Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.16532 Avicennia marina HOM05D004799 ORTHO05D005500 4.5e-75 284.6 160 100.0
Migut.B00668 Erythranthe guttata HOM05D004799 ORTHO05D005500 1.4e-44 183.3 155 71.6
SGA_v2.0_scaffold110G31288 Striga asiatica HOM05D004799 ORTHO05D005500 1.3e-42 176.8 162 64.8
MSTRG.27841 Avicennia marina HOM05D004799 ORTHO05D005500 2.3e-42 176.0 157 66.9
Cc02_g22290 Coffea canephora HOM05D004799 ORTHO05D005500 9.0e-39 164.1 162 64.2
Dinv19352 Davidia involucrata HOM05D004799 ORTHO05D005500 1.2e-38 163.7 152 62.5
Oeu012743.2 Olea europaea HOM05D004799 ORTHO05D005500 7.6e-38 161.0 178 59.0
Oeu008877.2 Olea europaea HOM05D004799 ORTHO05D005500 9.9e-38 160.6 190 56.8
PGSC0003DMG400023776 Solanum tuberosum HOM05D004799 ORTHO05D005500 2.2e-37 159.5 156 60.3
Sopen01g046960 Solanum pennellii HOM05D004799 ORTHO05D005500 4.9e-37 158.3 156 60.3
Hma1.2p1_0217F.1_g091930 Hydrangea macrophylla HOM05D004799 ORTHO05D005500 3.2e-36 155.6 154 61.7
Peaxi162Scf00011g00139 Petunia axillaris HOM05D004799 ORTHO05D005500 9.3e-36 154.1 161 57.8
Nn1g08619 Nelumbo nucifera HOM05D004799 ORTHO05D005500 1.0e-34 150.6 159 57.2
GSVIVG01023017001 Vitis vinifera HOM05D004799 ORTHO05D005500 2.3e-34 149.4 161 57.8
Actinidia00218 Actinidia chinensis HOM05D004799 ORTHO05D005500 2.5e-33 146.0 155 60.0
Cfa005544 Carpinus fangiana HOM05D004799 ORTHO05D005500 4.8e-32 141.7 158 56.3
Haze_01626 Corylus avellana HOM05D004799 ORTHO05D005500 4.8e-32 141.7 158 55.7
Sabra03G0013400 Salix brachista HOM05D004799 ORTHO05D005500 6.2e-32 141.4 157 59.2
Lj5A248T74 Lonicera japonica HOM05D004799 ORTHO05D005500 8.1e-32 141.0 156 58.3
Ciclev10002345m.g Citrus clementina HOM05D004799 ORTHO05D005500 1.1e-31 140.6 169 55.0
MD08G1225100 Malus domestica HOM05D004799 ORTHO05D005500 1.4e-31 140.2 156 60.3
Duzib132G0636 Durio zibethinus HOM05D004799 ORTHO05D005500 4.0e-31 138.7 161 58.4
Manes.07G013800 Manihot esculenta HOM05D004799 ORTHO05D005500 9.0e-31 137.5 155 55.5
CAN.G1352.25 Capsicum annuum HOM05D004799 ORTHO05D005500 7.6e-30 134.4 156 52.6
MD15G1418700 Malus domestica HOM05D004799 ORTHO05D005500 7.6e-30 134.4 155 56.1
Manes.10G132000 Manihot esculenta HOM05D004799 ORTHO05D005500 9.9e-30 134.0 160 53.8
Cpa.g.sc2.26 Carica papaya HOM05D004799 ORTHO05D005500 1.3e-29 133.7 161 53.4
Dinv24262 Davidia involucrata HOM05D004799 ORTHO05D005500 1.7e-29 133.3 148 56.1
Duzib248G0546 Durio zibethinus HOM05D004799 ORTHO05D005500 1.7e-29 133.3 160 55.6
arahy.Tifrunner.gnm1.ann1.BG3XJE Arachis hypogaea HOM05D004799 ORTHO05D005500 3.8e-29 132.1 150 57.3
TAR628G0692 Trochodendron aralioides HOM05D004799 ORTHO05D005500 3.8e-29 132.1 160 53.1
Potri.001G209100 Populus trichocarpa HOM05D004799 ORTHO05D005500 4.9e-29 131.7 159 57.2
Potri.003G021500 Populus trichocarpa HOM05D004799 ORTHO05D005500 4.9e-29 131.7 156 57.1
arahy.Tifrunner.gnm1.ann1.ZS42GJ Arachis hypogaea HOM05D004799 ORTHO05D005500 6.4e-29 131.3 150 57.3
