Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.14637 Avicennia marina HOM05D004784 ORTHO05D005762 3.0e-240 834.7 409 100.0
MSTRG.7197 Avicennia marina HOM05D004784 ORTHO05D005762 5.9e-220 767.3 409 89.7
SalBow8G0639 Salvia bowleyana HOM05D004784 ORTHO05D005762 6.5e-219 763.8 409 88.5
Oeu002744.1 Olea europaea HOM05D004784 ORTHO05D005762 3.2e-218 761.5 409 88.3
Oeu013835.1 Olea europaea HOM05D004784 ORTHO05D005762 5.2e-216 754.2 409 87.0
Lj1A1232G87 Lonicera japonica HOM05D004784 ORTHO05D005762 2.8e-214 748.4 407 88.2
Cc09_g01490 Coffea canephora HOM05D004784 ORTHO05D005762 3.7e-214 748.0 409 87.3
Migut.M01336 Erythranthe guttata HOM05D004784 ORTHO05D005762 3.7e-214 748.0 407 87.0
Nitab4.5_0002695g0040 Nicotiana tabacum HOM05D004784 ORTHO05D005762 4.8e-214 747.7 407 87.2
Hma1.2p1_0298F.1_g117720 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 6.3e-214 747.3 408 87.5
Nitab4.5_0007963g0010 Nicotiana tabacum HOM05D004784 ORTHO05D005762 1.4e-213 746.1 407 87.2
Dinv13913 Davidia involucrata HOM05D004784 ORTHO05D005762 5.4e-213 744.2 409 86.8
unitig_92.g28113 Utricularia gibba HOM05D004784 ORTHO05D005762 5.4e-213 744.2 409 87.0
CiPaw.09G093700 Carya illinoinensis HOM05D004784 ORTHO05D005762 2.0e-212 742.3 409 86.1
Dinv20065 Davidia involucrata HOM05D004784 ORTHO05D005762 2.0e-212 742.3 409 86.6
Hma1.2p1_0091F.1_g046500 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 1.0e-211 740.0 409 84.8
Peaxi162Scf00131g01117 Petunia axillaris HOM05D004784 ORTHO05D005762 1.0e-211 740.0 408 86.0
Prupe.4G018500 Prunus persica HOM05D004784 ORTHO05D005762 1.0e-211 740.0 409 86.1
Manes.17G025900 Manihot esculenta HOM05D004784 ORTHO05D005762 1.3e-211 739.6 409 86.6
SGA_v2.0_scaffold7G03812 Striga asiatica HOM05D004784 ORTHO05D005762 1.3e-211 739.6 436 83.3
TWI38G1114 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 1.3e-211 739.6 409 86.6
Sopen02g025500 Solanum pennellii HOM05D004784 ORTHO05D005762 1.7e-211 739.2 407 86.0
PGSC0003DMG400016444 Solanum tuberosum HOM05D004784 ORTHO05D005762 1.7e-211 739.2 407 86.0
Solyc02g080810.3 Solanum lycopersicum HOM05D004784 ORTHO05D005762 2.9e-211 738.4 407 85.7
Rhsim13G0152700 Rhododendron simsii HOM05D004784 ORTHO05D005762 6.6e-211 737.3 409 86.6
CiPaw.10G073000 Carya illinoinensis HOM05D004784 ORTHO05D005762 1.1e-210 736.5 409 86.1
TWI63G0560 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 1.1e-210 736.5 409 86.1
QL05p072692 Quercus lobata HOM05D004784 ORTHO05D005762 1.5e-210 736.1 408 85.5
Gohir.A05G171500 Gossypium hirsutum HOM05D004784 ORTHO05D005762 2.5e-210 735.3 409 86.1
Gohir.D05G174600 Gossypium hirsutum HOM05D004784 ORTHO05D005762 3.3e-210 734.9 409 86.3
