Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.15559 Avicennia marina HOM05D004649 ORTHO05D005446 4.6e-239 830.9 429 100.0
Migut.K01446 Erythranthe guttata HOM05D004649 ORTHO05D005446 2.3e-206 722.2 429 87.2
Dinv33366 Davidia involucrata HOM05D004649 ORTHO05D005446 3.9e-198 694.9 429 81.4
CSS0030171 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 1.8e-195 686.0 429 80.0
CSS0047966 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 5.3e-195 684.5 429 80.0
SGA_v2.0_scaffold154G37160 Striga asiatica HOM05D004649 ORTHO05D005446 1.5e-194 682.9 429 81.1
GSVIVG01001824001 Vitis vinifera HOM05D004649 ORTHO05D005446 3.4e-194 681.8 425 79.8
Dinv25679 Davidia involucrata HOM05D004649 ORTHO05D005446 1.7e-193 679.5 435 78.9
Nitab4.5_0001031g0020 Nicotiana tabacum HOM05D004649 ORTHO05D005446 1.0e-190 670.2 426 77.9
Sopen02g038570 Solanum pennellii HOM05D004649 ORTHO05D005446 1.8e-190 669.5 429 78.3
Solyc02g093920.2 Solanum lycopersicum HOM05D004649 ORTHO05D005446 8.7e-190 667.2 429 78.1
QL02p072453 Quercus lobata HOM05D004649 ORTHO05D005446 1.1e-189 666.8 424 79.0
PGSC0003DMG400020222 Solanum tuberosum HOM05D004649 ORTHO05D005446 1.1e-189 666.8 429 77.4
Nitab4.5_0000559g0250 Nicotiana tabacum HOM05D004649 ORTHO05D005446 9.7e-189 663.7 429 77.6
Actinidia05924 Actinidia chinensis HOM05D004649 ORTHO05D005446 1.6e-188 662.9 430 77.4
CAN.G473.77 Capsicum annuum HOM05D004649 ORTHO05D005446 2.4e-187 659.1 429 76.5
TWI36G0899 Tripterygium wilfordii HOM05D004649 ORTHO05D005446 1.5e-186 656.4 425 77.4
TAR371G0838 Trochodendron aralioides HOM05D004649 ORTHO05D005446 1.3e-185 653.3 425 77.4
Thecc.04G029900 Theobroma cacao HOM05D004649 ORTHO05D005446 8.5e-185 650.6 422 75.8
CiPaw.04G034500 Carya illinoinensis HOM05D004649 ORTHO05D005446 1.9e-184 649.4 421 77.4
HanXRQChr14g0450901 Helianthus annuus HOM05D004649 ORTHO05D005446 5.5e-184 647.9 429 74.6
vmacro05936 Vaccinium macrocarpon HOM05D004649 ORTHO05D005446 5.5e-184 647.9 430 76.3
Gorai.012G088900 Gossypium raimondii HOM05D004649 ORTHO05D005446 3.6e-183 645.2 425 75.5
Atru.chr6.2512 Acer truncatum HOM05D004649 ORTHO05D005446 4.6e-183 644.8 425 76.5
Prupe.3G302400 Prunus persica HOM05D004649 ORTHO05D005446 1.0e-182 643.7 425 76.7
Gorai.006G040000 Gossypium raimondii HOM05D004649 ORTHO05D005446 1.8e-182 642.9 425 75.3
Nitab4.5_0006819g0030 Nicotiana tabacum HOM05D004649 ORTHO05D005446 2.3e-182 642.5 432 75.2
Rhsim10G0008900 Rhododendron simsii HOM05D004649 ORTHO05D005446 2.3e-182 642.5 430 75.3
Ciclev10015345m.g Citrus clementina HOM05D004649 ORTHO05D005446 5.1e-182 641.3 425 75.5