TAR376G0767 Trochodendron aralioides HOM05D004799 ORTHO05D005500 8.4e-29 131.0 161 54.7
vmacro01776 Vaccinium macrocarpon HOM05D004799 ORTHO05D005500 8.4e-29 131.0 190 47.9
Gohir.A03G210900 Gossypium hirsutum HOM05D004799 ORTHO05D005500 1.1e-28 130.6 160 56.9
FvH4_5g30080 Fragaria vesca HOM05D004799 ORTHO05D005500 1.4e-28 130.2 159 58.5
FAN13G3307 Fragaria x ananassa HOM05D004799 ORTHO05D005500 1.4e-28 130.2 159 58.5
FAN18G4597 Fragaria x ananassa HOM05D004799 ORTHO05D005500 1.4e-28 130.2 159 58.5
Medtr2g007770 Medicago truncatula HOM05D004799 ORTHO05D005500 1.4e-28 130.2 152 53.9
Nitab4.5_0010140g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 2.4e-28 129.4 156 52.6
TPR.G2141 Trifolium pratense HOM05D004799 ORTHO05D005500 3.2e-28 129.0 150 54.7
Lj6g0003329 Lotus japonicus HOM05D004799 ORTHO05D005500 5.4e-28 128.3 148 52.0
FAN04G2475 Fragaria x ananassa HOM05D004799 ORTHO05D005500 7.1e-28 127.9 159 57.2
Lsat_1_v5_gn_9_116381 Lactuca sativa HOM05D004799 ORTHO05D005500 9.3e-28 127.5 158 56.3
Lalb_Chr07g0185691 Lupinus albus HOM05D004799 ORTHO05D005500 1.6e-27 126.7 169 52.7
Gohir.A01G177000 Gossypium hirsutum HOM05D004799 ORTHO05D005500 2.1e-27 126.3 159 54.1
Gohir.D01G167800 Gossypium hirsutum HOM05D004799 ORTHO05D005500 2.1e-27 126.3 160 53.8
Gorai.002G208500 Gossypium raimondii HOM05D004799 ORTHO05D005500 3.5e-27 125.6 160 55.0
CiPaw.06G148900 Carya illinoinensis HOM05D004799 ORTHO05D005500 4.6e-27 125.2 161 51.6
Eucgr.I02711 Eucalyptus grandis HOM05D004799 ORTHO05D005500 6.0e-27 124.8 161 51.6
Prupe.1G562800 Prunus persica HOM05D004799 ORTHO05D005500 6.0e-27 124.8 160 55.0
Gohir.D02G232500 Gossypium hirsutum HOM05D004799 ORTHO05D005500 1.0e-26 124.0 156 56.4
Gorai.005G260300 Gossypium raimondii HOM05D004799 ORTHO05D005500 3.0e-26 122.5 156 55.8
Aqoxy6G00151 Aquilegia oxysepala HOM05D004799 ORTHO05D005500 3.9e-26 122.1 157 54.1
Psat1g220000 Pisum sativum HOM05D004799 ORTHO05D005500 3.9e-26 122.1 150 52.7
Lalb_Chr12g0204381 Lupinus albus HOM05D004799 ORTHO05D005500 5.1e-26 121.7 164 51.2
Sabra01G0161300 Salix brachista HOM05D004799 ORTHO05D005500 6.7e-26 121.3 169 52.1
Glyma.08G128300 Glycine max HOM05D004799 ORTHO05D005500 1.1e-25 120.6 148 54.1
TWI59G1038 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 2.5e-25 119.4 168 51.8
unitig_26.g9556 Utricularia gibba HOM05D004799 ORTHO05D005500 2.5e-25 119.4 158 50.6
Atru.chr6.1081 Acer truncatum HOM05D004799 ORTHO05D005500 3.3e-25 119.0 148 54.7
RcHm_v2.0_Chr7g0224271 Rosa chinensis HOM05D004799 ORTHO05D005500 5.6e-25 118.2 159 55.3
HanXRQChr03g0066881 Helianthus annuus HOM05D004799 ORTHO05D005500 7.4e-25 117.9 154 50.6
AUR62018552 Chenopodium quinoa HOM05D004799 ORTHO05D005500 9.6e-25 117.5 149 54.4
QL02p098623 Quercus lobata HOM05D004799 ORTHO05D005500 9.6e-25 117.5 187 47.1
Carub.0001s1103 Capsella rubella HOM05D004799 ORTHO05D005500 1.4e-23 113.6 157 50.3
