Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.17312 Avicennia marina HOM05D005854 ORTHO05D007175 3.5e-127 458.4 245 100.0
Oeu063662.1 Olea europaea HOM05D005854 ORTHO05D007175 5.5e-104 381.3 244 83.2
Migut.B01823 Erythranthe guttata HOM05D005854 ORTHO05D007175 1.6e-103 379.8 246 81.7
SalBow5G1869 Salvia bowleyana HOM05D005854 ORTHO05D007175 5.3e-99 364.8 246 80.5
SalBow6G6433 Salvia bowleyana HOM05D005854 ORTHO05D007175 3.4e-98 362.1 246 79.7
SGA_v2.0_scaffold11G05711 Striga asiatica HOM05D005854 ORTHO05D007175 2.5e-93 345.9 227 81.5
Cc02_g38850 Coffea canephora HOM05D005854 ORTHO05D007175 8.2e-92 340.9 251 73.7
Sopen01g039170 Solanum pennellii HOM05D005854 ORTHO05D007175 1.4e-91 340.1 245 73.5
Solyc01g095420.3 Solanum lycopersicum HOM05D005854 ORTHO05D007175 2.0e-90 336.3 242 73.1
CAN.G78.154 Capsicum annuum HOM05D005854 ORTHO05D007175 1.0e-89 334.0 245 73.5
Nitab4.5_0004613g0050 Nicotiana tabacum HOM05D005854 ORTHO05D007175 3.8e-89 332.0 237 73.0
Nitab4.5_0000305g0260 Nicotiana tabacum HOM05D005854 ORTHO05D007175 6.5e-89 331.3 237 73.0
Peaxi162Scf01012g00238 Petunia axillaris HOM05D005854 ORTHO05D007175 4.6e-87 325.1 236 73.7
PGSC0003DMG400000203 Solanum tuberosum HOM05D005854 ORTHO05D007175 4.6e-87 325.1 229 74.2
Lj9P593T21 Lonicera japonica HOM05D005854 ORTHO05D007175 1.8e-86 323.2 249 72.7
vmacro13205 Vaccinium macrocarpon HOM05D005854 ORTHO05D007175 6.7e-86 321.2 247 70.9
unitig_26.g8933 Utricularia gibba HOM05D005854 ORTHO05D007175 9.7e-85 317.4 246 73.2
CSS0045126 Camellia sinensis var. sinensis HOM05D005854 ORTHO05D007175 1.1e-83 313.9 242 71.5
Actinidia10096 Actinidia chinensis HOM05D005854 ORTHO05D007175 5.3e-83 311.6 248 71.0
PGR031G0642 Punica granatum HOM05D005854 ORTHO05D007175 9.1e-83 310.8 244 73.8
Duzib147G0085 Durio zibethinus HOM05D005854 ORTHO05D007175 1.0e-81 307.4 250 67.2
Thecc.01G121600 Theobroma cacao HOM05D005854 ORTHO05D007175 2.9e-81 305.8 237 70.9
Gohir.A02G138400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 1.1e-80 303.9 237 70.0
Hund23260 Selenicereus undatus HOM05D005854 ORTHO05D007175 1.1e-80 303.9 248 67.3
Gorai.003G050300 Gossypium raimondii HOM05D005854 ORTHO05D007175 1.4e-80 303.5 237 70.0
Cpa.g.sc10.16 Carica papaya HOM05D005854 ORTHO05D007175 2.5e-80 302.8 247 69.2
Gohir.D03G049000 Gossypium hirsutum HOM05D005854 ORTHO05D007175 7.2e-80 301.2 237 69.2
TWI53G0615 Tripterygium wilfordii HOM05D005854 ORTHO05D007175 1.2e-79 300.4 246 68.7
Gohir.A03G042400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 6.1e-79 298.1 237 68.4
Nn2g15034 Nelumbo nucifera HOM05D005854 ORTHO05D007175 1.4e-78 297.0 248 66.9
Manes.06G055200 Manihot esculenta HOM05D005854 ORTHO05D007175 2.3e-78 296.2 236 68.2
DCAR_020830 Daucus carota HOM05D005854 ORTHO05D007175 3.9e-78 295.4 242 64.9
