Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.16125 Avicennia marina HOM05D004098 ORTHO05D005215 0.0e+00 1247.3 746 100.0
SalBow8G2465 Salvia bowleyana HOM05D004098 ORTHO05D005215 7.8e-295 1016.9 762 80.7
Oeu052018.2 Olea europaea HOM05D004098 ORTHO05D005215 3.9e-294 1014.6 770 77.9
Migut.M01572 Erythranthe guttata HOM05D004098 ORTHO05D005215 3.9e-286 988.0 748 82.1
Peaxi162Scf00018g00064 Petunia axillaris HOM05D004098 ORTHO05D005215 3.7e-268 928.3 783 71.3
Rhsim04G0006500 Rhododendron simsii HOM05D004098 ORTHO05D005215 6.9e-267 924.1 793 60.7
Cc05_g15840 Coffea canephora HOM05D004098 ORTHO05D005215 9.3e-264 913.7 758 74.0
Dinv19633 Davidia involucrata HOM05D004098 ORTHO05D005215 3.5e-263 911.8 772 72.5
PGSC0003DMG400011237 Solanum tuberosum HOM05D004098 ORTHO05D005215 1.9e-261 906.0 748 74.6
unitig_749.g13703 Utricularia gibba HOM05D004098 ORTHO05D005215 4.8e-260 901.4 771 72.5
Actinidia37106 Actinidia chinensis HOM05D004098 ORTHO05D005215 1.1e-259 900.2 753 72.4
Solyc10g005650.3 Solanum lycopersicum HOM05D004098 ORTHO05D005215 2.6e-258 895.6 748 74.1
Sopen10g001620 Solanum pennellii HOM05D004098 ORTHO05D005215 7.6e-258 894.0 748 74.1
DCAR_019936 Daucus carota HOM05D004098 ORTHO05D005215 1.6e-255 886.3 786 61.5
Nitab4.5_0000611g0190 Nicotiana tabacum HOM05D004098 ORTHO05D005215 3.5e-255 885.2 783 60.2
Lj8C185G3 Lonicera japonica HOM05D004098 ORTHO05D005215 7.9e-255 884.0 842 65.4
HanXRQChr05g0160701 Helianthus annuus HOM05D004098 ORTHO05D005215 2.2e-252 875.9 748 74.5
Dinv42526 Davidia involucrata HOM05D004098 ORTHO05D005215 8.2e-252 874.0 635 68.5
DCAR_016814 Daucus carota HOM05D004098 ORTHO05D005215 1.2e-250 870.2 773 69.3
Potri.011G170000 Populus trichocarpa HOM05D004098 ORTHO05D005215 1.3e-249 866.7 752 71.4
MSTRG.7048 Avicennia marina HOM05D004098 ORTHO05D005215 3.8e-249 865.1 746 73.1
Manes.01G008000 Manihot esculenta HOM05D004098 ORTHO05D005215 9.4e-248 860.5 752 71.5
SGA_v2.0_scaffold7G03562 Striga asiatica HOM05D004098 ORTHO05D005215 2.1e-247 859.4 808 70.2
Ciclev10007566m.g Citrus clementina HOM05D004098 ORTHO05D005215 2.7e-247 859.0 753 71.6
Nitab4.5_0004488g0010 Nicotiana tabacum HOM05D004098 ORTHO05D005215 1.1e-243 847.0 795 67.0
Prupe.6G036900 Prunus persica HOM05D004098 ORTHO05D005215 5.3e-243 844.7 752 70.3
Lsat_1_v5_gn_5_241 Lactuca sativa HOM05D004098 ORTHO05D005215 7.7e-242 840.9 762 71.0
CAN.G492.64 Capsicum annuum HOM05D004098 ORTHO05D005215 3.2e-240 835.5 747 69.2
Hma1.2p1_0321F.1_g124430 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 5.5e-240 834.7 748 70.2
Cfa016972 Carpinus fangiana HOM05D004098 ORTHO05D005215 1.2e-239 833.6 775 68.8
ECA246G1615 Erigeron canadensis HOM05D004098 ORTHO05D005215 2.3e-238 829.3 746 72.4
COL.COLO4_07798 Corchorus olitorius HOM05D004098 ORTHO05D005215 5.1e-238 828.2 743 69.6
TAR626G1397 Trochodendron aralioides HOM05D004098 ORTHO05D005215 8.8e-238 827.4 762 68.8
