Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.15711 Avicennia marina HOM05D005837 ORTHO05D007594 3.8e-205 718.0 378 100.0
SalBow5G3973 Salvia bowleyana HOM05D005837 ORTHO05D007594 1.1e-159 567.0 332 89.2
SalBow5G4805 Salvia bowleyana HOM05D005837 ORTHO05D007594 1.1e-159 567.0 332 89.2
Migut.L00122 Erythranthe guttata HOM05D005837 ORTHO05D007594 7.3e-156 554.3 332 88.6
SGA_v2.0_scaffold34G13592 Striga asiatica HOM05D005837 ORTHO05D007594 2.6e-153 545.8 329 86.0
Sopen05g030040 Solanum pennellii HOM05D005837 ORTHO05D007594 3.5e-142 508.8 325 83.7
Solyc05g051590.3 Solanum lycopersicum HOM05D005837 ORTHO05D007594 4.6e-142 508.4 325 83.4
GSVIVG01002467001 Vitis vinifera HOM05D005837 ORTHO05D007594 4.6e-142 508.4 332 81.0
PGSC0003DMG400007222 Solanum tuberosum HOM05D005837 ORTHO05D007594 7.8e-142 507.7 325 83.4
Thecc.01G101500 Theobroma cacao HOM05D005837 ORTHO05D007594 3.0e-141 505.8 310 83.5
Gohir.D11G221614 Gossypium hirsutum HOM05D005837 ORTHO05D007594 5.1e-141 505.0 332 79.2
CSS0040315 Camellia sinensis var. sinensis HOM05D005837 ORTHO05D007594 6.6e-141 504.6 320 82.5
HanXRQChr10g0305351 Helianthus annuus HOM05D005837 ORTHO05D007594 8.6e-141 504.2 310 81.9
Hma1.2p1_0047F.1_g027810 Hydrangea macrophylla HOM05D005837 ORTHO05D007594 8.6e-141 504.2 325 82.5
Rhsim08G0010400 Rhododendron simsii HOM05D005837 ORTHO05D007594 8.6e-141 504.2 325 80.3
Gorai.007G238700 Gossypium raimondii HOM05D005837 ORTHO05D007594 1.1e-140 503.8 332 78.9
Gohir.D11G055600 Gossypium hirsutum HOM05D005837 ORTHO05D007594 3.3e-140 502.3 325 79.4
Duzib147G0987 Durio zibethinus HOM05D005837 ORTHO05D007594 4.3e-140 501.9 324 80.6
unitig_32.g10697 Utricularia gibba HOM05D005837 ORTHO05D007594 5.6e-140 501.5 332 78.3
Gohir.A11G201400 Gossypium hirsutum HOM05D005837 ORTHO05D007594 9.5e-140 500.7 332 78.6
Gorai.007G060800 Gossypium raimondii HOM05D005837 ORTHO05D007594 9.5e-140 500.7 325 78.8
Duzib264G0353 Durio zibethinus HOM05D005837 ORTHO05D007594 1.2e-139 500.4 310 82.6
Nn5g30122 Nelumbo nucifera HOM05D005837 ORTHO05D007594 2.8e-139 499.2 320 81.2
VMungo0251G2060 Vigna mungo HOM05D005837 ORTHO05D007594 2.8e-139 499.2 346 74.9
Prupe.6G187000 Prunus persica HOM05D005837 ORTHO05D007594 8.1e-139 497.7 319 78.7
TAR376G0564 Trochodendron aralioides HOM05D005837 ORTHO05D007594 1.4e-138 496.9 323 79.6
Phvul.002G256000 Phaseolus vulgaris HOM05D005837 ORTHO05D007594 1.2e-137 493.8 325 78.2
CANSAT01G1018 Cannabis sativa HOM05D005837 ORTHO05D007594 1.5e-137 493.4 323 78.3
COL.COLO4_09964 Corchorus olitorius HOM05D005837 ORTHO05D007594 1.5e-137 493.4 328 78.4
TWI53G1711 Tripterygium wilfordii HOM05D005837 ORTHO05D007594 2.0e-137 493.0 334 76.6