Sc26g0000750 Simmondsia chinensis HOM05D005854 ORTHO05D007175 3.9e-78 295.4 244 68.0
Duzib187G0164 Durio zibethinus HOM05D005854 ORTHO05D007175 8.8e-78 294.3 237 67.9
Ciclev10016474m.g Citrus clementina HOM05D005854 ORTHO05D007175 1.1e-77 293.9 243 68.3
Hma1.2p1_0397F.1_g143770 Hydrangea macrophylla HOM05D005854 ORTHO05D007175 1.5e-77 293.5 254 65.7
COL.COLO4_22426 Corchorus olitorius HOM05D005854 ORTHO05D007175 2.0e-77 293.1 235 69.4
CANSAT54G0206 Cannabis sativa HOM05D005854 ORTHO05D007175 5.7e-77 291.6 245 66.9
TAR383G0748 Trochodendron aralioides HOM05D005854 ORTHO05D007175 7.4e-77 291.2 244 67.6
Lalb_Chr10g0100131 Lupinus albus HOM05D005854 ORTHO05D007175 2.2e-76 289.7 244 66.0
RcHm_v2.0_Chr3g0451741 Rosa chinensis HOM05D005854 ORTHO05D007175 3.7e-76 288.9 243 65.4
MD04G1222200 Malus domestica HOM05D005854 ORTHO05D007175 4.8e-76 288.5 243 67.5
AUR62004438 Chenopodium quinoa HOM05D005854 ORTHO05D007175 8.2e-76 287.7 238 67.2
AUR62023510 Chenopodium quinoa HOM05D005854 ORTHO05D007175 4.1e-75 285.4 238 66.4
Lsat_1_v5_gn_7_1520 Lactuca sativa HOM05D005854 ORTHO05D007175 4.1e-75 285.4 255 64.7
EL10Ac1g00324 Beta vulgaris HOM05D005854 ORTHO05D007175 5.3e-75 285.0 248 63.7
FvH4_6g03270 Fragaria vesca HOM05D005854 ORTHO05D007175 2.0e-74 283.1 244 65.2
arahy.Tifrunner.gnm1.ann1.788ENG Arachis hypogaea HOM05D005854 ORTHO05D007175 4.5e-74 282.0 242 64.5
Atru.chr10.871 Acer truncatum HOM05D005854 ORTHO05D007175 5.9e-74 281.6 244 64.8
arahy.Tifrunner.gnm1.ann1.GVN9XJ Arachis hypogaea HOM05D005854 ORTHO05D007175 5.9e-74 281.6 242 64.5
CsaV3_3G008340 Cucumis sativus L. HOM05D005854 ORTHO05D007175 5.9e-74 281.6 243 65.0
TPR.G21281 Trifolium pratense HOM05D005854 ORTHO05D007175 7.7e-74 281.2 250 62.4
CiPaw.02G037800 Carya illinoinensis HOM05D005854 ORTHO05D007175 1.3e-73 280.4 237 64.1
Glyma.07G060800 Glycine max HOM05D005854 ORTHO05D007175 3.8e-73 278.9 239 63.6
FAN05G3773 Fragaria x ananassa HOM05D005854 ORTHO05D007175 5.0e-73 278.5 237 65.0
Ah.05g179960 Amaranthus hybridus HOM05D005854 ORTHO05D007175 1.1e-72 277.3 248 62.9
Haze_15607 Corylus avellana HOM05D005854 ORTHO05D007175 1.1e-72 277.3 247 64.8
PSO339G2746 Papaver somniferum HOM05D005854 ORTHO05D007175 1.1e-72 277.3 240 65.0
VMungo0331G0610 Vigna mungo HOM05D005854 ORTHO05D007175 1.1e-72 277.3 228 64.0
Ca_25392_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 1.5e-72 276.9 241 64.3
PSO801G0186 Papaver somniferum HOM05D005854 ORTHO05D007175 3.2e-72 275.8 240 65.0
QL04p059766 Quercus lobata HOM05D005854 ORTHO05D007175 3.2e-72 275.8 237 63.3
Haze_23551 Corylus avellana HOM05D005854 ORTHO05D007175 4.2e-72 275.4 247 64.4
Phvul.010G108400 Phaseolus vulgaris HOM05D005854 ORTHO05D007175 5.5e-72 275.0 230 64.3
Cfa006467 Carpinus fangiana HOM05D005854 ORTHO05D007175 7.2e-72 274.6 247 64.4