CiPaw.11G211200 Carya illinoinensis HOM05D004098 ORTHO05D005215 1.5e-237 826.6 776 68.8
TWI14G0432 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 2.6e-237 825.9 751 69.6
TWI39G0299 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 2.6e-237 825.9 751 69.6
Potri.001G473100 Populus trichocarpa HOM05D004098 ORTHO05D005215 1.7e-236 823.2 753 69.9
PGR083G2418 Punica granatum HOM05D004098 ORTHO05D005215 1.7e-236 823.2 748 68.4
Manes.05G203450 Manihot esculenta HOM05D004098 ORTHO05D005215 1.2e-234 817.0 756 68.9
Aqoxy4G02276 Aquilegia oxysepala HOM05D004098 ORTHO05D005215 1.5e-234 816.6 764 67.9
GSVIVG01014864001 Vitis vinifera HOM05D004098 ORTHO05D005215 2.0e-234 816.2 753 70.0
MD11G1047800 Malus domestica HOM05D004098 ORTHO05D005215 5.9e-234 814.7 752 68.5
Nn2g14376 Nelumbo nucifera HOM05D004098 ORTHO05D005215 2.2e-233 812.8 776 67.4
MD03G1045600 Malus domestica HOM05D004098 ORTHO05D005215 6.5e-233 811.2 752 68.2
Sc03g0011840 Simmondsia chinensis HOM05D004098 ORTHO05D005215 3.2e-232 808.9 759 66.8
PSO675G3414 Papaver somniferum HOM05D004098 ORTHO05D005215 9.4e-232 807.4 762 67.7
PSO541G4185 Papaver somniferum HOM05D004098 ORTHO05D005215 1.2e-231 807.0 762 68.0
Atru.chr2.3913 Acer truncatum HOM05D004098 ORTHO05D005215 6.1e-231 804.7 650 65.1
CANSAT11G1316 Cannabis sativa HOM05D004098 ORTHO05D005215 1.1e-229 800.4 758 68.6
arahy.Tifrunner.gnm1.ann1.FI1VU9 Arachis hypogaea HOM05D004098 ORTHO05D005215 4.4e-229 798.5 753 70.0
THA.LOC104813473 Tarenaya hassleriana HOM05D004098 ORTHO05D005215 2.2e-228 796.2 751 70.0
Duzib268G0918 Durio zibethinus HOM05D004098 ORTHO05D005215 6.3e-228 794.7 768 66.7
Sabra11G0137000 Salix brachista HOM05D004098 ORTHO05D005215 1.4e-227 793.5 829 63.7
Glyma.04G116700 Glycine max HOM05D004098 ORTHO05D005215 2.4e-227 792.7 768 67.3
Phvul.005G006500 Phaseolus vulgaris HOM05D004098 ORTHO05D005215 3.1e-227 792.3 749 68.9
FAN21G3119 Fragaria x ananassa HOM05D004098 ORTHO05D005215 4.1e-227 792.0 752 67.7
FAN16G0876 Fragaria x ananassa HOM05D004098 ORTHO05D005215 1.6e-226 790.0 752 67.8
FvH4_3g41350 Fragaria vesca HOM05D004098 ORTHO05D005215 3.5e-226 788.9 752 68.1
FAN11G1160 Fragaria x ananassa HOM05D004098 ORTHO05D005215 4.5e-226 788.5 752 68.1
arahy.Tifrunner.gnm1.ann1.36GALV Arachis hypogaea HOM05D004098 ORTHO05D005215 5.9e-226 788.1 779 66.5
VMungo1080G0600 Vigna mungo HOM05D004098 ORTHO05D005215 5.9e-226 788.1 749 68.6
CSS0008075 Camellia sinensis var. sinensis HOM05D004098 ORTHO05D005215 1.7e-225 786.6 681 73.7
Lj3g0001916 Lotus japonicus HOM05D004098 ORTHO05D005215 1.5e-224 783.5 751 67.5
Medtr3g009230 Medicago truncatula HOM05D004098 ORTHO05D005215 1.5e-224 783.5 752 70.1
Psat5g230760 Pisum sativum HOM05D004098 ORTHO05D005215 5.5e-224 781.6 753 69.3
RcHm_v2.0_Chr5g0074241 Rosa chinensis HOM05D004098 ORTHO05D005215 1.6e-223 780.0 763 66.6
Glyma.06G320100 Glycine max HOM05D004098 ORTHO05D005215 2.7e-223 779.2 754 68.0