Gohir.D04G079000 Gossypium hirsutum HOM05D004649 ORTHO05D005446 6.7e-182 641.0 425 75.1
Gohir.A05G340700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 8.8e-182 640.6 425 74.8
Manes.17G106100 Manihot esculenta HOM05D004649 ORTHO05D005446 8.8e-182 640.6 425 76.2
Glyma.05G075400 Glycine max HOM05D004649 ORTHO05D005446 2.0e-181 639.4 425 76.5
Duzib264G0046 Durio zibethinus HOM05D004649 ORTHO05D005446 7.4e-181 637.5 425 74.6
Gohir.A09G034200 Gossypium hirsutum HOM05D004649 ORTHO05D005446 9.7e-181 637.1 425 74.6
Potri.001G334200 Populus trichocarpa HOM05D004649 ORTHO05D005446 6.3e-180 634.4 425 74.1
Glyma.19G075700 Glycine max HOM05D004649 ORTHO05D005446 1.8e-179 632.9 425 75.8
RcHm_v2.0_Chr2g0174731 Rosa chinensis HOM05D004649 ORTHO05D005446 4.1e-179 631.7 421 74.6
CANSAT64G0679 Cannabis sativa HOM05D004649 ORTHO05D005446 9.1e-179 630.6 425 74.4
Lsat_1_v5_gn_2_93941 Lactuca sativa HOM05D004649 ORTHO05D005446 1.5e-178 629.8 429 73.9
DCAR_011306 Daucus carota HOM05D004649 ORTHO05D005446 1.7e-177 626.3 430 72.8
FAN09G0187 Fragaria x ananassa HOM05D004649 ORTHO05D005446 2.2e-177 625.9 421 74.3
AUR62033709 Chenopodium quinoa HOM05D004649 ORTHO05D005446 2.9e-177 625.5 425 74.6
FAN02G2492 Fragaria x ananassa HOM05D004649 ORTHO05D005446 6.5e-177 624.4 421 74.1
AUR62036815 Chenopodium quinoa HOM05D004649 ORTHO05D005446 1.1e-176 623.6 425 74.6
FvH4_6g52990 Fragaria vesca HOM05D004649 ORTHO05D005446 1.9e-176 622.9 421 74.1
Phvul.004G055700 Phaseolus vulgaris HOM05D004649 ORTHO05D005446 1.9e-176 622.9 425 74.8
HanXRQChr07g0198311 Helianthus annuus HOM05D004649 ORTHO05D005446 5.5e-176 621.3 429 72.7
VMungo1080G0439 Vigna mungo HOM05D004649 ORTHO05D005446 1.2e-175 620.2 425 74.1
Gohir.D09G035100 Gossypium hirsutum HOM05D004649 ORTHO05D005446 2.1e-175 619.4 425 73.4
Cc07_g00570 Coffea canephora HOM05D004649 ORTHO05D005446 6.1e-175 617.8 435 73.8
CiPaw.03G052200 Carya illinoinensis HOM05D004649 ORTHO05D005446 1.4e-174 616.7 425 73.6
Duzib147G0539 Durio zibethinus HOM05D004649 ORTHO05D005446 1.8e-174 616.3 425 73.6
PGR142G2348 Punica granatum HOM05D004649 ORTHO05D005446 3.0e-174 615.5 428 72.4
arahy.Tifrunner.gnm1.ann1.2RTQ1W Arachis hypogaea HOM05D004649 ORTHO05D005446 3.9e-174 615.1 427 73.5
Ca_04417_v3 Cicer arietinum L. HOM05D004649 ORTHO05D005446 5.1e-174 614.8 426 73.9
ECA238G0199 Erigeron canadensis HOM05D004649 ORTHO05D005446 5.1e-174 614.8 427 71.9
Lalb_Chr02g0157841 Lupinus albus HOM05D004649 ORTHO05D005446 1.1e-173 613.6 427 74.0
COL.COLO4_08766 Corchorus olitorius HOM05D004649 ORTHO05D005446 2.6e-173 612.5 421 74.6
MD17G1015500 Malus domestica HOM05D004649 ORTHO05D005446 2.6e-173 612.5 425 72.5
