Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.15512 Avicennia marina HOM05D001104 ORTHO05D006624 3.6e-252 874.4 426 100.0
Oeu062922.1 Olea europaea HOM05D001104 ORTHO05D006624 2.3e-227 792.0 426 88.7
Cc07_g02180 Coffea canephora HOM05D001104 ORTHO05D006624 3.9e-222 774.6 426 85.4
Dinv35069 Davidia involucrata HOM05D001104 ORTHO05D006624 3.9e-222 774.6 426 84.7
CSS0039746 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 4.7e-220 767.7 426 84.5
Migut.H00115 Erythranthe guttata HOM05D001104 ORTHO05D006624 1.2e-218 763.1 411 88.6
Rhsim10G0021500 Rhododendron simsii HOM05D001104 ORTHO05D006624 1.5e-218 762.7 426 84.5
Dinv33487 Davidia involucrata HOM05D001104 ORTHO05D006624 7.5e-218 760.4 424 84.2
CAN.G973.9 Capsicum annuum HOM05D001104 ORTHO05D006624 1.3e-217 759.6 426 84.3
Actinidia06020 Actinidia chinensis HOM05D001104 ORTHO05D006624 1.7e-217 759.2 424 84.7
CSS0024274 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 2.9e-217 758.4 430 83.3
Nitab4.5_0001709g0040 Nicotiana tabacum HOM05D001104 ORTHO05D006624 1.4e-216 756.1 426 83.8
Hma1.2p1_0993F.1_g245480 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 3.2e-216 755.0 426 83.6
Solyc02g067740.4 Solanum lycopersicum HOM05D001104 ORTHO05D006624 1.7e-214 749.2 427 82.4
Sopen02g016860 Solanum pennellii HOM05D001104 ORTHO05D006624 1.1e-213 746.5 427 82.2
PGSC0003DMG400006955 Solanum tuberosum HOM05D001104 ORTHO05D006624 5.6e-213 744.2 427 82.4
Cpa.g.sc215.8 Carica papaya HOM05D001104 ORTHO05D006624 3.6e-212 741.5 417 81.8
Atru.chr6.2305 Acer truncatum HOM05D001104 ORTHO05D006624 3.1e-211 738.4 426 81.0
Prupe.3G285400 Prunus persica HOM05D001104 ORTHO05D006624 1.5e-210 736.1 426 81.0
CsaV3_5G027380 Cucumis sativus L. HOM05D001104 ORTHO05D006624 9.9e-210 733.4 428 80.1
TWI12G0063 Tripterygium wilfordii HOM05D001104 ORTHO05D006624 3.7e-209 731.5 426 81.0
MELO3C021546.2 Cucumis melo HOM05D001104 ORTHO05D006624 6.4e-209 730.7 428 80.1
Actinidia35743 Actinidia chinensis HOM05D001104 ORTHO05D006624 1.9e-208 729.2 426 80.5
Sed0005946 Sechium edule HOM05D001104 ORTHO05D006624 9.2e-208 726.9 426 78.6
Potri.001G348700 Populus trichocarpa HOM05D001104 ORTHO05D006624 7.8e-207 723.8 417 80.3
Haze_14675 Corylus avellana HOM05D001104 ORTHO05D006624 1.5e-205 719.5 415 81.7
MD17G1034200 Malus domestica HOM05D001104 ORTHO05D006624 2.5e-205 718.8 438 78.3
Lj7C592G4 Lonicera japonica HOM05D001104 ORTHO05D006624 1.6e-204 716.1 426 79.1
CiPaw.03G038600 Carya illinoinensis HOM05D001104 ORTHO05D006624 2.8e-204 715.3 426 79.6
Thecc.04G010000 Theobroma cacao HOM05D001104 ORTHO05D006624 1.1e-203 713.4 426 77.7
vmacro05831 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 1.1e-203 713.4 434 79.0
SalBow1G5303 Salvia bowleyana HOM05D001104 ORTHO05D006624 3.1e-203 711.8 413 81.8
Ciclev10015353m.g Citrus clementina HOM05D001104 ORTHO05D006624 5.2e-203 711.1 426 77.5
TAR374G1405 Trochodendron aralioides HOM05D001104 ORTHO05D006624 8.9e-203 710.3 426 78.4
Duzib147G0036 Durio zibethinus HOM05D001104 ORTHO05D006624 2.3e-198 695.7 425 75.5
