Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.14478 Avicennia marina HOM05D004814 ORTHO05D005778 2.2e-97 359.0 188 100.0
SGA_v2.0_scaffold8G04398 Striga asiatica HOM05D004814 ORTHO05D005778 6.3e-68 261.2 188 75.0
Solyc10g006030.3 Solanum lycopersicum HOM05D004814 ORTHO05D005778 2.1e-63 246.1 185 73.0
DCAR_013223 Daucus carota HOM05D004814 ORTHO05D005778 3.6e-63 245.4 191 71.2
PGSC0003DMG400014378 Solanum tuberosum HOM05D004814 ORTHO05D005778 3.6e-63 245.4 185 73.5
Oeu057089.1 Olea europaea HOM05D004814 ORTHO05D005778 6.1e-63 244.6 191 73.3
Sopen10g001990 Solanum pennellii HOM05D004814 ORTHO05D005778 8.0e-63 244.2 185 73.0
Nitab4.5_0006756g0010 Nicotiana tabacum HOM05D004814 ORTHO05D005778 4.0e-62 241.9 187 71.1
Dinv10318 Davidia involucrata HOM05D004814 ORTHO05D005778 8.8e-62 240.7 200 70.5
Oeu049351.1 Olea europaea HOM05D004814 ORTHO05D005778 1.2e-61 240.4 192 71.4
CAN.G492.31 Capsicum annuum HOM05D004814 ORTHO05D005778 1.5e-61 240.0 187 70.6
Lsat_1_v5_gn_9_90400 Lactuca sativa HOM05D004814 ORTHO05D005778 9.8e-61 237.3 187 69.5
Nitab4.5_0003491g0010 Nicotiana tabacum HOM05D004814 ORTHO05D005778 1.7e-60 236.5 187 70.1
Cc05_g14790 Coffea canephora HOM05D004814 ORTHO05D005778 2.8e-60 235.7 192 71.4
Dinv40842 Davidia involucrata HOM05D004814 ORTHO05D005778 1.1e-59 233.8 200 68.0
CARHR087710 Cardamine hirsuta HOM05D004814 ORTHO05D005778 1.8e-59 233.0 190 68.4
HanXRQChr03g0061321 Helianthus annuus HOM05D004814 ORTHO05D005778 3.1e-59 232.3 191 68.1
CiPaw.12G136400 Carya illinoinensis HOM05D004814 ORTHO05D005778 1.6e-58 229.9 204 65.7
Hund01909 Selenicereus undatus HOM05D004814 ORTHO05D005778 1.6e-58 229.9 192 68.8
QL08p004842 Quercus lobata HOM05D004814 ORTHO05D005778 2.7e-58 229.2 206 64.6
CSS0025876 Camellia sinensis var. sinensis HOM05D004814 ORTHO05D005778 5.9e-58 228.0 200 66.0
Ah.04g166490 Amaranthus hybridus HOM05D004814 ORTHO05D005778 7.8e-58 227.6 191 68.6
Aqoxy4G02247 Aquilegia oxysepala HOM05D004814 ORTHO05D005778 7.8e-58 227.6 201 65.7
CANSAT11G0174 Cannabis sativa HOM05D004814 ORTHO05D005778 7.8e-58 227.6 205 66.8
Haze_09803 Corylus avellana HOM05D004814 ORTHO05D005778 7.8e-58 227.6 190 68.9
Atru.chr2.3664 Acer truncatum HOM05D004814 ORTHO05D005778 1.0e-57 227.3 195 66.7
unitig_62.g23297 Utricularia gibba HOM05D004814 ORTHO05D005778 1.0e-57 227.3 190 65.8
BcaC05g29209 Brassica carinata HOM05D004814 ORTHO05D005778 2.3e-57 226.1 197 65.5
C05p54820 Brassica napus HOM05D004814 ORTHO05D005778 2.3e-57 226.1 197 65.5
BolC5t34154H Brassica oleracea HOM05D004814 ORTHO05D005778 2.3e-57 226.1 197 65.5
HanXRQChr13g0408121 Helianthus annuus HOM05D004814 ORTHO05D005778 2.9e-57 225.7 190 67.9
Ah.06g181280 Amaranthus hybridus HOM05D004814 ORTHO05D005778 3.8e-57 225.3 190 68.4
Cfa020215 Carpinus fangiana HOM05D004814 ORTHO05D005778 6.6e-57 224.6 206 65.0
Hma1.2p1_0889F.1_g232870 Hydrangea macrophylla HOM05D004814 ORTHO05D005778 8.6e-57 224.2 211 63.0
Aa31LG8G330 Aethionema arabicum HOM05D004814 ORTHO05D005778 1.1e-56 223.8 197 65.5