MELO3C008213.2 Cucumis melo HOM05D004649 ORTHO05D005446 1.3e-172 610.1 425 72.7
CsaV3_6G001150 Cucumis sativus L. HOM05D004649 ORTHO05D005446 4.8e-172 608.2 425 72.2
arahy.Tifrunner.gnm1.ann1.B3K3FC Arachis hypogaea HOM05D004649 ORTHO05D005446 1.5e-170 603.2 434 71.9
Peaxi162Scf00420g00411 Petunia axillaris HOM05D004649 ORTHO05D005446 4.5e-170 601.7 438 71.9
TPR.G7524 Trifolium pratense HOM05D004649 ORTHO05D005446 4.5e-170 601.7 427 72.6
MD09G1015400 Malus domestica HOM05D004649 ORTHO05D005446 5.0e-169 598.2 425 71.5
CAN.G1965.13 Capsicum annuum HOM05D004649 ORTHO05D005446 1.4e-168 596.7 430 69.8
Lj7C608T4 Lonicera japonica HOM05D004649 ORTHO05D005446 1.4e-168 596.7 429 72.7
FAN05G5354 Fragaria x ananassa HOM05D004649 ORTHO05D005446 2.5e-168 595.9 463 67.2
Cpa.g.sc130.9 Carica papaya HOM05D004649 ORTHO05D005446 3.2e-168 595.5 426 71.6
Medtr6g023350 Medicago truncatula HOM05D004649 ORTHO05D005446 1.4e-166 590.1 427 70.7
Eucgr.I01664 Eucalyptus grandis HOM05D004649 ORTHO05D005446 1.8e-166 589.7 403 73.0
unitig_52.g17652 Utricularia gibba HOM05D004649 ORTHO05D005446 5.7e-165 584.7 440 71.6
Aqoxy5G03494 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 2.2e-164 582.8 429 69.0
Nitab4.5_0002887g0140 Nicotiana tabacum HOM05D004649 ORTHO05D005446 2.8e-164 582.4 429 70.2
Haze_14832 Corylus avellana HOM05D004649 ORTHO05D005446 3.7e-164 582.0 458 67.9
ClCG11G006900 Citrullus lanatus HOM05D004649 ORTHO05D005446 6.3e-164 581.3 459 66.4
Psat1g084880 Pisum sativum HOM05D004649 ORTHO05D005446 1.6e-162 576.6 427 70.0
Peaxi162Scf00700g00129 Petunia axillaris HOM05D004649 ORTHO05D005446 7.7e-162 574.3 422 72.0
THA.LOC104821114 Tarenaya hassleriana HOM05D004649 ORTHO05D005446 7.7e-162 574.3 423 69.3
Lj1g0022023 Lotus japonicus HOM05D004649 ORTHO05D005446 3.8e-161 572.0 427 68.4
Sed0002339 Sechium edule HOM05D004649 ORTHO05D005446 6.1e-159 564.7 425 67.8
Hund06757 Selenicereus undatus HOM05D004649 ORTHO05D005446 1.5e-157 560.1 425 68.9
HPP92_017768 Vanilla planifolia HOM05D004649 ORTHO05D005446 9.7e-157 557.4 422 65.6
CDE09G0552 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 1.7e-156 556.6 422 65.9
Gohir.D10G084700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.7e-156 556.6 425 67.1
Thhalv10013615m.g Eutrema salsugineum HOM05D004649 ORTHO05D005446 2.2e-156 556.2 430 66.3
Nn2g10549 Nelumbo nucifera HOM05D004649 ORTHO05D005446 3.7e-156 555.4 425 66.6
PSO782G5348 Papaver somniferum HOM05D004649 ORTHO05D005446 9.1e-155 550.8 426 66.4
Aa31LG11G15040 Aethionema arabicum HOM05D004649 ORTHO05D005446 2.2e-153 546.2 426 65.5
Sp6g29780 Schrenkiella parvula HOM05D004649 ORTHO05D005446 2.9e-153 545.8 426 64.8