ClCG09G016220 Citrullus lanatus HOM05D004799 ORTHO05D005500 1.4e-23 113.6 158 51.9
THA.LOC104809537 Tarenaya hassleriana HOM05D004799 ORTHO05D005500 1.4e-23 113.6 158 50.0
CiPaw.05G042800 Carya illinoinensis HOM05D004799 ORTHO05D005500 2.4e-23 112.8 202 47.0
AUR62020867 Chenopodium quinoa HOM05D004799 ORTHO05D005500 2.4e-23 112.8 149 52.3
Sc14g0006850 Simmondsia chinensis HOM05D004799 ORTHO05D005500 2.4e-23 112.8 159 49.1
Nitab4.5_0005539g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 2.6e-22 109.4 156 46.2
Lj9C308T7 Lonicera japonica HOM05D004799 ORTHO05D005500 4.5e-22 108.6 138 53.6
VMungo0251G3647 Vigna mungo HOM05D004799 ORTHO05D005500 5.8e-22 108.2 148 51.4
Ca_00089_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 9.9e-22 107.5 192 42.2
Ca_29928_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 9.9e-22 107.5 192 42.2
Rhsim11G0131600 Rhododendron simsii HOM05D004799 ORTHO05D005500 9.9e-22 107.5 260 35.0
A08p33480 Brassica napus HOM05D004799 ORTHO05D005500 1.3e-21 107.1 147 52.4
CsaV3_5G024750 Cucumis sativus L. HOM05D004799 ORTHO05D005500 1.3e-21 107.1 157 47.8
CsaV3_7G007080 Cucumis sativus L. HOM05D004799 ORTHO05D005500 1.3e-21 107.1 155 48.4
BraA08t35264Z Brassica rapa HOM05D004799 ORTHO05D005500 2.2e-21 106.3 147 51.7
SalBow6G1776 Salvia bowleyana HOM05D004799 ORTHO05D005500 2.2e-21 106.3 160 46.9
SalBow6G5744 Salvia bowleyana HOM05D004799 ORTHO05D005500 2.2e-21 106.3 160 46.9
MELO3C018586.2 Cucumis melo HOM05D004799 ORTHO05D005500 2.9e-21 105.9 156 48.7
Lsat_1_v5_gn_7_77960 Lactuca sativa HOM05D004799 ORTHO05D005500 8.4e-21 104.4 148 50.7
Aa31LG1G3310 Aethionema arabicum HOM05D004799 ORTHO05D005500 1.1e-20 104.0 158 46.2
DCAR_005625 Daucus carota HOM05D004799 ORTHO05D005500 1.1e-20 104.0 157 45.2
Phvul.002G251000 Phaseolus vulgaris HOM05D004799 ORTHO05D005500 1.4e-20 103.6 146 50.0
Ah.04g149450 Amaranthus hybridus HOM05D004799 ORTHO05D005500 3.2e-20 102.4 166 50.0
EL10Ac3g07450 Beta vulgaris HOM05D004799 ORTHO05D005500 5.5e-20 101.7 151 50.3
CSS0024882 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 5.5e-20 101.7 111 55.0
CSS0037217 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 5.5e-20 101.7 111 55.0
ATR0684G092 Amborella trichopoda HOM05D004799 ORTHO05D005500 1.2e-19 100.5 166 46.4
AL1G22490 Arabidopsis lyrata HOM05D004799 ORTHO05D005500 1.2e-19 100.5 145 47.6
CARHR011640 Cardamine hirsuta HOM05D004799 ORTHO05D005500 2.7e-19 99.4 151 49.0
Sp1g10030 Schrenkiella parvula HOM05D004799 ORTHO05D005500 2.7e-19 99.4 154 47.4
Hund19012 Selenicereus undatus HOM05D004799 ORTHO05D005500 3.5e-19 99.0 162 51.9
C08p14470 Brassica napus HOM05D004799 ORTHO05D005500 6.0e-19 98.2 147 48.3
Zm00001eb011470 Zea mays HOM05D004799 ORTHO05D005500 1.0e-18 97.4 157 49.7
AT1G11400 Arabidopsis thaliana HOM05D004799 ORTHO05D005500 1.8e-18 96.7 145 46.2
BcaC07g38663 Brassica carinata HOM05D004799 ORTHO05D005500 2.3e-18 96.3 147 47.6
BolC8t49096H Brassica oleracea HOM05D004799 ORTHO05D005500 2.3e-18 96.3 147 47.6