Eucgr.F01979 Eucalyptus grandis HOM05D004098 ORTHO05D005215 2.3e-222 776.2 751 66.6
FAN25G0546 Fragaria x ananassa HOM05D004098 ORTHO05D005215 6.8e-222 774.6 776 65.5
Gohir.A04G000400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 8.8e-222 774.2 750 67.1
Gohir.D05G388750 Gossypium hirsutum HOM05D004098 ORTHO05D005215 8.8e-222 774.2 750 67.2
Gorai.009G455400 Gossypium raimondii HOM05D004098 ORTHO05D005215 1.5e-221 773.5 751 67.2
AL8G31920 Arabidopsis lyrata HOM05D004098 ORTHO05D005215 2.0e-221 773.1 749 67.7
Gohir.D05G388800 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.4e-221 771.9 751 67.1
Thecc.07G000300 Theobroma cacao HOM05D004098 ORTHO05D005215 9.8e-221 770.8 749 66.8
CARHR269690 Cardamine hirsuta HOM05D004098 ORTHO05D005215 7.0e-219 764.6 749 66.5
AT5G56290 Arabidopsis thaliana HOM05D004098 ORTHO05D005215 1.7e-217 760.0 748 67.2
BcaB01g04390 Brassica carinata HOM05D004098 ORTHO05D005215 1.5e-216 756.9 750 66.8
Ca_14121_v3 Cicer arietinum L. HOM05D004098 ORTHO05D005215 1.5e-216 756.9 752 68.9
TPR.G16705 Trifolium pratense HOM05D004098 ORTHO05D005215 3.2e-216 755.7 636 65.3
Lalb_Chr15g0079811 Lupinus albus HOM05D004098 ORTHO05D005215 3.6e-215 752.3 775 65.7
Thhalv10012791m.g Eutrema salsugineum HOM05D004098 ORTHO05D005215 4.7e-215 751.9 750 66.8
BolC3t14019H Brassica oleracea HOM05D004098 ORTHO05D005215 1.8e-214 750.0 777 64.1
AUR62043123 Chenopodium quinoa HOM05D004098 ORTHO05D005215 2.3e-214 749.6 748 64.4
C03p15880 Brassica napus HOM05D004098 ORTHO05D005215 4.0e-214 748.8 751 66.3
Lalb_Chr18g0048751 Lupinus albus HOM05D004098 ORTHO05D005215 1.5e-213 746.9 761 65.3
Actinidia35440 Actinidia chinensis HOM05D004098 ORTHO05D005215 2.6e-213 746.1 769 53.4
QL08p000136 Quercus lobata HOM05D004098 ORTHO05D005215 4.4e-213 745.3 781 64.1
Carub.0008s1661 Capsella rubella HOM05D004098 ORTHO05D005215 5.7e-213 745.0 748 66.8
BraA10t43460Z Brassica rapa HOM05D004098 ORTHO05D005215 1.2e-210 737.3 786 62.8
BraA03t10663Z Brassica rapa HOM05D004098 ORTHO05D005215 1.6e-210 736.9 778 56.8
A03p13590 Brassica napus HOM05D004098 ORTHO05D005215 1.0e-209 734.2 750 65.9
CsaV3_3G003580 Cucumis sativus L. HOM05D004098 ORTHO05D005215 2.3e-209 733.0 755 66.4
MELO3C014028.2 Cucumis melo HOM05D004098 ORTHO05D005215 1.1e-208 730.7 760 65.8
BcaC01g06414 Brassica carinata HOM05D004098 ORTHO05D005215 1.9e-208 729.9 752 65.8
A10p13580 Brassica napus HOM05D004098 ORTHO05D005215 7.2e-208 728.0 748 65.9
Aa31LG3G12200 Aethionema arabicum HOM05D004098 ORTHO05D005215 9.5e-208 727.6 749 64.9
BolC9t57610H Brassica oleracea HOM05D004098 ORTHO05D005215 3.6e-207 725.7 755 65.6
Sp6g18140 Schrenkiella parvula HOM05D004098 ORTHO05D005215 8.0e-207 724.5 750 65.3
ClCG10G003580 Citrullus lanatus HOM05D004098 ORTHO05D005215 2.6e-197 693.0 861 57.8
C09p47570 Brassica napus HOM05D004098 ORTHO05D005215 2.4e-195 686.4 751 64.2