RcHm_v2.0_Chr2g0171701 Rosa chinensis HOM05D001104 ORTHO05D006624 6.6e-198 694.1 432 76.4
Peaxi162Scf00933g00005 Petunia axillaris HOM05D001104 ORTHO05D006624 1.9e-197 692.6 392 83.4
Eucgr.I01793 Eucalyptus grandis HOM05D001104 ORTHO05D006624 9.6e-197 690.3 427 75.9
HanXRQChr14g0450311 Helianthus annuus HOM05D001104 ORTHO05D006624 1.6e-196 689.5 426 76.1
Gohir.A07G220700 Gossypium hirsutum HOM05D001104 ORTHO05D006624 3.1e-195 685.3 426 73.9
Gorai.001G262300 Gossypium raimondii HOM05D001104 ORTHO05D006624 4.0e-195 684.9 426 74.2
GSVIVG01032469001 Vitis vinifera HOM05D001104 ORTHO05D006624 4.0e-195 684.9 426 75.4
ECA238G2799 Erigeron canadensis HOM05D001104 ORTHO05D006624 9.0e-195 683.7 417 76.3
ECA232G2826 Erigeron canadensis HOM05D001104 ORTHO05D006624 1.2e-194 683.3 416 76.9
COL.COLO4_28978 Corchorus olitorius HOM05D001104 ORTHO05D006624 3.4e-194 681.8 449 73.5
FvH4_6g50760 Fragaria vesca HOM05D001104 ORTHO05D006624 1.7e-193 679.5 433 75.3
FAN14G0697 Fragaria x ananassa HOM05D001104 ORTHO05D006624 4.9e-193 677.9 433 75.1
Nn4g22776 Nelumbo nucifera HOM05D001104 ORTHO05D006624 6.4e-193 677.6 427 74.2
FAN05G2035 Fragaria x ananassa HOM05D001104 ORTHO05D006624 8.4e-193 677.2 433 75.3
Hma1.2p1_3249F.1_g334430 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 1.4e-192 676.4 394 81.2
ClCG09G018970 Citrullus lanatus HOM05D001104 ORTHO05D006624 9.3e-192 673.7 469 68.7
MD09G1032600 Malus domestica HOM05D001104 ORTHO05D006624 9.3e-192 673.7 439 74.7
HanXRQChr09g0266171 Helianthus annuus HOM05D001104 ORTHO05D006624 1.7e-190 669.5 426 73.9
PSO478G3469 Papaver somniferum HOM05D001104 ORTHO05D006624 3.9e-190 668.3 418 76.8
CANSAT64G0855 Cannabis sativa HOM05D001104 ORTHO05D006624 2.5e-189 665.6 417 74.1
Cfa007422 Carpinus fangiana HOM05D001104 ORTHO05D006624 1.3e-188 663.3 381 82.7
SGA_v2.0_scaffold135G34875 Striga asiatica HOM05D001104 ORTHO05D006624 1.3e-188 663.3 371 87.1
Aqoxy3G01030 Aquilegia oxysepala HOM05D001104 ORTHO05D006624 1.6e-188 662.9 418 74.9
QL02p076349 Quercus lobata HOM05D001104 ORTHO05D006624 8.1e-188 660.6 426 73.7
PGR142G0881 Punica granatum HOM05D001104 ORTHO05D006624 2.4e-184 649.0 424 72.9
Medtr6g007040 Medicago truncatula HOM05D001104 ORTHO05D006624 4.2e-184 648.3 424 70.5
arahy.Tifrunner.gnm1.ann1.PA6DSG Arachis hypogaea HOM05D001104 ORTHO05D006624 1.2e-183 646.7 426 70.0
BcaC06g30950 Brassica carinata HOM05D001104 ORTHO05D006624 6.0e-183 644.4 422 73.0
Sp2g16980 Schrenkiella parvula HOM05D001104 ORTHO05D006624 7.9e-183 644.0 419 73.3
THA.LOC104825337 Tarenaya hassleriana HOM05D001104 ORTHO05D006624 1.1e-181 640.2 420 72.1
BcaC06g33770 Brassica carinata HOM05D001104 ORTHO05D006624 1.9e-181 639.4 419 73.0
C07p37130 Brassica napus HOM05D001104 ORTHO05D006624 1.9e-181 639.4 419 73.0
DCAR_011201 Daucus carota HOM05D001104 ORTHO05D006624 1.9e-181 639.4 395 74.9
Thhalv10004293m.g Eutrema salsugineum HOM05D001104 ORTHO05D006624 4.8e-180 634.8 418 73.0
Gohir.D07G227400 Gossypium hirsutum HOM05D001104 ORTHO05D006624 4.0e-179 631.7 394 73.6