Ciclev10015433m.g Citrus clementina HOM05D004784 ORTHO05D005762 4.2e-210 734.6 410 84.9
Glyma.17G012000 Glycine max HOM05D004784 ORTHO05D005762 4.2e-210 734.6 409 85.8
Thecc.06G223500 Theobroma cacao HOM05D004784 ORTHO05D005762 5.5e-210 734.2 409 85.6
CAN.G1014.12 Capsicum annuum HOM05D004784 ORTHO05D005762 7.2e-210 733.8 407 85.7
Glyma.07G262100 Glycine max HOM05D004784 ORTHO05D005762 7.2e-210 733.8 409 85.1
QL02p099920 Quercus lobata HOM05D004784 ORTHO05D005762 7.2e-210 733.8 408 84.8
arahy.Tifrunner.gnm1.ann1.EH8QHL Arachis hypogaea HOM05D004784 ORTHO05D005762 9.5e-210 733.4 409 85.3
Glyma.09G004700 Glycine max HOM05D004784 ORTHO05D005762 1.2e-209 733.0 409 85.6
Hund21422 Selenicereus undatus HOM05D004784 ORTHO05D005762 1.2e-209 733.0 409 84.4
DCAR_008168 Daucus carota HOM05D004784 ORTHO05D005762 2.8e-209 731.9 421 84.1
Duzib192G0808 Durio zibethinus HOM05D004784 ORTHO05D005762 2.8e-209 731.9 409 85.1
Phvul.003G080400 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 2.8e-209 731.9 409 85.1
Glyma.15G109300 Glycine max HOM05D004784 ORTHO05D005762 4.7e-209 731.1 403 86.1
Lalb_Chr18g0056491 Lupinus albus HOM05D004784 ORTHO05D005762 4.7e-209 731.1 407 85.7
Eucgr.L02773 Eucalyptus grandis HOM05D004784 ORTHO05D005762 6.1e-209 730.7 409 85.1
FvH4_3g01820 Fragaria vesca HOM05D004784 ORTHO05D005762 6.1e-209 730.7 409 85.1
MELO3C002444.2 Cucumis melo HOM05D004784 ORTHO05D005762 8.0e-209 730.3 409 84.8
MD10G1323700 Malus domestica HOM05D004784 ORTHO05D005762 8.0e-209 730.3 409 84.8
VMungo1215G1817 Vigna mungo HOM05D004784 ORTHO05D005762 8.0e-209 730.3 409 85.6
COL.COLO4_31797 Corchorus olitorius HOM05D004784 ORTHO05D005762 1.0e-208 729.9 409 85.1
FAN25G0478 Fragaria x ananassa HOM05D004784 ORTHO05D005762 1.0e-208 729.9 409 85.1
Sed0006727 Sechium edule HOM05D004784 ORTHO05D005762 1.4e-208 729.6 409 84.4
TAR629G2745 Trochodendron aralioides HOM05D004784 ORTHO05D005762 1.8e-208 729.2 409 84.4
Ca_21072_v3 Cicer arietinum L. HOM05D004784 ORTHO05D005762 2.3e-208 728.8 409 84.8
ClCG03G004610 Citrullus lanatus HOM05D004784 ORTHO05D005762 2.3e-208 728.8 409 84.8
RcHm_v2.0_Chr5g0002651 Rosa chinensis HOM05D004784 ORTHO05D005762 2.3e-208 728.8 409 84.8
Gohir.A06G149200 Gossypium hirsutum HOM05D004784 ORTHO05D005762 3.0e-208 728.4 409 85.1
Hund23455 Selenicereus undatus HOM05D004784 ORTHO05D005762 3.0e-208 728.4 409 84.8
AT1G11860 Arabidopsis thaliana HOM05D004784 ORTHO05D005762 4.0e-208 728.0 409 84.1
Gorai.010G181500 Gossypium raimondii HOM05D004784 ORTHO05D005762 8.9e-208 726.9 409 84.8
Cfa000202 Carpinus fangiana HOM05D004784 ORTHO05D005762 1.2e-207 726.5 409 84.4
CsaV3_1G010620 Cucumis sativus L. HOM05D004784 ORTHO05D005762 1.5e-207 726.1 409 84.4