EL10Ac4g07494 Beta vulgaris HOM05D004098 ORTHO05D005215 3.0e-193 679.5 758 61.7
Haze_09929 Corylus avellana HOM05D004098 ORTHO05D005215 3.1e-190 669.5 798 59.8
BcaB05g22257 Brassica carinata HOM05D004098 ORTHO05D005215 6.0e-186 655.2 800 57.5
BcaC04g20111 Brassica carinata HOM05D004098 ORTHO05D005215 5.4e-179 632.1 751 57.9
Hma1.2p1_0321F.1_g124440 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 3.6e-175 619.4 548 72.6
ATR0751G081 Amborella trichopoda HOM05D004098 ORTHO05D005215 4.0e-174 615.9 727 60.7
Sed0000599 Sechium edule HOM05D004098 ORTHO05D005215 1.3e-169 600.9 586 57.8
Mapoly0064s0022 Marchantia polymorpha HOM05D004098 ORTHO05D005215 9.9e-165 584.7 768 56.9
ClCG00G000320 Citrullus lanatus HOM05D004098 ORTHO05D005215 3.6e-159 566.2 1249 40.6
Os08g0500100 Oryza sativa ssp. japonica HOM05D004098 ORTHO05D005215 4.9e-156 555.8 766 56.1
Pp3c14_5170 Physcomitrium patens HOM05D004098 ORTHO05D005215 2.4e-155 553.5 772 54.8
HPP92_017855 Vanilla planifolia HOM05D004098 ORTHO05D005215 3.0e-153 546.6 449 62.6
vmacro09792 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 7.4e-152 542.0 534 54.3
Zm00001eb199560 Zea mays HOM05D004098 ORTHO05D005215 1.9e-144 517.3 762 55.1
SMO361G0081 Selaginella moellendorffii HOM05D004098 ORTHO05D005215 2.1e-143 513.8 769 54.6
Zm00001eb034080 Zea mays HOM05D004098 ORTHO05D005215 1.7e-140 504.2 759 53.5
SEGI_20896 Sequoiadendron giganteum HOM05D004098 ORTHO05D005215 1.5e-128 464.5 440 58.9
CBR_g45681 Chara braunii HOM05D004098 ORTHO05D005215 5.2e-113 412.9 592 43.2
AUR62017765 Chenopodium quinoa HOM05D004098 ORTHO05D005215 7.7e-109 399.1 381 54.9
Ah.04g164860 Amaranthus hybridus HOM05D004098 ORTHO05D005215 4.5e-101 373.2 344 80.5
CDE05G2641 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 3.0e-97 360.5 346 78.3
AUR62017764 Chenopodium quinoa HOM05D004098 ORTHO05D005215 8.8e-97 359.0 383 72.8
vmacro09791 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 7.7e-93 345.9 304 86.8
Ah.04g164850 Amaranthus hybridus HOM05D000499 ORTHO05D002036 3.6e-90 337.0 376 49.7
CDE05G2368 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 1.5e-83 315.1 339 52.8
Cre14.g616750 Chlamydomonas reinhardtii HOM05D004098 ORTHO05D005215 9.8e-72 275.8 748 31.6
Cpa.g.sc12.52 Carica papaya HOM05D004098 ORTHO05D005215 2.4e-70 271.2 200 65.5
MCO05G026 Micromonas commoda HOM05D004098 ORTHO05D005215 8.9e-65 252.7 885 37.9
Gohir.A13G000950 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.6e-64 251.1 267 52.4
BolC2t07653H Brassica oleracea HOM05D004098 ORTHO05D005215 3.0e-60 237.7 491 35.8
Gohir.A04G000600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.7e-55 221.9 141 73.0
PRCOL_00000784 Prasinoderma coloniale HOM05D004098 ORTHO05D005215 1.9e-54 218.4 694 30.0
Cpa.g.sc12.51 Carica papaya HOM05D004098 ORTHO05D005215 9.0e-49 199.5 142 69.7
C02p15370 Brassica napus HOM05D004098 ORTHO05D005215 4.6e-45 187.2 485 31.8
