Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.14535 Avicennia marina HOM05D004382 ORTHO05D005181 4.8e-73 277.7 139 100.0
MSTRG.7052 Avicennia marina HOM05D004382 ORTHO05D005181 1.2e-60 236.5 140 85.0
SalBow8G0430 Salvia bowleyana HOM05D004382 ORTHO05D005181 1.3e-57 226.5 135 84.4
Ciclev10022793m.g Citrus clementina HOM05D004382 ORTHO05D005181 2.4e-56 222.2 139 82.0
Cc05_g15930 Coffea canephora HOM05D004382 ORTHO05D005181 1.2e-55 219.9 140 82.1
CSS0001445 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 2.7e-55 218.8 139 79.1
Thecc.07G156900 Theobroma cacao HOM05D004382 ORTHO05D005181 1.0e-54 216.9 140 79.3
Oeu002809.1 Olea europaea HOM05D004382 ORTHO05D005181 2.3e-54 215.7 140 79.3
Migut.H01700 Erythranthe guttata HOM05D004382 ORTHO05D005181 2.9e-54 215.3 140 78.6
SGA_v2.0_scaffold49G18168 Striga asiatica HOM05D004382 ORTHO05D005181 1.1e-53 213.4 140 80.7
Hma1.2p1_0321F.1_g124500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 1.9e-53 212.6 141 79.4
Gohir.D05G330700 Gossypium hirsutum HOM05D004382 ORTHO05D005181 2.5e-53 212.2 141 78.7
Gorai.009G354500 Gossypium raimondii HOM05D004382 ORTHO05D005181 2.5e-53 212.2 141 78.7
QL04p074767 Quercus lobata HOM05D004382 ORTHO05D005181 4.3e-53 211.5 139 78.4
CSS0016237 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 5.6e-53 211.1 137 78.1
Sed0025739 Sechium edule HOM05D004382 ORTHO05D005181 5.6e-53 211.1 141 80.1
Gohir.A04G050200 Gossypium hirsutum HOM05D004382 ORTHO05D005181 7.2e-53 210.7 141 78.7
CAN.G943.25 Capsicum annuum HOM05D004382 ORTHO05D005181 9.5e-53 210.3 140 80.7
Atru.chr2.1854 Acer truncatum HOM05D004382 ORTHO05D005181 1.2e-52 209.9 139 78.4
Phvul.005G055200 Phaseolus vulgaris HOM05D004382 ORTHO05D005181 1.6e-52 209.5 141 78.0
Hma1.2p1_0193F.1_g084500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 2.1e-52 209.1 140 78.6
Glyma.08G173700 Glycine max HOM05D004382 ORTHO05D005181 2.8e-52 208.8 141 78.7
MD05G1215200 Malus domestica HOM05D004382 ORTHO05D005181 2.8e-52 208.8 141 75.9
Sed0014118 Sechium edule HOM05D004382 ORTHO05D005181 2.8e-52 208.8 141 79.4
TWI38G0625 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 2.8e-52 208.8 142 78.9
Glyma.15G253700 Glycine max HOM05D004382 ORTHO05D005181 3.6e-52 208.4 140 77.9
PGR142G2616 Punica granatum HOM05D004382 ORTHO05D005181 4.7e-52 208.0 135 77.0
TWI38G0568 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 6.1e-52 207.6 142 78.9
arahy.Tifrunner.gnm1.ann1.9QX17Y Arachis hypogaea HOM05D004382 ORTHO05D005181 8.0e-52 207.2 141 75.9
Peaxi162Scf00006g00149 Petunia axillaris HOM05D004382 ORTHO05D005181 8.0e-52 207.2 142 78.9
Potri.011G142300 Populus trichocarpa HOM05D004382 ORTHO05D005181 8.0e-52 207.2 141 78.7
Lj3g0019499 Lotus japonicus HOM05D004382 ORTHO05D005181 1.4e-51 206.5 141 75.2
VMungo1080G1647 Vigna mungo HOM05D004382 ORTHO05D005181 1.4e-51 206.5 141 77.3