Ca_17737_v3 Cicer arietinum L. HOM05D005837 ORTHO05D007594 2.6e-137 492.7 322 78.0
QL06p049517 Quercus lobata HOM05D005837 ORTHO05D007594 4.4e-137 491.9 330 76.4
Lj4g0008298 Lotus japonicus HOM05D005837 ORTHO05D007594 5.8e-137 491.5 322 78.3
Potri.005G075600 Populus trichocarpa HOM05D005837 ORTHO05D007594 5.8e-137 491.5 316 79.4
Glyma.08G135800 Glycine max HOM05D005837 ORTHO05D007594 1.7e-136 490.0 325 77.5
TPR.G6228 Trifolium pratense HOM05D005837 ORTHO05D007594 2.2e-136 489.6 322 77.3
Eucgr.H04785 Eucalyptus grandis HOM05D005837 ORTHO05D007594 3.8e-136 488.8 324 77.8
Actinidia28865 Actinidia chinensis HOM05D005837 ORTHO05D007594 4.9e-136 488.4 313 80.5
Aqoxy5G01893 Aquilegia oxysepala HOM05D005837 ORTHO05D007594 4.9e-136 488.4 332 75.0
TWI77G0214 Tripterygium wilfordii HOM05D005837 ORTHO05D007594 6.4e-136 488.0 333 78.4
Ciclev10025805m.g Citrus clementina HOM05D005837 ORTHO05D007594 8.4e-136 487.6 322 79.2
Sabra05G0062100 Salix brachista HOM05D005837 ORTHO05D007594 1.1e-135 487.3 316 79.4
PSO447G0182 Papaver somniferum HOM05D005837 ORTHO05D007594 1.4e-135 486.9 336 75.9
Atru.chr4.64 Acer truncatum HOM05D005837 ORTHO05D007594 1.9e-135 486.5 332 77.7
Carub.0008s2584 Capsella rubella HOM05D005837 ORTHO05D007594 1.9e-135 486.5 315 79.7
RcHm_v2.0_Chr2g0113501 Rosa chinensis HOM05D005837 ORTHO05D007594 2.4e-135 486.1 325 77.8
HanXRQChr09g0260241 Helianthus annuus HOM05D005837 ORTHO05D007594 3.2e-135 485.7 324 75.3
MD01G1029800 Malus domestica HOM05D005837 ORTHO05D007594 5.4e-135 485.0 322 77.0
PGR102G0026 Punica granatum HOM05D005837 ORTHO05D007594 5.4e-135 485.0 324 75.6
Sp2g28080 Schrenkiella parvula HOM05D005837 ORTHO05D007594 2.1e-134 483.0 320 77.5
Medtr8g090230 Medicago truncatula HOM05D005837 ORTHO05D007594 2.7e-134 482.6 313 77.3
PSO210G6484 Papaver somniferum HOM05D005837 ORTHO05D007594 2.7e-134 482.6 336 75.9
arahy.Tifrunner.gnm1.ann1.UTAL3L Arachis hypogaea HOM05D005837 ORTHO05D007594 3.5e-134 482.3 324 78.1
Lalb_Chr07g0185181 Lupinus albus HOM05D005837 ORTHO05D007594 3.5e-134 482.3 316 79.7
Ah.03g143560 Amaranthus hybridus HOM05D005837 ORTHO05D007594 4.6e-134 481.9 310 80.0
CSS0022010 Camellia sinensis var. sinensis HOM05D005837 ORTHO05D007594 6.0e-134 481.5 332 76.5
BraA09t36542Z Brassica rapa HOM05D005837 ORTHO05D007594 1.0e-133 480.7 308 79.5
FvH4_1g20890 Fragaria vesca HOM05D005837 ORTHO05D007594 1.7e-133 479.9 326 76.7
A09p08910 Brassica napus HOM05D005837 ORTHO05D007594 3.0e-133 479.2 321 76.6
MBI05_g19355_MAGBIO Magnolia biondii HOM05D005837 ORTHO05D007594 3.0e-133 479.2 327 76.5
THA.LOC104798971 Tarenaya hassleriana HOM05D005837 ORTHO05D007594 3.9e-133 478.8 308 79.5