Sc07g0004210 Simmondsia chinensis HOM05D004649 ORTHO05D005446 6.5e-153 544.7 383 73.1
BcaC03g13505 Brassica carinata HOM05D004649 ORTHO05D005446 3.6e-151 538.9 427 64.6
DCAR_015086 Daucus carota HOM05D004649 ORTHO05D005446 3.6e-151 538.9 421 64.4
BolC2t06607H Brassica oleracea HOM05D005656 ORTHO05D005446 4.7e-151 538.5 426 64.6
C02p06640 Brassica napus HOM05D004649 ORTHO05D005446 6.1e-151 538.1 427 64.6
BcaNung03172 Brassica carinata HOM05D004649 ORTHO05D005446 8.0e-151 537.7 425 64.0
Gorai.011G092400 Gossypium raimondii HOM05D004649 ORTHO05D005446 1.0e-150 537.3 425 66.8
BraA02t05210Z Brassica rapa HOM05D004649 ORTHO05D005446 4.0e-150 535.4 426 64.1
A02p02400 Brassica napus HOM05D005656 ORTHO05D007094 5.2e-150 535.0 425 64.0
Carub.0006s1245 Capsella rubella HOM05D004649 ORTHO05D005446 1.1e-147 527.3 426 63.8
Zm00001eb261210 Zea mays HOM05D004649 ORTHO05D005446 7.0e-147 524.6 425 64.5
A03p06510 Brassica napus HOM05D004649 ORTHO05D005446 6.6e-145 518.1 426 62.9
C09p62910 Brassica napus HOM05D005656 ORTHO05D007094 8.6e-145 517.7 425 63.1
BolC9t59128H Brassica oleracea HOM05D005656 ORTHO05D007094 8.6e-145 517.7 425 63.1
BcaB08g36970 Brassica carinata HOM05D004649 ORTHO05D005446 1.9e-144 516.5 426 62.9
Os08g0119000 Oryza sativa ssp. japonica HOM05D004649 ORTHO05D005446 1.9e-144 516.5 426 63.4
BcaC04g19049 Brassica carinata HOM05D005656 ORTHO05D007094 3.3e-144 515.8 425 62.8
Potri.017G066300 Populus trichocarpa HOM05D004649 ORTHO05D005446 4.2e-144 515.4 324 79.6
BraA03t09983Z Brassica rapa HOM05D004649 ORTHO05D005446 9.5e-144 514.2 426 62.2
BraA10t44487Z Brassica rapa HOM05D005656 ORTHO05D007094 1.6e-143 513.5 425 61.6
Manes.15G158000 Manihot esculenta HOM05D004649 ORTHO05D005446 2.1e-143 513.1 313 81.5
AT5G14250 Arabidopsis thaliana HOM05D004649 ORTHO05D005446 2.8e-143 512.7 426 62.9
BcaB01g06336 Brassica carinata HOM05D004649 ORTHO05D005446 5.2e-142 508.4 426 60.6
A10p24220 Brassica napus HOM05D005656 ORTHO05D007094 1.2e-141 507.3 425 61.4
AL6G24930 Arabidopsis lyrata HOM05D004649 ORTHO05D005446 4.4e-141 505.4 391 66.5
CARHR199090 Cardamine hirsuta HOM05D004649 ORTHO05D005446 2.2e-140 503.1 386 66.8
Sed0000018 Sechium edule HOM05D004649 ORTHO05D005446 5.4e-139 498.4 425 60.9
Aqoxy3G01472 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 5.9e-138 495.0 420 61.4
ATR0124G048 Amborella trichopoda HOM05D004649 ORTHO05D005446 3.9e-137 492.3 360 67.8
CDE02G4363 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 2.9e-132 476.1 443 58.5
SMO351G0195 Selaginella moellendorffii HOM05D004649 ORTHO05D005446 3.9e-129 465.7 423 56.7
