Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 5.3e-198 694.1 344 100.0
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 7.8e-165 583.9 346 83.8
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 3.1e-161 572.0 347 83.3
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 4.1e-158 561.6 346 81.2
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 4.3e-155 551.6 344 81.1
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 1.2e-152 543.5 344 78.5
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 5.8e-152 541.2 373 74.5
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 3.0e-148 528.9 330 77.9
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.1e-146 522.7 342 75.7
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 8.1e-146 520.8 330 76.4
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 1.5e-144 516.5 340 73.8
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 2.6e-144 515.8 344 74.4
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 7.6e-144 514.2 344 75.3
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 9.9e-144 513.8 337 74.8
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 2.9e-143 512.3 337 75.1
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 2.4e-142 509.2 333 74.8
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 5.4e-142 508.1 341 73.9
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 5.4e-142 508.1 324 75.3
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 5.4e-142 508.1 340 73.5
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 9.3e-142 507.3 335 75.5
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 9.3e-142 507.3 340 73.5
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.2e-141 506.9 337 74.2
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 1.6e-141 506.5 345 74.2
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 2.1e-141 506.1 334 72.5
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 1.3e-140 503.4 326 74.5
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 8.7e-140 500.7 329 75.1
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 1.1e-139 500.4 323 74.6
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 1.5e-139 500.0 327 74.0
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 1.5e-139 500.0 335 71.9
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 1.9e-139 499.6 330 73.3
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 4.3e-139 498.4 336 72.6
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 5.6e-139 498.0 329 72.0
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 9.6e-139 497.3 327 74.9
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 1.6e-138 496.5 358 70.7
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 2.1e-138 496.1 324 74.4
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 2.1e-138 496.1 325 73.5
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 3.6e-138 495.4 334 71.9
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 3.6e-138 495.4 323 73.4
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 4.8e-138 495.0 327 73.7
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 6.2e-138 494.6 323 76.2
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 6.2e-138 494.6 331 72.2
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 1.4e-137 493.4 322 75.5
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 1.4e-137 493.4 333 72.1
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 1.4e-137 493.4 333 72.1
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 1.8e-137 493.0 338 72.5
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 1.8e-137 493.0 335 70.7
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 3.1e-137 492.3 323 73.4
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 5.3e-137 491.5 327 74.6
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 5.3e-137 491.5 337 72.4
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 5.3e-137 491.5 342 73.4
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 6.9e-137 491.1 325 74.8
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 9.0e-137 490.7 333 73.0
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 9.0e-137 490.7 360 69.2
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 1.2e-136 490.3 309 79.0
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 1.5e-136 490.0 323 74.0
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 3.4e-136 488.8 331 74.0
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 7.6e-136 487.6 328 73.5
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 9.9e-136 487.3 329 71.4
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 1.3e-135 486.9 352 68.8
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 6.4e-135 484.6 330 71.8
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 8.4e-135 484.2 331 71.9
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 8.4e-135 484.2 322 72.7
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 1.1e-134 483.8 331 71.6
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 1.1e-134 483.8 374 67.4
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 2.4e-134 482.6 330 71.5
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 3.2e-134 482.3 328 71.6
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 5.4e-134 481.5 328 72.9
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 7.1e-134 481.1 327 72.2
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 9.3e-134 480.7 324 72.5
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 1.6e-133 479.9 324 72.5
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 2.1e-133 479.6 329 71.4
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 3.5e-133 478.8 315 74.6
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 6.0e-133 478.0 329 71.1
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 6.0e-133 478.0 329 72.0
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 1.0e-132 477.2 328 70.7
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 1.0e-132 477.2 338 70.1
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 1.0e-132 477.2 317 73.2
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 1.8e-132 476.5 329 70.5
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 5.1e-132 474.9 313 74.4
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 6.7e-132 474.6 328 71.6
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 1.1e-131 473.8 323 72.1
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 1.9e-131 473.0 326 69.9
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 1.9e-131 473.0 329 70.5
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 2.5e-131 472.6 329 70.5
