Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.16972 Avicennia marina HOM05D006707 ORTHO05D008243 2.8e-180 636.3 360 100.0
Migut.I00309 Erythranthe guttata HOM05D006707 ORTHO05D008243 1.0e-102 378.6 316 76.3
SalBow6G7169 Salvia bowleyana HOM05D006707 ORTHO05D008243 2.0e-90 337.8 322 68.9
Oeu010709.1 Olea europaea HOM05D006707 ORTHO05D008243 2.0e-82 311.2 326 63.2
SGA_v2.0_scaffold192G40603 Striga asiatica HOM05D006707 ORTHO05D008243 2.0e-74 284.6 314 63.4
Dinv07298 Davidia involucrata HOM05D006707 ORTHO05D008243 3.6e-71 273.9 260 70.4
Dinv27614 Davidia involucrata HOM05D006707 ORTHO05D008243 3.6e-71 273.9 260 70.4
Nn4g24204 Nelumbo nucifera HOM05D006707 ORTHO05D008243 6.8e-70 269.6 264 68.6
Actinidia25143 Actinidia chinensis HOM05D006707 ORTHO05D008243 2.0e-69 268.1 305 60.0
CAN.G1129.54 Capsicum annuum HOM05D006707 ORTHO05D008243 2.0e-69 268.1 262 71.0
Nitab4.5_0003968g0010 Nicotiana tabacum HOM05D006707 ORTHO05D008243 9.8e-69 265.8 304 63.2
Solyc03g118790.3 Solanum lycopersicum HOM05D006707 ORTHO05D008243 9.8e-69 265.8 266 68.0
GSVIVG01016661001 Vitis vinifera HOM05D006707 ORTHO05D008243 1.3e-68 265.4 257 69.6
Sabra15G0070700 Salix brachista HOM05D006707 ORTHO05D008243 6.4e-68 263.1 302 61.9
Nitab4.5_0001456g0170 Nicotiana tabacum HOM05D006707 ORTHO05D008243 8.3e-68 262.7 306 61.4
Sopen03g037740 Solanum pennellii HOM05D006707 ORTHO05D008243 1.1e-67 262.3 266 67.3
QL11p013929 Quercus lobata HOM05D006707 ORTHO05D008243 1.9e-67 261.5 293 56.0
Potri.015G039300 Populus trichocarpa HOM05D006707 ORTHO05D008243 2.4e-67 261.2 272 66.9
TAR622G1063 Trochodendron aralioides HOM05D006707 ORTHO05D008243 5.4e-67 260.0 259 68.3
QL11p014448 Quercus lobata HOM05D006707 ORTHO05D008243 1.2e-66 258.8 300 55.3
Sabra15G0069900 Salix brachista HOM05D006707 ORTHO05D008243 1.2e-66 258.8 302 61.6
Manes.06G007500 Manihot esculenta HOM05D006707 ORTHO05D008243 2.1e-66 258.1 262 67.6
Sabra15G0057600 Salix brachista HOM05D006707 ORTHO05D008243 2.7e-66 257.7 302 60.9
PGSC0003DMG400005747 Solanum tuberosum HOM05D006707 ORTHO05D008243 3.5e-66 257.3 262 67.2
EL10Ac3g06722 Beta vulgaris HOM05D006707 ORTHO05D008243 4.6e-66 256.9 254 68.9
Peaxi162Scf00683g00048 Petunia axillaris HOM05D006707 ORTHO05D008243 1.0e-65 255.8 293 63.5
Sabra15G0038500 Salix brachista HOM05D006707 ORTHO05D008243 3.0e-65 254.2 258 68.6
Cfa019000 Carpinus fangiana HOM05D006707 ORTHO05D008243 8.6e-65 252.7 262 66.0
MD06G1231100 Malus domestica HOM05D006707 ORTHO05D008243 8.6e-65 252.7 286 60.5
Prupe.5G232400 Prunus persica HOM05D006707 ORTHO05D008243 7.3e-64 249.6 267 65.2
AUR62035349 Chenopodium quinoa HOM05D006707 ORTHO05D008243 1.6e-63 248.4 301 58.5
Sed0000825 Sechium edule HOM05D006707 ORTHO05D008243 4.7e-63 246.9 305 58.4
AUR62035893 Chenopodium quinoa HOM05D006707 ORTHO05D008243 6.2e-63 246.5 303 57.1
RhsimUnG0239000 Rhododendron simsii HOM05D006707 ORTHO05D008243 1.1e-62 245.7 309 58.6
DCAR_014733 Daucus carota HOM05D006707 ORTHO05D008243 1.4e-62 245.4 258 64.3
FvH4_5g17250 Fragaria vesca HOM05D006707 ORTHO05D008243 2.3e-62 244.6 268 63.1
FAN08G3326 Fragaria x ananassa HOM05D006707 ORTHO05D008243 2.3e-62 244.6 266 62.8