DCAR_014225 Daucus carota HOM05D005837 ORTHO05D007594 6.6e-133 478.0 332 75.3
BolC9t53935H Brassica oleracea HOM05D005837 ORTHO05D007594 1.5e-132 476.9 322 77.3
Cfa002663 Carpinus fangiana HOM05D005837 ORTHO05D007594 1.5e-132 476.9 325 76.3
ATR0118G022 Amborella trichopoda HOM05D005837 ORTHO05D007594 1.9e-132 476.5 318 76.4
Thhalv10004589m.g Eutrema salsugineum HOM05D005837 ORTHO05D007594 1.9e-132 476.5 307 78.5
Nitab4.5_0000715g0030 Nicotiana tabacum HOM05D005837 ORTHO05D007594 1.9e-132 476.5 328 78.7
MD15G1324100 Malus domestica HOM05D005837 ORTHO05D007594 3.3e-132 475.7 331 74.6
BcaB02g09852 Brassica carinata HOM05D005837 ORTHO05D007594 4.3e-132 475.3 320 76.2
BcaB02g09853 Brassica carinata HOM05D005837 ORTHO05D007594 4.3e-132 475.3 320 76.2
BraA06t26113Z Brassica rapa HOM05D005837 ORTHO05D007594 4.3e-132 475.3 317 76.7
Sc16g0005040 Simmondsia chinensis HOM05D005837 ORTHO05D007594 4.3e-132 475.3 309 79.9
EL10Ac6g15104 Beta vulgaris HOM05D005837 ORTHO05D007594 5.6e-132 474.9 313 79.2
CARHR293770 Cardamine hirsuta HOM05D005837 ORTHO05D007594 7.3e-132 474.6 322 75.8
BcaC04g23271 Brassica carinata HOM05D005837 ORTHO05D007594 9.6e-132 474.2 322 76.7
C09p10350 Brassica napus HOM05D005837 ORTHO05D007594 9.6e-132 474.2 322 76.7
CiPaw.04G099500 Carya illinoinensis HOM05D005837 ORTHO05D007594 9.6e-132 474.2 316 76.9
AT5G65000 Arabidopsis thaliana HOM05D005837 ORTHO05D007594 2.1e-131 473.0 315 78.7
BcaB04g20002 Brassica carinata HOM05D005837 ORTHO05D007594 2.1e-131 473.0 320 75.6
A06p31820 Brassica napus HOM05D005837 ORTHO05D007594 2.1e-131 473.0 317 76.7
BcaC01g02731 Brassica carinata HOM05D005837 ORTHO05D007594 2.8e-131 472.6 309 78.0
C03p61190 Brassica napus HOM05D005837 ORTHO05D007594 2.8e-131 472.6 309 78.0
BolC3t18379H Brassica oleracea HOM05D005837 ORTHO05D007594 2.8e-131 472.6 309 78.0
Oeu053549.4 Olea europaea HOM05D005837 ORTHO05D007594 4.7e-131 471.9 330 76.4
Peaxi162Scf00295g01018 Petunia axillaris HOM05D005837 ORTHO05D007594 4.7e-131 471.9 325 78.8
Gohir.A11G052200 Gossypium hirsutum HOM05D005837 ORTHO05D007594 8.1e-131 471.1 325 75.4
AL8G42500 Arabidopsis lyrata HOM05D005837 ORTHO05D007594 1.4e-130 470.3 315 78.4
Aa31LG1G16930 Aethionema arabicum HOM05D005837 ORTHO05D007594 6.9e-130 468.0 309 78.0
MELO3C007756.2 Cucumis melo HOM05D005837 ORTHO05D007594 6.9e-130 468.0 307 77.9
FAN28G0473 Fragaria x ananassa HOM05D005837 ORTHO05D007594 9.9e-129 464.2 323 76.2
FAN23G0829 Fragaria x ananassa HOM05D005837 ORTHO05D007594 3.8e-128 462.2 366 68.3
HPP92_016352 Vanilla planifolia HOM05D005837 ORTHO05D007594 1.1e-127 460.7 311 74.9
FAN26G1738 Fragaria x ananassa HOM05D005837 ORTHO05D007594 5.4e-127 458.4 377 66.6