Duzib187G1376 Durio zibethinus HOM05D004382 ORTHO05D005181 1.8e-51 206.1 140 77.9
Nitab4.5_0002475g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 1.8e-51 206.1 141 76.6
Oeu003841.1 Olea europaea HOM05D004382 ORTHO05D005181 1.8e-51 206.1 142 77.5
arahy.Tifrunner.gnm1.ann1.HCTL36 Arachis hypogaea HOM05D004382 ORTHO05D005181 2.3e-51 205.7 141 75.9
SalBow5G1313 Salvia bowleyana HOM05D004382 ORTHO05D005181 2.3e-51 205.7 141 76.6
SalBow5G2519 Salvia bowleyana HOM05D004382 ORTHO05D005181 2.3e-51 205.7 141 76.6
Nitab4.5_0000134g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 4.0e-51 204.9 142 75.4
CANSAT56G1367 Cannabis sativa HOM05D004382 ORTHO05D005181 2.0e-50 202.6 141 75.2
ClCG07G010700 Citrullus lanatus HOM05D004382 ORTHO05D005181 2.0e-50 202.6 141 77.3
Actinidia37109 Actinidia chinensis HOM05D004382 ORTHO05D005181 3.4e-50 201.8 143 76.9
COL.COLO4_05073 Corchorus olitorius HOM05D004382 ORTHO05D005181 3.4e-50 201.8 142 76.1
Prupe.4G143700 Prunus persica HOM05D004382 ORTHO05D005181 4.4e-50 201.4 141 74.5
GSVIVG01020484001 Vitis vinifera HOM05D004382 ORTHO05D005181 4.4e-50 201.4 141 77.3
CiPaw.11G067100 Carya illinoinensis HOM05D004382 ORTHO05D005181 9.8e-50 200.3 141 74.5
CsaV3_4G007600 Cucumis sativus L. HOM05D004382 ORTHO05D005181 9.8e-50 200.3 141 77.3
Potri.001G438800 Populus trichocarpa HOM05D004382 ORTHO05D005181 9.8e-50 200.3 142 76.1
TPR.G10344 Trifolium pratense HOM05D004382 ORTHO05D005181 1.3e-49 199.9 140 75.7
PGSC0003DMG400022241 Solanum tuberosum HOM05D004382 ORTHO05D005181 1.7e-49 199.5 141 75.9
HanXRQChr08g0232801 Helianthus annuus HOM05D004382 ORTHO05D005181 2.2e-49 199.1 140 76.4
Peaxi162Scf00232g01129 Petunia axillaris HOM05D004382 ORTHO05D005181 2.2e-49 199.1 141 75.2
Ca_03704_v3 Cicer arietinum L. HOM05D004382 ORTHO05D005181 3.7e-49 198.4 140 75.0
Lalb_Chr01g0015971 Lupinus albus HOM05D004382 ORTHO05D005181 3.7e-49 198.4 135 75.6
Manes.15G102500 Manihot esculenta HOM05D004382 ORTHO05D005181 3.7e-49 198.4 141 74.5
Sabra11G0127600 Salix brachista HOM05D004382 ORTHO05D005181 3.7e-49 198.4 141 73.8
BcaC03g15860 Brassica carinata HOM05D004382 ORTHO05D005181 4.9e-49 198.0 139 71.9
A02p22470 Brassica napus HOM05D004382 ORTHO05D005181 4.9e-49 198.0 139 71.9
C02p36150 Brassica napus HOM05D004382 ORTHO05D005181 4.9e-49 198.0 139 71.9
BolC2t09629H Brassica oleracea HOM05D004382 ORTHO05D005181 4.9e-49 198.0 139 71.9
BraA02t07252Z Brassica rapa HOM05D004382 ORTHO05D005181 4.9e-49 198.0 139 71.9
Nitab4.5_0000313g0040 Nicotiana tabacum HOM05D004382 ORTHO05D005181 4.9e-49 198.0 141 73.8
Potri.001G438700 Populus trichocarpa HOM05D004382 ORTHO05D005181 4.9e-49 198.0 140 73.6
unitig_8.g4771 Utricularia gibba HOM05D004382 ORTHO05D005181 4.9e-49 198.0 141 73.0
Potri.011G142200 Populus trichocarpa HOM05D004382 ORTHO05D005181 8.3e-49 197.2 140 73.6