Glyma.05G170200 Glycine max HOM05D004799 ORTHO05D005500 3.0e-18 95.9 152 47.4
Zm00001eb398170 Zea mays HOM05D004799 ORTHO05D005500 3.9e-18 95.5 156 47.4
HPP92_019221 Vanilla planifolia HOM05D004799 ORTHO05D005500 6.7e-18 94.7 152 49.3
Actinidia39055 Actinidia chinensis HOM05D004799 ORTHO05D005500 8.7e-18 94.4 111 55.9
BcaB03g13259 Brassica carinata HOM05D004799 ORTHO05D005500 1.5e-17 93.6 154 44.8
CANSAT11G1940 Cannabis sativa HOM05D004799 ORTHO05D005500 1.5e-17 93.6 173 43.9
Atru.chr6.1045 Acer truncatum HOM05D004799 ORTHO05D005500 3.3e-17 92.4 125 49.6
Sed0004816 Sechium edule HOM05D004799 ORTHO05D005500 7.4e-17 91.3 165 41.2
Thecc.02G041200 Theobroma cacao HOM05D004799 ORTHO05D005500 7.4e-17 91.3 160 45.6
FAN08G0327 Fragaria x ananassa HOM05D004799 ORTHO05D005500 9.6e-17 90.9 159 47.8
Os03g0262100 Oryza sativa ssp. japonica HOM05D004799 ORTHO05D005500 1.3e-16 90.5 145 44.1
TWI23G0644 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 2.8e-16 89.4 165 43.0
COL.COLO4_17895 Corchorus olitorius HOM05D004799 ORTHO05D005500 6.2e-16 88.2 130 50.0
CDE02G4357 Ceratophyllum demersum HOM05D004799 ORTHO05D005500 1.8e-15 86.7 164 40.2
ECA240G2283 Erigeron canadensis HOM05D004799 ORTHO05D005500 5.3e-15 85.1 152 44.7
Nn5g28066 Nelumbo nucifera HOM05D004799 ORTHO05D005500 4.5e-14 82.0 114 45.6
MBI03_g11149_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 5.8e-14 81.6 243 33.7
PSO528G0257 Papaver somniferum HOM05D004799 ORTHO05D005500 3.8e-13 79.0 152 44.1
GSVIVG01013911001 Vitis vinifera HOM05D004799 ORTHO05D005500 2.5e-12 76.3 96 50.0
MBI03_g11127_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 3.2e-12 75.9 102 48.0
A06p08020 Brassica napus HOM05D004799 ORTHO05D005500 2.1e-11 73.2 155 40.0
BraA06t24001Z Brassica rapa HOM05D004799 ORTHO05D005500 2.1e-11 73.2 155 40.0
BcaC05g25015 Brassica carinata HOM05D004799 ORTHO05D005500 4.6e-11 72.0 155 41.3
C05p09620 Brassica napus HOM05D004799 ORTHO05D005500 4.6e-11 72.0 155 41.3
BolC5t29704H Brassica oleracea HOM05D004799 ORTHO05D005500 4.6e-11 72.0 155 41.3
Thhalv10008698m.g Eutrema salsugineum HOM05D004799 ORTHO05D005500 3.0e-10 69.3 157 36.3
Glyma.14G170300 Glycine max HOM05D004799 ORTHO05D005500 5.1e-10 68.6 104 51.0
Pp3c4_27250 Physcomitrium patens HOM05D004799 ORTHO05D005500 8.7e-10 67.8 143 41.3
CSS0012117 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 3.1e-07 59.3 45 68.9
CSS0018254 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 6.9e-07 58.2 45 68.9
Ah.13g077920 Amaranthus hybridus HOM05D004799 ORTHO05D005500 9.0e-07 57.8 55 63.6
Ah.13g066130 Amaranthus hybridus HOM05D004799 ORTHO05D005500 3.4e-06 55.8 50 66.0
BcaB03g13258 Brassica carinata HOM05D004799 ORTHO05D005500 3.4e-06 55.8 92 42.4
PSO170G0171 Papaver somniferum HOM05D004799 ORTHO05D005500 4.5e-06 55.5 152 36.8


User provided reference genes

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