FAN18G2052 Fragaria x ananassa HOM05D006707 ORTHO05D008243 2.3e-62 244.6 268 63.1
ClCG06G014360 Citrullus lanatus HOM05D006707 ORTHO05D008243 3.1e-62 244.2 260 66.9
Lj5P156T67 Lonicera japonica HOM05D006707 ORTHO05D008243 5.2e-62 243.4 299 58.9
CsaV3_1G004300 Cucumis sativus L. HOM05D006707 ORTHO05D008243 8.9e-62 242.7 259 66.4
RhsimUnG0220600 Rhododendron simsii HOM05D006707 ORTHO05D008243 3.4e-61 240.7 261 64.8
Sc10g0004790 Simmondsia chinensis HOM05D006707 ORTHO05D008243 5.8e-61 240.0 254 67.7
Cc04_g06350 Coffea canephora HOM05D006707 ORTHO05D008243 1.3e-60 238.8 310 60.6
Rhsim03G0042300 Rhododendron simsii HOM05D006707 ORTHO05D008243 1.7e-60 238.4 297 59.6
CiPaw.15G142400 Carya illinoinensis HOM05D006707 ORTHO05D008243 2.9e-60 237.7 267 61.8
Haze_21123 Corylus avellana HOM05D006707 ORTHO05D008243 1.1e-59 235.7 283 60.4
RcHm_v2.0_Chr7g0178541 Rosa chinensis HOM05D006707 ORTHO05D008243 3.2e-59 234.2 270 61.1
Thecc.03G054200 Theobroma cacao HOM05D006707 ORTHO05D008243 2.7e-58 231.1 260 58.1
TWI81G0630 Tripterygium wilfordii HOM05D006707 ORTHO05D008243 1.3e-57 228.8 295 60.7
Ah.04g153500 Amaranthus hybridus HOM05D006707 ORTHO05D008243 3.3e-56 224.2 272 62.1
PSO478G5041 Papaver somniferum HOM05D006707 ORTHO05D008243 5.6e-56 223.4 260 63.8
Lj5A157G52 Lonicera japonica HOM05D006707 ORTHO05D008243 7.3e-56 223.0 249 64.7
Duzib205G0649 Durio zibethinus HOM05D006707 ORTHO05D008243 1.6e-55 221.9 261 55.9
Hund22248 Selenicereus undatus HOM05D006707 ORTHO05D008243 3.6e-55 220.7 267 62.2
BraA05t22012Z Brassica rapa HOM05D006707 ORTHO05D008243 1.8e-54 218.4 280 60.0
COL.COLO4_35387 Corchorus olitorius HOM05D006707 ORTHO05D008243 2.4e-54 218.0 314 51.6
BcaC05g28725 Brassica carinata HOM05D006707 ORTHO05D008243 3.1e-54 217.6 277 59.6
A05p31810 Brassica napus HOM05D006707 ORTHO05D008243 3.1e-54 217.6 280 59.6
BolC5t33562H Brassica oleracea HOM05D006707 ORTHO05D008243 3.1e-54 217.6 277 59.6
Eucgr.K02270 Eucalyptus grandis HOM05D006707 ORTHO05D008243 8.9e-54 216.1 274 59.5
CARHR093330 Cardamine hirsuta HOM05D006707 ORTHO05D008243 1.7e-52 211.8 263 61.6
C05p48280 Brassica napus HOM05D006707 ORTHO05D008243 2.9e-52 211.1 275 59.6
BcaB06g25867 Brassica carinata HOM05D006707 ORTHO05D008243 6.4e-52 209.9 286 58.4
Aa31LG8G4870 Aethionema arabicum HOM05D006707 ORTHO05D008243 8.4e-52 209.5 260 61.9
AL3G31170 Arabidopsis lyrata HOM05D006707 ORTHO05D008243 8.4e-52 209.5 263 61.2
AT3G18020 Arabidopsis thaliana HOM05D006707 ORTHO05D008243 1.1e-51 209.1 263 60.8
Thhalv10020183m.g Eutrema salsugineum HOM05D006707 ORTHO05D008243 1.1e-51 209.1 263 61.2
HPP92_007817 Vanilla planifolia HOM05D006707 ORTHO05D008243 1.1e-51 209.1 310 43.5
THA.LOC104820351 Tarenaya hassleriana HOM05D006707 ORTHO05D008243 2.4e-51 208.0 263 61.6
Carub.0003s1773 Capsella rubella HOM05D006707 ORTHO05D008243 3.2e-51 207.6 263 60.5
Aqoxy3G00090 Aquilegia oxysepala HOM05D006707 ORTHO05D008243 4.2e-51 207.2 250 62.8
Lsat_1_v5_gn_6_99620 Lactuca sativa HOM05D006707 ORTHO05D008243 7.1e-51 206.5 261 60.2
Sp3g16130 Schrenkiella parvula HOM05D006707 ORTHO05D008243 2.1e-50 204.9 299 55.9
Cpa.g.sc3.405 Carica papaya HOM05D006707 ORTHO05D008243 7.3e-48 196.4 235 60.0
CANSAT11G1044 Cannabis sativa HOM05D006707 ORTHO05D008243 6.9e-46 189.9 219 64.8