Pp3c11_20060 Physcomitrium patens HOM05D004649 ORTHO05D005446 3.6e-127 459.1 427 54.8
Mapoly0005s0216 Marchantia polymorpha HOM05D004649 ORTHO05D005446 1.2e-125 454.1 427 53.9
AagrBONN_evm.TU.Sc2ySwM_368.1057 Anthoceros agrestis HOM05D004649 ORTHO05D005446 8.6e-121 438.0 451 51.2
EL10As11g23981 Beta vulgaris HOM05D004649 ORTHO05D005446 1.5e-120 437.2 386 63.0
PSO017G3153 Papaver somniferum HOM05D004649 ORTHO05D005446 9.2e-115 417.9 397 58.2
Hma1.2p1_0571F.1_g180750 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 1.5e-109 400.6 239 83.3
Sabra16G0215300 Salix brachista HOM05D004649 ORTHO05D005446 2.6e-109 399.8 241 82.6
CBR_g75710 Chara braunii HOM05D004649 ORTHO05D005446 3.4e-109 399.4 430 50.0
Actinidia36180 Actinidia chinensis HOM05D004649 ORTHO05D005446 3.5e-106 389.4 434 55.5
Nn3g16527 Nelumbo nucifera HOM05D004649 ORTHO05D005446 2.3e-105 386.7 284 66.9
Zm00001eb173540 Zea mays HOM05D004649 ORTHO05D005446 1.5e-101 374.0 336 60.7
BcaB01g05123 Brassica carinata HOM05D004649 ORTHO05D005446 1.1e-99 367.9 355 56.3
C03p07530 Brassica napus HOM05D004649 ORTHO05D005446 2.3e-97 360.1 365 55.1
Cre16.g671100 Chlamydomonas reinhardtii HOM05D004649 ORTHO05D005446 8.2e-71 271.9 429 38.0
Gohir.A01G185660 Gossypium hirsutum HOM05D004649 ORTHO05D005446 8.2e-71 271.9 214 67.8
C09p61600 Brassica napus HOM05D004649 ORTHO05D005446 2.5e-64 250.4 325 46.2
CAN.G473.64 Capsicum annuum HOM05D004649 ORTHO05D005446 2.6e-61 240.4 192 67.7
PRCOL_00002547 Prasinoderma coloniale HOM05D004649 ORTHO05D005446 1.4e-57 228.0 341 38.7
A03p07400 Brassica napus HOM05D004649 ORTHO05D005446 2.2e-55 220.7 194 60.8
BcaC04g18970 Brassica carinata HOM05D004649 ORTHO05D005446 2.6e-53 213.8 359 40.7
BraA03t10063Z Brassica rapa HOM05D004649 ORTHO05D005446 3.0e-49 200.3 194 55.7
BolC9t59028H Brassica oleracea HOM05D004649 ORTHO05D005446 3.7e-47 193.4 305 41.6
SEGI_26946 Sequoiadendron giganteum HOM05D004649 ORTHO05D005446 5.9e-45 186.0 145 63.4
Sabra07G0059200 Salix brachista HOM05D004649 ORTHO05D005446 1.4e-41 174.9 251 44.6
BolC3t13254H Brassica oleracea HOM05D004649 ORTHO05D005446 7.0e-30 136.0 105 68.6
MCO12G022 Micromonas commoda HOM05D004649 ORTHO05D005446 9.1e-30 135.6 310 30.6
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 5.0e-28 129.8 150 50.0
FAN09G3197 Fragaria x ananassa HOM05D004649 ORTHO05D005446 8.6e-28 129.0 119 56.3
Duzib268G1750 Durio zibethinus HOM05D004649 ORTHO05D005446 3.0e-25 120.6 124 50.8
BcaB08g36975 Brassica carinata HOM05D005656 ORTHO05D007094 3.7e-23 113.6 76 72.4
QL12p000006 Quercus lobata HOM05D004649 ORTHO05D005446 5.4e-22 109.8 78 67.9
QL12p000135 Quercus lobata HOM05D004649 ORTHO05D005446 5.4e-22 109.8 78 67.9
