06p27700 Brassica napus HOM05D004730 ORTHO05D005705 1.5e-193 679.9 515 69.3
C06p27860 Brassica napus HOM05D004730 ORTHO05D005705 1.5e-193 679.9 515 69.3
Aa31LG1G27820 Aethionema arabicum HOM05D004730 ORTHO05D005705 1.3e-192 676.8 493 69.6
arahy.Tifrunner.gnm1.ann1.EBD5YY Arachis hypogaea HOM05D004730 ORTHO05D005705 1.7e-192 676.4 513 70.0
BolC6t37941H Brassica oleracea HOM05D004730 ORTHO05D005705 5.4e-191 671.4 537 66.5
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 3.4e-185 652.1 462 73.2
BcaC08g45152 Brassica carinata HOM05D004730 ORTHO05D005705 5.8e-185 651.4 512 66.6
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 5.8e-185 651.4 462 73.2
TWI23G0180 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 1.4e-183 646.7 505 66.5
Duzib133G1016 Durio zibethinus HOM05D004730 ORTHO05D005705 7.1e-183 644.4 501 67.3
AUR62004484 Chenopodium quinoa HOM05D004730 ORTHO05D005705 1.5e-180 636.7 454 72.2
FAN01G1335 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.8e-178 629.8 422 77.7
TWI59G0293 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 4.0e-178 628.6 511 65.0
HPP92_011453 Vanilla planifolia HOM05D004730 ORTHO05D005705 1.3e-176 623.6 510 65.7
Zm00001eb142950 Zea mays HOM05D004730 ORTHO05D005705 3.0e-173 612.5 487 65.7
Os01g0681400 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 1.5e-172 610.1 474 66.0
CDE05G0988 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 1.6e-171 606.7 498 62.2
SEGI_06994 Sequoiadendron giganteum HOM05D004730 ORTHO05D005705 5.8e-169 598.2 526 59.1
AT3G61710 Arabidopsis thaliana HOM05D004730 ORTHO05D005705 7.6e-169 597.8 440 70.5
Dinv35110 Davidia involucrata HOM05D004730 ORTHO05D005705 2.9e-168 595.9 368 82.1
Os03g0644000 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 4.9e-168 595.1 492 63.8
PGR031G3051 Punica granatum HOM05D004730 ORTHO05D005705 3.5e-166 589.0 523 61.6
Dinv32581 Davidia involucrata HOM05D004730 ORTHO05D005705 2.3e-165 586.3 368 81.2
vmacro12679 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 1.6e-163 580.1 393 74.8
SHI13286 Sapria himalayana HOM05D004730 ORTHO05D005705 3.1e-162 575.9 461 65.7
Oeu019761.1 Olea europaea HOM05D004730 ORTHO05D005705 3.8e-160 568.9 324 86.1
Os03g0258500 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 9.3e-159 564.3 470 63.0
TAR374G0734 Trochodendron aralioides HOM05D004730 ORTHO05D005705 8.7e-157 557.8 367 76.8
Zm00001eb364100 Zea mays HOM05D004730 ORTHO05D005705 1.1e-154 550.8 475 61.1
Psat5g217520 Pisum sativum HOM05D004730 ORTHO05D005705 1.1e-151 540.8 386 74.1
Pp3c10_4130 Physcomitrium patens HOM05D004730 ORTHO05D005705 1.4e-151 540.4 530 56.4
Mapoly0091s0016 Marchantia polymorpha HOM05D004730 ORTHO05D005705 1.3e-147 527.3 509 55.4
Pp3c1_21510 Physcomitrium patens HOM05D004730 ORTHO05D005705 2.4e-146 523.1 491 56.6
ClCG06G002220 Citrullus lanatus HOM05D004730 ORTHO05D005705 2.6e-145 519.6 362 75.1
SMO114G0122 Selaginella moellendorffii HOM05D004730 ORTHO05D005705 3.5e-142 509.2 486 56.2
Rhsim01G0172100 Rhododendron simsii HOM05D004730 ORTHO05D005705 1.1e-138 497.7 410 65.9
CANSAT56G2405 Cannabis sativa HOM05D004730 ORTHO05D005705 1.0e-133 481.1 277 83.8
AagrBONN_evm.TU.Sc2ySwM_344.2008 Anthoceros agrestis HOM05D004730 ORTHO05D005705 2.0e-132 476.9 511 50.9