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 2.5e-131 472.6 349 67.0
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 3.3e-131 472.2 327 70.6
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 4.3e-131 471.9 324 70.7
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 9.6e-131 470.7 360 66.1
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 1.6e-130 469.9 335 70.7
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 2.1e-130 469.5 324 70.7
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 2.1e-130 469.5 328 70.7
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 2.1e-130 469.5 330 70.3
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 2.1e-130 469.5 329 69.9
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 4.8e-130 468.4 307 77.5
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 8.1e-130 467.6 334 68.6
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 1.1e-129 467.2 335 68.4
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 1.8e-129 466.5 352 66.8
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 1.8e-129 466.5 331 68.9
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 2.4e-129 466.1 311 72.7
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 5.3e-129 464.9 325 68.6
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 9.0e-129 464.2 326 69.3
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.2e-128 463.8 307 73.9
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 2.6e-128 462.6 327 70.0
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 5.8e-128 461.5 318 71.7
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 5.8e-128 461.5 318 71.4
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 3.8e-127 458.8 323 70.3
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 4.9e-127 458.4 330 68.2
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 6.5e-127 458.0 305 75.1
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 8.4e-127 457.6 325 69.2
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 8.4e-127 457.6 337 68.2
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 8.4e-127 457.6 327 68.8
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 4.2e-126 455.3 321 70.4
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 9.3e-126 454.1 337 67.7
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 5.1e-124 448.4 335 68.7
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 1.1e-123 447.2 338 68.6
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 2.5e-123 446.0 383 60.8
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 2.5e-123 446.0 335 67.5
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 5.7e-123 444.9 323 68.7
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 5.7e-123 444.9 337 67.4
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 9.6e-123 444.1 322 68.6
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 1.1e-121 440.7 338 66.3
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 1.1e-118 430.6 340 65.0
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 2.3e-116 422.9 265 76.6
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 3.3e-115 419.1 319 65.8
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 9.7e-115 417.5 310 68.1
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 2.6e-112 409.5 539 45.3
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 4.6e-109 398.7 333 63.1
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 9.7e-107 391.0 258 73.6
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 4.8e-106 388.7 328 61.6
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 6.9e-105 384.8 265 72.1
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 1.3e-103 380.6 261 73.6
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 2.9e-95 352.8 325 55.7
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 7.2e-94 348.2 320 55.9
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 2.6e-91 339.7 208 79.8
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 7.5e-91 338.2 232 71.6
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.1e-89 334.3 206 78.6
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 1.1e-89 334.3 215 71.2
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 9.1e-89 331.3 283 61.8
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 1.5e-86 323.9 290 56.2
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.0e-84 317.8 216 72.7
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 4.8e-82 308.9 216 71.3
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 2.4e-81 306.6 267 61.4
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 1.7e-66 257.3 162 76.5
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 1.1e-65 254.6 375 41.3
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 7.0e-65 251.9 172 72.1
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 1.6e-64 250.8 161 75.8
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 6.6e-63 245.4 160 75.6
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 3.2e-57 226.5 167 67.7
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 7.8e-56 221.9 162 70.4
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 8.6e-55 218.4 213 55.4
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 3.7e-50 203.0 252 46.8
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 1.8e-44 184.1 119 73.9
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 1.5e-43 181.0 339 38.6
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 2.1e-40 170.6 193 47.7
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 3.1e-36 156.8 114 69.3
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 1.0e-31 141.7 291 35.7
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 2.0e-27 127.5 385 30.9
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 9.9e-27 125.2 108 58.3
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 2.2e-26 124.0 276 31.9
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.2e-24 118.2 128 50.0
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 2.1e-24 117.5 62 88.7
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 3.1e-20 103.6 64 73.4
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 4.9e-18 96.3 57 78.9
DCAR_009744 Daucus carota HOM05D004315 ORTHO05D018839 6.7e-15 85.9 83 53.0
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 1.5e-14 84.7 63 60.3
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 3.7e-13 80.1 56 71.4
Ah.03g146620 Amaranthus hybridus HOM05D004315 ORTHO05D005089 4.0e-12 76.6 55 67.3
CDE04G1567 Ceratophyllum demersum HOM05D001307 ORTHO05D005089 6.7e-07 59.3 59 52.5


User provided reference genes

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