Hma1.2p1_0571F.1_g180740 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 8.3e-15 85.9 66 65.2
Oeu042415.1 Olea europaea HOM05D004649 ORTHO05D005446 4.1e-14 83.6 48 83.3
Aqoxy5G03476 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 4.6e-13 80.1 120 45.0
FvH4_2g01181 Fragaria vesca HOM05D000564 ORTHO05D005446 9.5e-11 72.4 109 45.0
ECA232G4246 Erigeron canadensis HOM05D004649 ORTHO05D005446 6.2e-10 69.7 75 48.0
Thhalv10007479m.g Eutrema salsugineum HOM05D002716 ORTHO05D003324 1.8e-09 68.2 213 27.7
Sp1g17970 Schrenkiella parvula HOM05D002716 ORTHO05D003324 3.1e-09 67.4 213 27.7
Carub.0001s1973 Capsella rubella HOM05D002716 ORTHO05D003324 4.0e-09 67.0 213 27.7
CARHR020700 Cardamine hirsuta HOM05D002716 ORTHO05D003324 4.0e-09 67.0 213 27.7
AT1G20200 Arabidopsis thaliana HOM05D002716 ORTHO05D003324 5.2e-09 66.6 213 27.7
BcaB03g12876 Brassica carinata HOM05D002716 ORTHO05D003324 5.2e-09 66.6 213 27.7
AL1G33040 Arabidopsis lyrata HOM05D002716 ORTHO05D003324 6.8e-09 66.2 213 27.7
FAN14G5770 Fragaria x ananassa HOM05D004649 ORTHO05D005446 1.2e-08 65.5 48 62.5
BcaC07g39026 Brassica carinata HOM05D002716 ORTHO05D003324 2.6e-08 64.3 213 26.8
C08p20020 Brassica napus HOM05D002716 ORTHO05D003324 2.6e-08 64.3 213 26.8
BolC8t49637H Brassica oleracea HOM05D002716 ORTHO05D003324 2.6e-08 64.3 213 26.8
FvH4_6g52500 Fragaria vesca HOM05D004649 ORTHO05D005446 3.4e-08 63.9 48 60.4
A07p41500 Brassica napus HOM05D002716 ORTHO05D003324 4.4e-08 63.5 213 27.2
BraA07t31682Z Brassica rapa HOM05D002716 ORTHO05D003324 4.4e-08 63.5 213 27.2
AL2G36010 Arabidopsis lyrata HOM05D002716 ORTHO05D003324 5.8e-08 63.2 213 26.8
BcaC08g47308 Brassica carinata HOM05D002716 ORTHO05D003324 5.8e-08 63.2 213 27.2
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 5.8e-08 63.2 49 65.3
C06p49910 Brassica napus HOM05D002716 ORTHO05D003324 5.8e-08 63.2 213 27.2
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 5.8e-08 63.2 49 65.3
BolC6t40029H Brassica oleracea HOM05D002716 ORTHO05D003324 5.8e-08 63.2 213 27.2
Carub.0002s2288 Capsella rubella HOM05D002716 ORTHO05D003324 5.8e-08 63.2 213 26.8
AT1G75990 Arabidopsis thaliana HOM05D002716 ORTHO05D003324 7.5e-08 62.8 213 26.8
Sp5g31110 Schrenkiella parvula HOM05D002716 ORTHO05D003324 7.5e-08 62.8 213 26.8
CARHR069530 Cardamine hirsuta HOM05D002716 ORTHO05D003324 1.3e-07 62.0 213 26.3
Ah.00g000740 Amaranthus hybridus HOM05D002716 ORTHO05D003324 2.4e-06 57.8 259 25.9
EL10As11g23980 Beta vulgaris HOM05D004649 ORTHO05D005446 2.4e-06 57.8 37 67.6


User provided reference genes

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