Medtr7g070420 Medicago truncatula HOM05D006707 ORTHO05D008243 1.9e-43 181.8 227 62.6
Atru.BG.186.p Acer truncatum HOM05D006707 ORTHO05D008243 4.2e-43 180.6 218 66.5
Ca_07699_v3 Cicer arietinum L. HOM05D006707 ORTHO05D000099 9.3e-43 179.5 238 60.9
TPR.G37093 Trifolium pratense HOM05D006707 ORTHO05D008243 9.3e-43 179.5 228 62.3
Psat3g124000 Pisum sativum HOM05D006707 ORTHO05D008243 3.5e-42 177.6 220 63.6
HanXRQChr10g0279071 Helianthus annuus HOM05D006707 ORTHO05D008243 8.7e-41 172.9 260 53.1
TPR.G35815 Trifolium pratense HOM05D006707 ORTHO05D008243 4.3e-40 170.6 225 61.3
PGR044G0521 Punica granatum HOM05D006707 ORTHO05D008243 5.6e-40 170.2 240 60.4
Glyma.18G207800 Glycine max HOM05D006707 ORTHO05D008243 7.3e-40 169.9 220 62.3
Lj1g0019371 Lotus japonicus HOM05D006707 ORTHO05D008243 1.1e-38 166.0 221 60.6
Phvul.010G093200 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 1.8e-38 165.2 222 61.3
vmacro07812 Vaccinium macrocarpon HOM05D006707 ORTHO05D008243 5.3e-38 163.7 250 40.8
VMungo1383G0390 Vigna mungo HOM05D006707 ORTHO05D008243 4.5e-37 160.6 222 59.9
CDE07G1516 Ceratophyllum demersum HOM05D006707 ORTHO05D008243 2.2e-36 158.3 260 54.2
PSO017G3187 Papaver somniferum HOM05D006707 ORTHO05D008243 1.9e-35 155.2 146 54.1
arahy.Tifrunner.gnm1.ann1.72MQAV Arachis hypogaea HOM05D000449 ORTHO05D008243 2.7e-34 151.4 221 57.9
ATR0564G450 Amborella trichopoda HOM05D006707 ORTHO05D008243 6.7e-33 146.7 261 52.9
Lalb_Chr04g0260761 Lupinus albus HOM05D006707 ORTHO05D008243 1.5e-32 145.6 221 56.1
arahy.Tifrunner.gnm1.ann1.U18B68 Arachis hypogaea HOM05D000449 ORTHO05D008243 4.3e-32 144.1 218 57.3
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 1.3e-31 142.5 218 56.9
Haze_18837 Corylus avellana HOM05D006707 ORTHO05D008243 1.3e-31 142.5 155 48.4
QL11p014441 Quercus lobata HOM05D006707 ORTHO05D008243 1.6e-26 125.6 131 49.6
SEGI_24072 Sequoiadendron giganteum HOM05D006707 ORTHO05D008243 2.7e-26 124.8 258 50.0
Os07g0674300 Oryza sativa ssp. japonica HOM05D006707 ORTHO05D008243 1.0e-17 96.3 242 33.1
ECA246G2801 Erigeron canadensis HOM05D006707 ORTHO05D008243 3.9e-17 94.4 71 62.0
Ciclev10024364m.g Citrus clementina HOM05D006707 ORTHO05D008243 1.5e-16 92.4 69 62.3
Zm00001eb111370 Zea mays HOM05D006707 ORTHO05D008243 9.7e-16 89.7 225 31.1
CSS0017365 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 4.8e-15 87.4 61 68.9
CSS0026236 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 4.8e-15 87.4 61 68.9
HanXRQChr10g0277831 Helianthus annuus HOM05D006707 ORTHO05D008243 5.3e-14 84.0 166 30.1
arahy.Tifrunner.gnm1.ann1.55ENF0 Arachis hypogaea HOM05D006707 ORTHO05D008243 1.9e-11 75.5 141 29.1
Rhsim03G0043000 Rhododendron simsii HOM05D006707 ORTHO05D008243 5.5e-11 73.9 57 61.4
PSO017G4261 Papaver somniferum HOM05D006707 ORTHO05D008243 2.7e-10 71.6 45 68.9
FAN13G2143 Fragaria x ananassa HOM05D006707 ORTHO05D008243 3.0e-09 68.2 52 61.5
Phvul.008G091500 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 4.8e-07 60.8 71 42.3
BcaB04g17239 Brassica carinata HOM05D006707 ORTHO05D008243 3.1e-06 58.2 58 56.9


User provided reference genes

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