THA.LOC104809494 Tarenaya hassleriana HOM05D004784 ORTHO05D005762 1.5e-207 726.1 409 83.6
Haze_06821 Corylus avellana HOM05D004784 ORTHO05D005762 2.0e-207 725.7 409 84.1
Medtr4g132360 Medicago truncatula HOM05D004784 ORTHO05D005762 2.0e-207 725.7 409 84.4
Phvul.006G148700 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 2.0e-207 725.7 409 84.6
C08p47920 Brassica napus HOM05D004784 ORTHO05D005762 2.6e-207 725.3 409 83.6
vmacro03682 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 2.6e-207 725.3 425 82.6
A09p64310 Brassica napus HOM05D004784 ORTHO05D005762 3.4e-207 724.9 409 83.4
BraA09t41774Z Brassica rapa HOM05D004784 ORTHO05D005762 3.4e-207 724.9 409 83.4
Gohir.D06G155300 Gossypium hirsutum HOM05D004784 ORTHO05D005762 3.4e-207 724.9 409 84.6
AL1G23030 Arabidopsis lyrata HOM05D004784 ORTHO05D005762 4.4e-207 724.5 409 83.6
Potri.004G009600 Populus trichocarpa HOM05D004784 ORTHO05D005762 4.4e-207 724.5 409 83.9
TPR.G37066 Trifolium pratense HOM05D004784 ORTHO05D005762 5.7e-207 724.2 409 83.9
CANSAT56G2555 Cannabis sativa HOM05D004784 ORTHO05D005762 7.5e-207 723.8 409 85.1
CARHR012170 Cardamine hirsuta HOM05D004784 ORTHO05D005762 7.5e-207 723.8 409 83.4
FAN21G1227 Fragaria x ananassa HOM05D004784 ORTHO05D005762 7.5e-207 723.8 409 84.4
Atru.chr10.2254 Acer truncatum HOM05D004784 ORTHO05D005762 9.8e-207 723.4 409 82.6
BolC8t52329H Brassica oleracea HOM05D004784 ORTHO05D005762 9.8e-207 723.4 409 83.1
Carub.0001s1151 Capsella rubella HOM05D004784 ORTHO05D005762 1.7e-206 722.6 409 83.4
Thhalv10007781m.g Eutrema salsugineum HOM05D004784 ORTHO05D005762 2.2e-206 722.2 409 83.4
Aqoxy1G03119 Aquilegia oxysepala HOM05D004784 ORTHO05D005762 2.8e-206 721.8 409 82.9
Lalb_Chr15g0087671 Lupinus albus HOM05D004784 ORTHO05D005762 2.8e-206 721.8 407 85.0
Sed0013135 Sechium edule HOM05D004784 ORTHO05D005762 2.8e-206 721.8 409 83.1
Potri.011G006800 Populus trichocarpa HOM05D004784 ORTHO05D005762 3.7e-206 721.5 409 83.1
PGR142G1596 Punica granatum HOM05D004784 ORTHO05D005762 3.7e-206 721.5 411 84.2
Ah.09g234740 Amaranthus hybridus HOM05D004784 ORTHO05D005762 4.9e-206 721.1 409 83.9
Sabra11G0005900 Salix brachista HOM05D004784 ORTHO05D005762 6.3e-206 720.7 409 83.4
Aa31LG1G2870 Aethionema arabicum HOM05D004784 ORTHO05D005762 8.3e-206 720.3 409 83.4
Lj6g0010262 Lotus japonicus HOM05D004784 ORTHO05D005762 8.3e-206 720.3 409 84.1
Sp1g10470 Schrenkiella parvula HOM05D004784 ORTHO05D005762 1.4e-205 719.5 409 82.9
Nn1g03473 Nelumbo nucifera HOM05D004784 ORTHO05D005762 3.1e-205 718.4 451 78.3
Ah.14g087950 Amaranthus hybridus HOM05D004784 ORTHO05D005762 4.1e-205 718.0 409 83.6
PSO541G3045 Papaver somniferum HOM05D004784 ORTHO05D005762 4.1e-205 718.0 410 82.4