Sed0001947 Sechium edule HOM05D005854 ORTHO05D007175 9.4e-72 274.2 243 63.0
Psat4g213880 Pisum sativum HOM05D005854 ORTHO05D007175 2.1e-71 273.1 248 62.5
HanXRQChr04g0120611 Helianthus annuus HOM05D005854 ORTHO05D007175 3.6e-71 272.3 255 62.0
Potri.011G098000 Populus trichocarpa HOM05D005854 ORTHO05D007175 1.8e-70 270.0 236 64.4
Medtr8g023960 Medicago truncatula HOM05D005854 ORTHO05D007175 6.7e-70 268.1 229 65.1
MELO3C006052.2 Cucumis melo HOM05D005854 ORTHO05D007175 8.8e-70 267.7 243 63.0
Lj3g0026359 Lotus japonicus HOM05D005854 ORTHO05D007175 2.6e-69 266.2 246 62.6
Glyma.16G029400 Glycine max HOM05D005854 ORTHO05D007175 1.7e-68 263.5 221 65.2
ATR0594G138 Amborella trichopoda HOM05D005854 ORTHO05D007175 3.7e-68 262.3 244 63.5
Ca_23562_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 4.8e-68 261.9 241 61.4
HPP92_025111 Vanilla planifolia HOM05D005854 ORTHO05D007175 4.8e-68 261.9 239 64.9
Sabra11G0084900 Salix brachista HOM05D005854 ORTHO05D007175 1.4e-67 260.4 235 63.0
Sabra11G0091100 Salix brachista HOM05D005854 ORTHO05D007175 1.4e-67 260.4 235 63.0
Rhsim07G0008000 Rhododendron simsii HOM05D005854 ORTHO05D007175 4.1e-67 258.8 248 60.1
Gorai.003G131400 Gossypium raimondii HOM05D005854 ORTHO05D007175 5.3e-67 258.5 243 59.7
Aqoxy5G03507 Aquilegia oxysepala HOM05D005854 ORTHO05D007175 1.2e-66 257.3 253 60.5
Oeu007833.1 Olea europaea HOM05D005854 ORTHO05D007175 3.5e-66 255.8 177 76.8
CARHR252180 Cardamine hirsuta HOM05D005854 ORTHO05D007175 1.7e-65 253.4 256 56.2
FAN09G2134 Fragaria x ananassa HOM05D005854 ORTHO05D007175 2.1e-63 246.5 241 59.3
AT4G05400 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 4.7e-63 245.4 252 54.4
Thhalv10026066m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 1.0e-62 244.2 246 56.5
Carub.0006s3331 Capsella rubella HOM05D005854 ORTHO05D007175 1.4e-62 243.8 252 54.4
Zm00001eb249970 Zea mays HOM05D005854 ORTHO05D007175 1.8e-62 243.4 248 57.7
MBI04_g37933_MAGBIO Magnolia biondii HOM05D005854 ORTHO05D007175 3.0e-62 242.7 250 61.2
AL7G32980 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 8.8e-62 241.1 248 55.2
Thhalv10028903m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 8.8e-62 241.1 255 53.7
AL6G48990 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 1.5e-61 240.4 254 53.5
Carub.0007s2029 Capsella rubella HOM05D005854 ORTHO05D007175 3.4e-61 239.2 242 55.0
Sp6g03690 Schrenkiella parvula HOM05D005854 ORTHO05D007175 4.4e-61 238.8 255 52.5
ECA236G4309 Erigeron canadensis HOM05D005854 ORTHO05D007175 9.8e-61 237.7 236 58.9
C09p32360 Brassica napus HOM05D005854 ORTHO05D007175 1.3e-60 237.3 249 53.4
BolC9t56081H Brassica oleracea HOM05D005854 ORTHO05D007175 1.3e-60 237.3 249 53.4
Os01g0511200 Oryza sativa ssp. japonica HOM05D005854 ORTHO05D007175 2.2e-60 236.5 245 56.3