BcaC08g45389 Brassica carinata HOM05D004382 ORTHO05D005181 1.1e-48 196.8 142 71.8
A07p44190 Brassica napus HOM05D004382 ORTHO05D005181 1.1e-48 196.8 141 73.0
BraA07t31927Z Brassica rapa HOM05D004382 ORTHO05D005181 1.1e-48 196.8 141 73.0
ClCG11G016280 Citrullus lanatus HOM05D004382 ORTHO05D005181 1.1e-48 196.8 141 73.8
Nn3g20146 Nelumbo nucifera HOM05D002089 ORTHO05D011346 1.1e-48 196.8 134 77.6
Aa31LG4G1950 Aethionema arabicum HOM05D004382 ORTHO05D005181 1.8e-48 196.1 142 71.8
C06p30200 Brassica napus HOM05D004382 ORTHO05D005181 1.8e-48 196.1 142 71.8
BolC6t38183H Brassica oleracea HOM05D004382 ORTHO05D005181 1.8e-48 196.1 142 71.8
BcaB02g07194 Brassica carinata HOM05D004382 ORTHO05D005181 2.4e-48 195.7 142 71.8
Psat1g002320 Pisum sativum HOM05D004382 ORTHO05D005181 2.4e-48 195.7 140 74.3
Solyc07g066310.3 Solanum lycopersicum HOM05D004382 ORTHO05D005181 2.4e-48 195.7 141 74.5
Sopen07g034490 Solanum pennellii HOM05D004382 ORTHO05D005181 2.4e-48 195.7 141 74.5
CARHR072720 Cardamine hirsuta HOM05D004382 ORTHO05D005181 3.2e-48 195.3 141 71.6
MD10G1198300 Malus domestica HOM05D004382 ORTHO05D005181 3.2e-48 195.3 141 70.9
A07p27340 Brassica napus HOM05D004382 ORTHO05D005181 4.1e-48 194.9 142 71.8
BraA07t30375Z Brassica rapa HOM05D004382 ORTHO05D005181 4.1e-48 194.9 142 71.8
TAR627G0744 Trochodendron aralioides HOM05D004382 ORTHO05D005181 4.1e-48 194.9 133 74.4
Thhalv10019302m.g Eutrema salsugineum HOM05D004382 ORTHO05D005181 5.4e-48 194.5 142 70.4
FAN25G3309 Fragaria x ananassa HOM05D004382 ORTHO05D005181 5.4e-48 194.5 141 71.6
BcaC08g47468 Brassica carinata HOM05D004382 ORTHO05D005181 7.0e-48 194.1 141 71.6
C06p52920 Brassica napus HOM05D004382 ORTHO05D005181 7.0e-48 194.1 141 71.6
BolC6t40310H Brassica oleracea HOM05D004382 ORTHO05D005181 7.0e-48 194.1 141 71.6
Gorai.002G032900 Gossypium raimondii HOM05D004382 ORTHO05D005181 7.0e-48 194.1 144 72.9
ATR1098G153 Amborella trichopoda HOM05D004382 ORTHO05D005181 9.2e-48 193.7 142 71.8
EL10Ac4g08547 Beta vulgaris HOM05D004382 ORTHO05D005181 9.2e-48 193.7 141 73.8
AUR62004366 Chenopodium quinoa HOM05D004382 ORTHO05D005181 9.2e-48 193.7 142 73.2
BcaB05g25168 Brassica carinata HOM05D004382 ORTHO05D005181 1.2e-47 193.4 142 70.4
Sp5g34090 Schrenkiella parvula HOM05D004382 ORTHO05D005181 1.2e-47 193.4 142 69.7
AT1G79040 Arabidopsis thaliana HOM05D004382 ORTHO05D005181 1.6e-47 193.0 141 71.6
BcaB02g08662 Brassica carinata HOM05D004382 ORTHO05D005181 1.6e-47 193.0 141 70.9
DCAR_013749 Daucus carota HOM05D004382 ORTHO05D005181 1.6e-47 193.0 141 71.6
FAN21G1818 Fragaria x ananassa HOM05D004382 ORTHO05D005181 2.0e-47 192.6 141 70.9
Nitab4.5_0001791g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 2.0e-47 192.6 143 72.0
FvH4_3g16050 Fragaria vesca HOM05D004382 ORTHO05D005181 2.7e-47 192.2 141 71.6