ECA232G4987 Erigeron canadensis HOM05D005837 ORTHO05D007594 7.1e-127 458.0 285 82.5
Nitab4.5_0006967g0030 Nicotiana tabacum HOM05D005837 ORTHO05D007594 1.1e-124 450.7 328 75.6
Manes.12G134900 Manihot esculenta HOM05D005837 ORTHO05D007594 2.8e-123 446.0 272 84.6
Sed0019406 Sechium edule HOM05D005837 ORTHO05D007594 6.2e-123 444.9 314 73.9
ClCG01G018760 Citrullus lanatus HOM05D005837 ORTHO05D007594 2.0e-121 439.9 303 75.6
Lsat_1_v5_gn_4_141261 Lactuca sativa HOM05D005837 ORTHO05D007594 2.0e-121 439.9 284 80.3
CsaV3_6G045430 Cucumis sativus L. HOM05D005837 ORTHO05D007594 7.6e-121 438.0 289 77.9
AUR62002009 Chenopodium quinoa HOM05D005837 ORTHO05D007594 5.4e-119 431.8 293 77.8
Haze_24932 Corylus avellana HOM05D005837 ORTHO05D007594 1.6e-118 430.3 408 59.8
Hund16285 Selenicereus undatus HOM05D005837 ORTHO05D007594 2.7e-118 429.5 304 75.0
AUR62003793 Chenopodium quinoa HOM05D005837 ORTHO05D007594 4.6e-118 428.7 314 72.6
Cc07_g15220 Coffea canephora HOM05D005837 ORTHO05D007594 4.6e-118 428.7 277 81.9
Lj4A891G48 Lonicera japonica HOM05D005837 ORTHO05D007594 6.7e-117 424.9 278 79.9
Actinidia28231 Actinidia chinensis HOM05D005837 ORTHO05D007594 2.5e-116 422.9 277 79.8
Zm00001eb244760 Zea mays HOM05D005837 ORTHO05D007594 3.3e-116 422.5 324 70.4
SHI29446 Sapria himalayana HOM05D005837 ORTHO05D007594 5.8e-113 411.8 313 67.1
FAN19G3104 Fragaria x ananassa HOM05D005837 ORTHO05D007594 4.8e-107 392.1 272 75.0
Dinv21909 Davidia involucrata HOM05D005837 ORTHO05D007594 1.7e-104 383.6 253 78.3
Dinv13188 Davidia involucrata HOM05D005837 ORTHO05D007594 4.9e-104 382.1 247 81.0
SEGI_29496 Sequoiadendron giganteum HOM05D005837 ORTHO05D007594 3.2e-103 379.4 285 71.6
Zm00001eb182830 Zea mays HOM05D005837 ORTHO05D007594 4.6e-102 375.6 312 65.1
Pp3c3_32740 Physcomitrium patens HOM05D005837 ORTHO05D007594 2.8e-99 366.3 304 64.5
Potri.007G092800 Populus trichocarpa HOM05D005837 ORTHO05D007594 3.1e-98 362.8 235 77.4
Psat7g054880 Pisum sativum HOM05D005837 ORTHO05D007594 1.4e-95 354.0 248 71.4
SMO169G0194 Selaginella moellendorffii HOM05D005837 ORTHO05D007594 2.5e-95 353.2 302 60.6
Mapoly0120s0005 Marchantia polymorpha HOM05D005837 ORTHO05D007594 3.1e-82 309.7 250 67.2
CBR_g39403 Chara braunii HOM05D005837 ORTHO05D007594 1.4e-77 294.3 298 54.7
Oeu002173.1 Olea europaea HOM05D005837 ORTHO05D007594 1.5e-68 264.2 325 48.0
CDE10G0517 Ceratophyllum demersum HOM05D005837 ORTHO05D007594 3.7e-59 233.0 256 52.3
RcHm_v2.0_Chr3g0453281 Rosa chinensis HOM05D005837 ORTHO05D007594 5.0e-56 222.6 193 62.7
AagrBONN_evm.TU.Sc2ySwM_117.3229 Anthoceros agrestis HOM05D005837 ORTHO05D007594 1.5e-55 221.1 231 51.9