Cpa.g.sc96.6 Carica papaya HOM05D004730 ORTHO05D005705 2.2e-128 463.4 345 72.2
BolC6t37951H Brassica oleracea HOM05D004730 ORTHO05D005705 7.9e-126 454.9 366 68.3
CBR_g66692 Chara braunii HOM05D004730 ORTHO05D005705 9.1e-114 414.8 402 53.5
MBI01_g34153_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.3e-112 411.0 472 51.9
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 5.2e-101 372.5 372 59.7
Ca_26857_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 9.5e-95 351.7 326 60.7
Actinidia20237 Actinidia chinensis HOM05D004730 ORTHO05D005705 1.4e-93 347.8 294 62.9
MBI01_g41444_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 9.5e-87 325.1 318 58.2
TAR374G1455 Trochodendron aralioides HOM05D004730 ORTHO05D005705 8.0e-86 322.0 232 70.7
CARHR263800 Cardamine hirsuta HOM05D004730 ORTHO05D005705 5.2e-77 292.7 232 64.2
MBI06_g41841_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 2.2e-75 287.3 197 70.6
FAN01G0353 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.0e-72 278.5 141 91.5
Cre01.g020264 Chlamydomonas reinhardtii HOM05D004730 ORTHO05D005705 3.0e-72 276.9 396 41.4
MCO03G136 Micromonas commoda HOM05D004730 ORTHO05D005705 1.7e-64 251.1 312 45.5
Ca_26830_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 8.1e-62 242.3 129 86.0
Cpa.g.sc96.5 Carica papaya HOM05D004730 ORTHO05D005705 7.1e-58 229.2 129 81.4
Actinidia20236 Actinidia chinensis HOM05D004730 ORTHO05D005705 9.3e-58 228.8 121 86.8
PRCOL_00007095 Prasinoderma coloniale HOM05D004730 ORTHO05D005705 3.0e-56 223.8 328 41.8
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 1.4e-53 214.9 212 60.8
Hma1.2p1_0295F.1_g116660 Hydrangea macrophylla HOM05D004730 ORTHO05D005705 2.4e-42 177.6 153 59.5
ATR0213G009 Amborella trichopoda HOM05D004730 ORTHO05D005705 3.0e-40 170.6 105 75.2
MBI01_g11796_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 2.4e-37 161.0 104 71.2
ATR0213G026 Amborella trichopoda HOM05D004730 ORTHO05D005705 1.2e-33 148.7 199 47.7
Cfa022403 Carpinus fangiana HOM05D004730 ORTHO05D005705 1.5e-28 131.7 334 29.6
arahy.Tifrunner.gnm1.ann1.PHUB4S Arachis hypogaea HOM05D004730 ORTHO05D005705 2.7e-25 120.9 68 80.9
Ca_26856_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 1.8e-24 118.2 148 52.0
CDE08G1494 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 6.9e-21 106.3 449 25.4
MBI10_g27627_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D017720 3.9e-16 90.5 65 69.2
CDE08G0541 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 2.5e-15 87.8 90 51.1
arahy.Tifrunner.gnm1.ann1.LSW4XK Arachis hypogaea HOM05D000092 ORTHO05D000042 6.9e-13 79.7 72 56.9
GSVIVG01027089001 Vitis vinifera HOM05D004730 ORTHO05D005705 1.0e-11 75.9 45 80.0
MBI01_g41445_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.4e-10 72.0 62 53.2
arahy.Tifrunner.gnm1.ann1.CLZ951 Arachis hypogaea HOM05D004730 ORTHO05D005705 3.6e-09 67.4 38 81.6
SGA_v2.0_scaffold48G17919 Striga asiatica HOM05D004164 ORTHO05D004891 1.8e-08 65.1 89 43.8
MBI14_g24972_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 8.8e-08 62.8 63 61.9
SGA_v2.0_scaffold47G17582 Striga asiatica HOM05D004164 ORTHO05D004891 2.0e-07 61.6 38 73.7
arahy.Tifrunner.gnm1.ann1.VTA1BU Arachis hypogaea HOM05D004730 ORTHO05D005705 5.7e-07 60.1 33 81.8


User provided reference genes

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