FAN11G1612 Fragaria x ananassa HOM05D004382 ORTHO05D005181 2.7e-47 192.2 141 71.6
Lalb_Chr03g0031561 Lupinus albus HOM05D004382 ORTHO05D005181 2.7e-47 192.2 143 68.5
Medtr2g064650 Medicago truncatula HOM05D004382 ORTHO05D005181 2.7e-47 192.2 140 73.6
Carub.0002s2591 Capsella rubella HOM05D004382 ORTHO05D005181 3.5e-47 191.8 141 70.9
RcHm_v2.0_Chr5g0027021 Rosa chinensis HOM05D004382 ORTHO05D005181 5.9e-47 191.0 141 71.6
AUR62022575 Chenopodium quinoa HOM05D004382 ORTHO05D005181 1.0e-46 190.3 142 71.8
HanXRQChr05g0160651 Helianthus annuus HOM05D004382 ORTHO05D005181 1.0e-46 190.3 140 72.9
HPP92_016563 Vanilla planifolia HOM05D004382 ORTHO05D005181 1.7e-46 189.5 140 70.0
DCAR_009633 Daucus carota HOM05D004382 ORTHO05D005181 2.3e-46 189.1 140 70.7
Gohir.A01G037100 Gossypium hirsutum HOM05D004382 ORTHO05D005181 3.0e-46 188.7 144 70.1
Rhsim04G0006200 Rhododendron simsii HOM05D004382 ORTHO05D005181 3.0e-46 188.7 141 75.2
DCAR_016816 Daucus carota HOM05D004382 ORTHO05D005181 3.9e-46 188.3 140 72.1
Sc16g0003480 Simmondsia chinensis HOM05D004382 ORTHO05D005181 3.9e-46 188.3 141 73.0
Ah.08g216320 Amaranthus hybridus HOM05D004382 ORTHO05D005181 5.0e-46 188.0 141 73.0
Eucgr.F01447 Eucalyptus grandis HOM05D004382 ORTHO05D005181 5.0e-46 188.0 156 67.9
THA.LOC104812349 Tarenaya hassleriana HOM05D004382 ORTHO05D005181 1.1e-45 186.8 127 76.4
ECA236G0888 Erigeron canadensis HOM05D004382 ORTHO05D005181 1.5e-45 186.4 140 69.3
Aqoxy1G01569 Aquilegia oxysepala HOM05D004382 ORTHO05D005181 2.5e-45 185.7 142 71.8
Sed0016780 Sechium edule HOM05D004382 ORTHO05D005181 5.6e-45 184.5 136 72.8
CDE04G0985 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 1.6e-44 183.0 133 70.7
Manes.03G082900 Manihot esculenta HOM05D004382 ORTHO05D005181 1.6e-44 183.0 140 72.9
Sabra11G0127700 Salix brachista HOM05D004382 ORTHO05D005181 2.1e-44 182.6 142 71.8
Lalb_Chr25g0285191 Lupinus albus HOM05D004382 ORTHO05D005181 4.7e-44 181.4 136 71.3
vmacro09788 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 4.7e-44 181.4 143 70.6
AL2G39500 Arabidopsis lyrata HOM05D004382 ORTHO05D005181 6.2e-44 181.0 133 70.7
CDE12G0390 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 1.0e-43 180.3 133 69.2
Hund10309 Selenicereus undatus HOM05D004382 ORTHO05D005181 3.1e-43 178.7 118 77.1
PSO541G3267 Papaver somniferum HOM05D004382 ORTHO05D005181 4.0e-43 178.3 143 67.8
PSO675G7775 Papaver somniferum HOM05D004382 ORTHO05D005181 4.0e-43 178.3 143 67.8
Solyc12g017250.2 Solanum lycopersicum HOM05D004382 ORTHO05D005181 5.2e-43 177.9 136 69.1
MBI02_g25371_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 8.9e-43 177.2 142 70.4
CDE11G0376 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 2.0e-42 176.0 140 67.1
Sopen12g008070 Solanum pennellii HOM05D004382 ORTHO05D005181 4.4e-42 174.9 136 68.4
Lsat_1_v5_gn_7_116120 Lactuca sativa HOM05D004382 ORTHO05D005181 1.1e-40 170.2 140 63.6