AT4G21140 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 2.8e-60 236.1 246 54.1
Aa31LG9G9180 Aethionema arabicum HOM05D005854 ORTHO05D007175 4.8e-60 235.3 234 55.6
A09p25360 Brassica napus HOM05D005854 ORTHO05D007175 1.1e-59 234.2 255 52.5
Gohir.D03G125200 Gossypium hirsutum HOM05D005854 ORTHO05D007175 2.4e-59 233.0 182 66.5
BraA09t38118Z Brassica rapa HOM05D005854 ORTHO05D007175 7.7e-58 228.0 255 51.8
Dinv32544 Davidia involucrata HOM05D005854 ORTHO05D007175 1.3e-57 227.3 190 66.3
BcaB01g01902 Brassica carinata HOM05D005854 ORTHO05D007175 6.1e-55 218.4 256 49.6
CARHR227720 Cardamine hirsuta HOM05D005854 ORTHO05D007175 1.5e-53 213.8 244 49.2
A01p12480 Brassica napus HOM05D005854 ORTHO05D007175 2.0e-50 203.4 237 49.8
C01p15070 Brassica napus HOM05D005854 ORTHO05D007175 4.5e-50 202.2 236 50.4
Cfa005769 Carpinus fangiana HOM05D005854 ORTHO05D007175 1.3e-49 200.7 199 58.3
BcaC09g51255 Brassica carinata HOM05D005854 ORTHO05D007175 1.7e-49 200.3 236 50.0
BolC1t01456H Brassica oleracea HOM05D005854 ORTHO05D007175 1.7e-49 200.3 236 50.0
Prupe.6G341300 Prunus persica HOM05D005854 ORTHO05D007175 8.6e-49 198.0 121 84.3
BcaNung03840 Brassica carinata HOM05D005854 ORTHO05D007175 1.9e-48 196.8 247 47.0
BraA01t01194Z Brassica rapa HOM05D005854 ORTHO05D007175 2.1e-47 193.4 246 47.6
Cc00_g15140 Coffea canephora HOM05D005854 ORTHO05D007175 4.7e-39 165.6 144 63.9
Actinidia20188 Actinidia chinensis HOM05D005854 ORTHO05D007175 1.4e-35 154.1 239 43.9
Sp7g19220 Schrenkiella parvula HOM05D005854 ORTHO05D007175 3.2e-35 152.9 121 62.8
MD12G1238400 Malus domestica HOM05D005854 ORTHO05D007175 2.5e-32 143.3 121 64.5
Pp3c17_23470 Physcomitrium patens HOM05D005854 ORTHO05D007175 3.2e-27 126.3 216 38.4
TAR369G1106 Trochodendron aralioides HOM05D005854 ORTHO05D007175 4.6e-26 122.5 75 85.3
AagrBONN_evm.TU.Sc2ySwM_362.2286 Anthoceros agrestis HOM05D005854 ORTHO05D007175 1.9e-24 117.1 174 42.0
CDE04G0249 Ceratophyllum demersum HOM05D005854 ORTHO05D007175 5.6e-24 115.5 125 54.4
Lsat_1_v5_gn_3_52500 Lactuca sativa HOM05D005854 ORTHO05D007175 3.1e-22 109.8 79 79.7
CBR_g40874 Chara braunii HOM05D005854 ORTHO05D007175 2.4e-19 100.1 87 58.6
FvH4_6g03230 Fragaria vesca HOM05D005854 ORTHO05D007175 6.2e-15 85.5 95 54.7
Mapoly0007s0267 Marchantia polymorpha HOM05D005854 ORTHO05D007175 6.9e-14 82.0 150 37.3
Lsat_1_v5_gn_4_144561 Lactuca sativa HOM05D005854 ORTHO05D007175 3.4e-13 79.7 117 45.3
FvH4_6g03240 Fragaria vesca HOM05D005854 ORTHO05D007175 4.2e-11 72.8 61 57.4
Nn3g18457 Nelumbo nucifera HOM05D005854 ORTHO05D007175 2.7e-10 70.1 86 47.7
Lsat_1_v5_gn_3_52480 Lactuca sativa HOM05D005854 ORTHO05D007175 3.5e-10 69.7 68 57.4
RcHm_v2.0_Chr3g0451651 Rosa chinensis HOM05D005854 ORTHO05D007175 1.5e-08 64.3 57 61.4


User provided reference genes

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