PSO675G1799 Papaver somniferum HOM05D004784 ORTHO05D005762 5.4e-205 717.6 410 82.4
RhsimUnG0232700 Rhododendron simsii HOM05D004784 ORTHO05D005762 1.2e-204 716.5 452 78.3
Psat4g005920 Pisum sativum HOM05D004784 ORTHO05D005762 1.6e-204 716.1 410 83.7
C08p14960 Brassica napus HOM05D004784 ORTHO05D005762 7.8e-204 713.8 410 82.7
BolC8t49127H Brassica oleracea HOM05D004784 ORTHO05D005762 7.8e-204 713.8 410 82.7
BraA08t35239Z Brassica rapa HOM05D004784 ORTHO05D005762 7.8e-204 713.8 410 82.9
MBI02_g15378_MAGBIO Magnolia biondii HOM05D004784 ORTHO05D005762 3.8e-203 711.4 410 82.9
arahy.Tifrunner.gnm1.ann1.PLZ2LX Arachis hypogaea HOM05D004784 ORTHO05D005762 1.1e-202 709.9 398 84.9
AUR62012328 Chenopodium quinoa HOM05D004784 ORTHO05D005762 3.3e-202 708.4 409 81.9
AUR62022970 Chenopodium quinoa HOM05D004784 ORTHO05D005762 4.3e-202 708.0 409 82.2
vmacro22539 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 1.6e-201 706.1 476 73.9
Sc24g0000220 Simmondsia chinensis HOM05D004784 ORTHO05D005762 2.1e-201 705.7 408 81.6
Oeu040336.3 Olea europaea HOM05D004784 ORTHO05D005762 2.8e-201 705.3 520 69.0
Sc05g0009310 Simmondsia chinensis HOM05D004784 ORTHO05D005762 1.0e-200 703.4 408 81.9
Lsat_1_v5_gn_7_16480 Lactuca sativa HOM05D004784 ORTHO05D005762 5.8e-199 697.6 389 86.4
CDE05G1701 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 2.2e-198 695.7 409 80.4
CDE02G4424 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 8.3e-198 693.7 409 80.7
Gorai.009G179900 Gossypium raimondii HOM05D004784 ORTHO05D005762 1.9e-197 692.6 386 86.0
Nn030s41595 Nelumbo nucifera HOM05D004784 ORTHO05D005762 1.9e-197 692.6 380 86.8
EL10Ac6g15683 Beta vulgaris HOM05D004784 ORTHO05D005762 6.0e-196 687.6 452 73.5
Sabra04G0005000 Salix brachista HOM05D004784 ORTHO05D005762 1.9e-194 682.6 385 83.9
ATR0794G107 Amborella trichopoda HOM05D004784 ORTHO05D005762 4.7e-193 677.9 418 79.9
A08p33210 Brassica napus HOM05D004784 ORTHO05D005762 3.1e-192 675.2 410 79.5
HanXRQChr15g0470421 Helianthus annuus HOM05D004784 ORTHO05D005762 3.4e-191 671.8 356 89.3
GSVIVG01012702001 Vitis vinifera HOM05D004784 ORTHO05D005762 1.3e-190 669.8 358 88.3
HPP92_004130 Vanilla planifolia HOM05D004784 ORTHO05D005762 2.2e-190 669.1 413 78.0
Os04g0623800 Oryza sativa ssp. japonica HOM05D004784 ORTHO05D005762 6.0e-188 661.0 401 79.1
Zm00001eb070250 Zea mays HOM05D004784 ORTHO05D005762 2.5e-186 655.6 387 80.6
SEGI_27497 Sequoiadendron giganteum HOM05D004784 ORTHO05D005762 2.8e-185 652.1 407 75.7
BcaB03g13227 Brassica carinata HOM05D004784 ORTHO05D005762 1.1e-184 650.2 358 85.8
ECA236G1893 Erigeron canadensis HOM05D004784 ORTHO05D005762 1.4e-181 639.8 409 77.0