Os08g0200300 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 1.0e-38 163.7 139 64.7
Dinv19628 Davidia involucrata HOM05D006828 ORTHO05D008312 3.9e-38 161.8 88 89.8
Sabra16G0296700 Salix brachista HOM05D004382 ORTHO05D005181 3.9e-38 161.8 160 60.6
Zm00001eb171230 Zea mays HOM05D004382 ORTHO05D005181 1.1e-37 160.2 137 62.0
Rhsim06G0237200 Rhododendron simsii HOM05D006828 ORTHO05D008312 3.3e-37 158.7 89 86.5
SEGI_14655 Sequoiadendron giganteum HOM05D004382 ORTHO05D005181 3.3e-37 158.7 139 61.2
vmacro11652 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 2.8e-36 155.6 154 60.4
Os07g0147500 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 8.9e-35 150.6 138 57.2
Os07g0147550 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 8.9e-35 150.6 141 58.2
Eucgr.F03186 Eucalyptus grandis HOM05D004382 ORTHO05D005181 4.4e-34 148.3 105 71.4
Gohir.D01G024400 Gossypium hirsutum HOM05D004382 ORTHO05D005181 1.1e-32 143.7 114 67.5
Mapoly0001s0109 Marchantia polymorpha HOM05D004382 ORTHO05D005181 1.1e-32 143.7 138 58.0
SMO134G0197 Selaginella moellendorffii HOM05D004382 ORTHO05D005181 5.4e-32 141.4 116 62.9
Pp3c27_2340 Physcomitrium patens HOM05D004382 ORTHO05D005181 1.1e-29 133.7 117 59.8
PGSC0003DMG400002312 Solanum tuberosum HOM05D004382 ORTHO05D005181 2.5e-29 132.5 136 58.1
Mapoly0006s0055 Marchantia polymorpha HOM05D004382 ORTHO05D005181 2.1e-28 129.4 145 51.7
Pp3c5_4230 Physcomitrium patens HOM05D004382 ORTHO05D005181 2.1e-28 129.4 119 58.8
MBI18_g37150_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 4.7e-28 128.3 141 56.7
Cpa.g.c37194 Carica papaya HOM05D004382 ORTHO05D005181 8.1e-28 127.5 90 77.8
Pp3c16_5650 Physcomitrium patens HOM05D004382 ORTHO05D005181 1.1e-27 127.1 117 57.3
Pp3c27_2320 Physcomitrium patens HOM05D004382 ORTHO05D005181 6.8e-27 124.4 110 61.8
AagrBONN_evm.TU.Sc2ySwM_228.2640 Anthoceros agrestis HOM05D004382 ORTHO05D005181 2.6e-26 122.5 118 58.5
MELO3C016181.2 Cucumis melo HOM05D004382 ORTHO05D005181 1.1e-24 117.1 91 71.4
PGR083G0343 Punica granatum HOM05D004382 ORTHO05D005181 2.4e-24 115.9 79 70.9
Cpa.g.c38697 Carica papaya HOM05D004382 ORTHO05D005181 1.5e-21 106.7 53 92.5
PRCOL_00003342 Prasinoderma coloniale HOM05D004382 ORTHO05D005181 2.1e-20 102.8 132 42.4
CBR_g30109 Chara braunii HOM05D000004 ORTHO05D000002 2.4e-19 99.4 67 67.2
Haze_08525 Corylus avellana HOM05D004382 ORTHO05D005181 3.1e-19 99.0 139 45.3
Atru.chr6.732 Acer truncatum HOM05D004382 ORTHO05D005181 2.1e-15 86.3 79 59.5
Cre06.g261000 Chlamydomonas reinhardtii HOM05D004382 ORTHO05D005181 6.0e-15 84.7 80 56.2
TAR626G0945 Trochodendron aralioides HOM05D004382 ORTHO05D005181 5.1e-14 81.6 74 63.5
TPR.G25891 Trifolium pratense HOM05D004382 ORTHO05D005181 3.5e-07 58.9 32 93.8


User provided reference genes

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