arahy.Tifrunner.gnm1.ann1.S5BZSG Arachis hypogaea HOM05D001104 ORTHO05D006624 5.3e-179 631.3 446 66.4
Phvul.004G013700 Phaseolus vulgaris HOM05D001104 ORTHO05D006624 5.3e-179 631.3 428 69.2
VMungo0464G0407 Vigna mungo HOM05D001104 ORTHO05D006624 1.7e-177 626.3 427 68.1
Glyma.19G007900 Glycine max HOM05D001104 ORTHO05D006624 2.2e-177 625.9 425 69.4
PSO017G6424 Papaver somniferum HOM05D001104 ORTHO05D006624 6.4e-177 624.4 418 72.5
Lsat_1_v5_gn_4_182480 Lactuca sativa HOM05D001104 ORTHO05D006624 4.2e-176 621.7 426 70.4
Lalb_Chr06g0176011 Lupinus albus HOM05D001104 ORTHO05D006624 9.3e-176 620.5 413 69.7
AT3G27930 Arabidopsis thaliana HOM05D001104 ORTHO05D006624 1.6e-175 619.8 418 70.8
DCAR_015045 Daucus carota HOM05D001104 ORTHO05D006624 1.6e-175 619.8 452 66.4
AL5G17430 Arabidopsis lyrata HOM05D001104 ORTHO05D006624 3.5e-175 618.6 418 69.9
Carub.0005s0650 Capsella rubella HOM05D001104 ORTHO05D006624 3.5e-175 618.6 418 70.6
Ca_04192_v3 Cicer arietinum L. HOM05D001104 ORTHO05D006624 1.8e-174 616.3 425 68.9
MBI16_g05636_MAGBIO Magnolia biondii HOM05D001104 ORTHO05D006624 8.2e-172 607.4 394 71.1
CARHR149500 Cardamine hirsuta HOM05D001104 ORTHO05D006624 1.5e-170 603.2 423 68.8
Lj2g0012499 Lotus japonicus HOM05D001104 ORTHO05D006624 1.5e-170 603.2 428 66.8
CSS0016338 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 2.0e-170 602.8 457 68.1
FAN02G3192 Fragaria x ananassa HOM05D001104 ORTHO05D006624 2.0e-170 602.8 488 62.9
ATR0730G148 Amborella trichopoda HOM05D001104 ORTHO05D006624 1.5e-165 586.6 424 65.8
EL10Ac4g08579 Beta vulgaris HOM05D001104 ORTHO05D006624 7.4e-165 584.3 426 65.5
Aa31LG2G4840 Aethionema arabicum HOM05D001104 ORTHO05D006285 9.0e-163 577.4 381 72.4
Oeu043054.1 Olea europaea HOM05D001104 ORTHO05D006285 4.5e-162 575.1 385 74.3
Sc03g0007930 Simmondsia chinensis HOM05D001104 ORTHO05D006624 6.5e-161 571.2 345 78.0
Nitab4.5_0001125g0070 Nicotiana tabacum HOM05D001104 ORTHO05D006624 1.4e-158 563.5 431 66.6
Os05g0577800 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 2.3e-158 562.8 426 61.5
Manes.17G117000 Manihot esculenta HOM05D001104 ORTHO05D006624 4.2e-152 542.0 417 64.3
CDE06G1183 Ceratophyllum demersum HOM05D001104 ORTHO05D006624 5.1e-150 535.0 426 61.0
vmacro18250 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 8.8e-150 534.3 426 64.1
CSS0012459 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 3.3e-149 532.3 436 63.5
HPP92_024321 Vanilla planifolia HOM05D001104 ORTHO05D006285 2.7e-143 512.7 356 65.4
BcaC03g17495 Brassica carinata HOM05D001104 ORTHO05D006624 1.5e-141 506.9 399 64.4
unitig_899.g15491 Utricularia gibba HOM05D000928 ORTHO05D001186 1.3e-137 493.8 401 61.3
Psat1g057160 Pisum sativum HOM05D001104 ORTHO05D006624 1.4e-126 457.2 302 69.9
Os05g0577900 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 2.3e-126 456.4 422 54.0
Rhsim08G0054100 Rhododendron simsii HOM05D001104 ORTHO05D006285 2.5e-120 436.4 424 55.9
AUR62029365 Chenopodium quinoa HOM05D001104 ORTHO05D006624 4.2e-120 435.6 423 53.7