vmacro18603 Vaccinium macrocarpon HOM05D005837 ORTHO05D007594 4.2e-55 219.5 139 79.9
RcHm_v2.0_Chr3g0467111 Rosa chinensis HOM05D005837 ORTHO05D007594 3.1e-50 203.4 157 71.3
MBI10_g33306_MAGBIO Magnolia biondii HOM05D000934 ORTHO05D000746 1.9e-39 167.5 114 71.1
MCO05G725 Micromonas commoda HOM05D005837 ORTHO05D007594 3.1e-37 160.2 301 38.2
Os02g0573300 Oryza sativa ssp. japonica HOM05D005837 ORTHO05D007594 3.7e-35 153.3 125 68.0
CAN.G151.30 Capsicum annuum HOM05D005837 ORTHO05D007594 1.9e-34 151.0 92 85.9
MBI10_g27985_MAGBIO Magnolia biondii HOM05D000934 ORTHO05D000746 4.3e-31 139.8 115 62.6
vmacro18602 Vaccinium macrocarpon HOM05D005837 ORTHO05D024186 4.0e-29 133.3 77 85.7
Cc07_g15210 Coffea canephora HOM05D005837 ORTHO05D024186 2.1e-17 94.4 54 83.3
Haze_26352 Corylus avellana HOM05D001098 ORTHO05D034890 1.1e-13 82.0 231 26.8
Haze_26763 Corylus avellana HOM05D001098 ORTHO05D034890 2.0e-12 77.8 300 23.0
CSS0035199 Camellia sinensis var. sinensis HOM05D001098 ORTHO05D002527 1.4e-10 71.6 307 27.4
MCO17G012 Micromonas commoda HOM05D001098 ORTHO05D034890 2.4e-10 70.9 268 27.2
COL.COLO4_30268 Corchorus olitorius HOM05D005837 ORTHO05D161296 3.2e-10 70.5 97 47.4
arahy.Tifrunner.gnm1.ann1.N1X7B2 Arachis hypogaea HOM05D001098 ORTHO05D002527 4.2e-10 70.1 287 27.5
Aqoxy2G01309 Aquilegia oxysepala HOM05D001098 ORTHO05D002527 9.3e-10 68.9 298 26.8
Aqoxy6G01547 Aquilegia oxysepala HOM05D001098 ORTHO05D002527 9.3e-10 68.9 298 26.8
arahy.Tifrunner.gnm1.ann1.7NF1VE Arachis hypogaea HOM05D001098 ORTHO05D002527 1.6e-09 68.2 287 27.2
Psat2g000520 Pisum sativum HOM05D001098 ORTHO05D002527 1.7e-08 64.7 311 26.7
HanXRQChr16g0515181 Helianthus annuus HOM05D001098 ORTHO05D002527 3.9e-08 63.5 282 27.7
BolC2t11972H Brassica oleracea HOM05D005837 ORTHO05D024186 5.1e-08 63.2 49 59.2
QL06p014336 Quercus lobata HOM05D001098 ORTHO05D002527 6.6e-08 62.8 326 25.5
TPR.G18630 Trifolium pratense HOM05D001098 ORTHO05D002527 6.6e-08 62.8 305 25.9
arahy.Tifrunner.gnm1.ann1.5U49GI Arachis hypogaea HOM05D001098 ORTHO05D002527 1.1e-07 62.0 261 26.8
Oeu007848.1 Olea europaea HOM05D001098 ORTHO05D002527 2.5e-07 60.8 284 23.9
HPP92_016760 Vanilla planifolia HOM05D000266 ORTHO05D000819 2.5e-07 60.8 238 29.0
Potri.016G113200 Populus trichocarpa HOM05D001098 ORTHO05D002527 2.1e-06 57.8 284 25.4
HPP92_021187 Vanilla planifolia HOM05D000266 ORTHO05D000819 2.1e-06 57.8 250 29.2
CiPaw.12G085200 Carya illinoinensis HOM05D001098 ORTHO05D002527 8.1e-06 55.8 285 23.5
Duzib093G2178 Durio zibethinus HOM05D000266 ORTHO05D000819 8.1e-06 55.8 229 26.2


User provided reference genes

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