Pp3c4_15010 Physcomitrium patens HOM05D004784 ORTHO05D005762 6.2e-177 624.4 413 72.4
Pp3c12_9500 Physcomitrium patens HOM05D004784 ORTHO05D005762 7.6e-175 617.5 411 71.8
AagrBONN_evm.TU.Sc2ySwM_344.1952 Anthoceros agrestis HOM05D004784 ORTHO05D005762 1.6e-172 609.8 410 73.2
Mapoly0129s0024 Marchantia polymorpha HOM05D004784 ORTHO05D005762 6.6e-171 604.4 416 69.2
TAR627G1106 Trochodendron aralioides HOM05D004784 ORTHO05D005762 5.1e-163 578.2 320 84.4
SMO352G0047 Selaginella moellendorffii HOM05D004784 ORTHO05D005762 2.0e-159 566.2 407 66.6
CSS0014504 Camellia sinensis var. sinensis HOM05D004784 ORTHO05D005762 3.9e-155 552.0 390 70.8
A06p08340 Brassica napus HOM05D004784 ORTHO05D005762 4.0e-152 542.0 409 67.0
TAR626G0807 Trochodendron aralioides HOM05D004784 ORTHO05D005762 5.3e-144 515.0 287 85.0
Actinidia26902 Actinidia chinensis HOM05D004784 ORTHO05D005762 7.6e-143 511.1 310 81.6
Cre03.g193750 Chlamydomonas reinhardtii HOM05D004784 ORTHO05D005762 3.8e-142 508.8 400 61.8
Eucgr.E03909 Eucalyptus grandis HOM05D004784 ORTHO05D005762 3.7e-129 465.7 245 91.4
PRCOL_00007041 Prasinoderma coloniale HOM05D004784 ORTHO05D005762 7.2e-125 451.4 368 61.7
Atru.chr8.533 Acer truncatum HOM05D004784 ORTHO05D005762 3.9e-123 445.7 258 80.2
MCO15G045 Micromonas commoda HOM05D004784 ORTHO05D005762 5.0e-118 428.7 385 54.8
MD05G1348800 Malus domestica HOM05D004784 ORTHO05D005762 2.8e-113 412.9 238 81.5
Lalb_Chr20g0118761 Lupinus albus HOM05D004784 ORTHO05D005762 2.2e-110 403.3 228 84.2
BraA06t24032Z Brassica rapa HOM05D000911 ORTHO05D001266 9.1e-104 381.3 239 75.3
Cpa.g.sc152.29 Carica papaya HOM05D004784 ORTHO05D005762 5.4e-96 355.5 197 85.8
Cfa026602 Carpinus fangiana HOM05D004784 ORTHO05D005762 1.1e-80 304.7 393 43.8
Haze_26660 Corylus avellana HOM05D004784 ORTHO05D005762 8.0e-76 288.5 390 42.6
CBR_g24348 Chara braunii HOM05D004784 ORTHO05D005762 2.2e-73 280.4 183 77.6
Sopen07g011340 Solanum pennellii HOM05D004784 ORTHO05D005762 6.8e-67 258.8 180 69.4
EL10Ac1g01135 Beta vulgaris HOM05D004784 ORTHO05D005762 1.9e-56 224.2 141 75.2
EL10Ac2g03767 Beta vulgaris HOM05D004784 ORTHO05D005762 3.2e-56 223.4 140 75.7
Atru.chr8.531 Acer truncatum HOM05D004784 ORTHO05D005762 1.7e-54 217.6 124 79.8
Actinidia05506 Actinidia chinensis HOM05D004784 ORTHO05D005762 7.1e-48 195.7 104 91.3
Actinidia11861 Actinidia chinensis HOM05D004784 ORTHO05D005762 8.2e-20 102.4 58 77.6
Actinidia15969 Actinidia chinensis HOM05D004784 ORTHO05D058202 5.9e-18 96.3 128 43.8
Lsat_1_v5_gn_9_118621 Lactuca sativa HOM05D006894 ORTHO05D008724 1.4e-11 75.1 330 24.2
PGR042G0448 Punica granatum HOM05D006894 ORTHO05D008724 9.1e-11 72.4 327 22.9


User provided reference genes

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