A06p40770 Brassica napus HOM05D001104 ORTHO05D006624 1.8e-118 430.3 282 73.4
BolC7t44224H Brassica oleracea HOM05D001104 ORTHO05D006624 4.0e-118 429.1 281 73.0
BraA06t26998Z Brassica rapa HOM05D001104 ORTHO05D006624 5.2e-118 428.7 281 73.3
C02p54520 Brassica napus HOM05D001104 ORTHO05D006624 1.2e-117 427.6 426 54.7
C02p54570 Brassica napus HOM05D001104 ORTHO05D006624 5.0e-113 412.1 446 51.3
AagrBONN_evm.TU.Sc2ySwM_340.221 Anthoceros agrestis HOM05D001104 ORTHO05D006624 9.5e-112 407.9 427 49.4
AUR62043218 Chenopodium quinoa HOM05D001104 ORTHO05D006624 2.3e-110 403.3 426 50.9
BolC2t11515H Brassica oleracea HOM05D001104 ORTHO05D006624 3.4e-101 372.9 626 38.7
Pp3c25_9610 Physcomitrium patens HOM05D001104 ORTHO05D006624 1.0e-97 361.3 432 44.7
Zm00001eb344500 Zea mays HOM05D001104 ORTHO05D006624 1.5e-96 357.5 269 63.6
HanXRQChr06g0175561 Helianthus annuus HOM05D001104 ORTHO05D006624 8.9e-94 348.2 285 61.8
A02p35680 Brassica napus HOM05D001104 ORTHO05D006624 7.6e-85 318.5 689 32.7
Hund10304 Selenicereus undatus HOM05D001104 ORTHO05D006624 1.3e-84 317.8 265 60.8
TPR.G2265 Trifolium pratense HOM05D001104 ORTHO05D006624 1.9e-83 313.9 200 71.5
BraA02t08571Z Brassica rapa HOM05D001104 ORTHO05D006624 1.6e-63 247.7 532 33.6
BolC2t11520H Brassica oleracea HOM05D001104 ORTHO05D006624 1.5e-61 241.1 316 45.6
Psat0s3401g0080 Pisum sativum HOM05D001104 ORTHO05D006624 3.7e-55 219.9 145 70.3
Cfa008567 Carpinus fangiana HOM05D001104 ORTHO05D006624 3.5e-50 203.4 154 66.2
A06p40780 Brassica napus HOM05D001104 ORTHO05D006624 3.7e-47 193.4 122 73.0
BraA02t08570Z Brassica rapa HOM05D001104 ORTHO05D006624 2.1e-42 177.6 116 69.0
Oeu043225.1 Olea europaea HOM05D003428 ORTHO05D006624 1.1e-40 171.8 288 37.5
Oeu051906.1 Olea europaea HOM05D003428 ORTHO05D006624 3.3e-40 170.2 288 37.5
SEGI_13753 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 1.1e-38 165.2 149 52.3
Psat1g219520 Pisum sativum HOM05D001104 ORTHO05D006624 3.9e-33 146.7 90 75.6
Glyma.05G007402 Glycine max HOM05D001104 ORTHO05D006624 4.4e-32 143.3 88 76.1
Actinidia36089 Actinidia chinensis HOM05D001104 ORTHO05D006624 2.6e-24 117.5 69 81.2
Thecc.04G111800 Theobroma cacao HOM05D001104 ORTHO05D006624 1.7e-23 114.8 85 60.0
Cfa008566 Carpinus fangiana HOM05D001104 ORTHO05D006624 1.6e-21 108.2 58 84.5
BcaB07g30139 Brassica carinata HOM05D001104 ORTHO05D006624 2.7e-18 97.4 64 71.9
HanXRQChr16g0517041 Helianthus annuus HOM05D001104 ORTHO05D006624 3.7e-15 87.0 79 49.4
Cre08.g358552 Chlamydomonas reinhardtii HOM05D001104 ORTHO05D006624 1.1e-14 85.5 461 23.9
SEGI_37884 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 4.5e-13 80.1 56 57.1
Sopen07g006450 Solanum pennellii HOM05D001104 ORTHO05D006624 6.1e-10 69.7 43 72.1
SEGI_12261 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 4.4e-08 63.5 105 37.1
TPR.G18830 Trifolium pratense HOM05D001104 ORTHO05D006624 4.9e-07 60.1 44 59.1
Medtr6g007060 Medicago truncatula HOM05D001104 ORTHO05D006624 2.4e-06 57.8 42 54.8


User provided reference genes

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