Gohir.A06G201500 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.3e-39 169.1 116 75.9
Gohir.A03G000002 Gossypium hirsutum HOM05D004098 ORTHO05D005215 8.7e-36 156.4 235 42.6
Gohir.1Z049490 Gossypium hirsutum HOM05D004098 ORTHO05D005215 6.2e-34 150.2 92 79.3
Hma1.2p1_0321F.1_g124420 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 1.8e-33 148.7 153 55.6
Gorai.009G455200 Gossypium raimondii HOM05D004098 ORTHO05D005215 3.4e-32 144.4 235 40.4
Lsat_1_v5_gn_8_35540 Lactuca sativa HOM05D004098 ORTHO05D005215 1.3e-31 142.5 211 44.1
Gohir.A08G253600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.1e-30 139.4 82 84.1
Gohir.A11G000300 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.5e-30 138.3 84 82.1
Gohir.A12G000850 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.6e-29 134.0 130 54.6
Gohir.A01G000401 Gossypium hirsutum HOM05D004098 ORTHO05D005215 7.9e-29 133.3 82 75.6
Lsat_1_v5_gn_6_79681 Lactuca sativa HOM05D004098 ORTHO05D005215 1.8e-28 132.1 151 48.3
Lsat_1_v5_gn_8_153381 Lactuca sativa HOM05D004098 ORTHO05D005215 5.1e-28 130.6 140 51.4
Gohir.A03G000007 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.6e-26 125.6 80 73.8
MBI15_g32219_MAGBIO Magnolia biondii HOM05D004098 ORTHO05D005215 2.6e-24 118.2 127 59.8
A02p09220 Brassica napus HOM05D004098 ORTHO05D005215 2.9e-23 114.8 93 64.5
Gohir.A05G415701 Gossypium hirsutum HOM05D002376 ORTHO05D004654 5.0e-23 114.0 70 78.6
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.5e-22 110.5 61 85.2
Gohir.D03G178425 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.2e-21 109.4 61 83.6
Lsat_1_v5_gn_2_71300 Lactuca sativa HOM05D004098 ORTHO05D005215 1.1e-19 102.8 92 57.6
HPP92_017856 Vanilla planifolia HOM05D004098 ORTHO05D005215 2.5e-19 101.7 139 44.6
Gohir.1Z049406 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.7e-19 100.5 97 54.6
Gohir.A07G135000 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.7e-18 97.8 60 78.3
Lsat_1_v5_gn_3_67900 Lactuca sativa HOM05D004098 ORTHO05D005215 2.0e-16 92.0 185 37.3
TPR.G8441 Trifolium pratense HOM05D004098 ORTHO05D021823 4.5e-16 90.9 154 89.0
Cpa.g.sc12.49 Carica papaya HOM05D004098 ORTHO05D021823 5.9e-16 90.5 155 87.7
Haze_09931 Corylus avellana HOM05D000997 ORTHO05D000828 6.5e-15 87.0 113 38.1
Lsat_1_v5_gn_9_105500 Lactuca sativa HOM05D004098 ORTHO05D001482 4.6e-13 80.9 90 51.1
Gohir.1Z049608 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.8e-10 70.9 47 57.4
Gohir.A03G081400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.4e-09 69.3 60 63.3
Gohir.A05G415601 Gossypium hirsutum HOM05D004098 ORTHO05D005215 6.9e-09 67.0 45 55.6
C02p15380 Brassica napus HOM05D004098 ORTHO05D005215 2.6e-08 65.1 146 37.7
Cfa024256 Carpinus fangiana HOM05D032100 ORTHO05D126575 4.5e-08 64.3 243 28.0
Hund01805 Selenicereus undatus HOM05D004098 ORTHO05D005215 7.2e-06 57.0 43 60.5


User provided reference genes

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