BraA05t22442Z Brassica rapa HOM05D004814 ORTHO05D005778 1.5e-56 223.4 195 66.7
Ciclev10009615m.g Citrus clementina HOM05D004814 ORTHO05D005778 1.5e-56 223.4 184 66.3
Aa31LG10G250 Aethionema arabicum HOM05D004814 ORTHO05D005778 1.9e-56 223.0 196 65.3
Sc16g0007970 Simmondsia chinensis HOM05D004814 ORTHO05D005778 1.9e-56 223.0 195 65.6
AUR62017069 Chenopodium quinoa HOM05D004814 ORTHO05D005778 2.5e-56 222.6 195 67.2
THA.LOC104822735 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 2.5e-56 222.6 199 64.8
Actinidia30418 Actinidia chinensis HOM05D004814 ORTHO05D005778 4.3e-56 221.9 200 66.0
AL3G24860 Arabidopsis lyrata HOM05D004814 ORTHO05D005778 5.6e-56 221.5 194 66.0
Glyma.08G327500 Glycine max HOM05D004814 ORTHO05D005778 7.3e-56 221.1 210 63.8
TAR629G3287 Trochodendron aralioides HOM05D004814 ORTHO05D005778 7.3e-56 221.1 203 64.5
arahy.Tifrunner.gnm1.ann1.CWZH2K Arachis hypogaea HOM05D004814 ORTHO05D005778 9.5e-56 220.7 211 64.0
arahy.Tifrunner.gnm1.ann1.RG8M6K Arachis hypogaea HOM05D004814 ORTHO05D005778 9.5e-56 220.7 211 64.0
A03p38040 Brassica napus HOM05D004814 ORTHO05D005778 9.5e-56 220.7 194 66.5
Gohir.A01G090000 Gossypium hirsutum HOM05D004814 ORTHO05D005778 9.5e-56 220.7 195 66.7
Gohir.D01G075300 Gossypium hirsutum HOM05D004814 ORTHO05D005778 9.5e-56 220.7 195 66.7
Gorai.002G098500 Gossypium raimondii HOM05D004814 ORTHO05D005778 9.5e-56 220.7 195 66.7
arahy.Tifrunner.gnm1.ann1.0CA1AM Arachis hypogaea HOM05D004814 ORTHO05D005778 1.2e-55 220.3 211 64.0
CsaV3_7G018640 Cucumis sativus L. HOM05D004814 ORTHO05D005778 1.2e-55 220.3 179 69.8
THA.LOC104815700 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 1.2e-55 220.3 198 66.2
AUR62036421 Chenopodium quinoa HOM05D004814 ORTHO05D005778 1.6e-55 219.9 195 66.2
AUR62036427 Chenopodium quinoa HOM05D004814 ORTHO05D005778 1.6e-55 219.9 195 66.2
AUR62040646 Chenopodium quinoa HOM05D004814 ORTHO05D005778 1.6e-55 219.9 195 66.2
Gorai.007G310400 Gossypium raimondii HOM05D004814 ORTHO05D005778 1.6e-55 219.9 194 65.5
TWI39G1010 Tripterygium wilfordii HOM05D004814 ORTHO05D005778 2.8e-55 219.2 206 63.6
GSVIVG01014640001 Vitis vinifera HOM05D004814 ORTHO05D005778 2.8e-55 219.2 198 66.2
BcaNung05270 Brassica carinata HOM05D004814 ORTHO05D005778 3.6e-55 218.8 196 65.8
Thecc.07G016800 Theobroma cacao HOM05D004814 ORTHO05D005778 3.6e-55 218.8 194 64.4
Actinidia05019 Actinidia chinensis HOM05D004814 ORTHO05D005778 4.7e-55 218.4 200 65.5
AT3G13120 Arabidopsis thaliana HOM05D004814 ORTHO05D005778 4.7e-55 218.4 193 63.7
A05p36420 Brassica napus HOM05D004814 ORTHO05D005778 4.7e-55 218.4 195 65.6
FAN21G1289 Fragaria x ananassa HOM05D004814 ORTHO05D005778 4.7e-55 218.4 198 68.2
Gohir.D11G287000 Gossypium hirsutum HOM05D004814 ORTHO05D005778 4.7e-55 218.4 194 64.9
Thhalv10021566m.g Eutrema salsugineum HOM05D004814 ORTHO05D005778 6.1e-55 218.0 195 64.6
Glyma.18G079900 Glycine max HOM05D004814 ORTHO05D005778 6.1e-55 218.0 205 63.9
arahy.Tifrunner.gnm1.ann1.X98J9H Arachis hypogaea HOM05D004814 ORTHO05D005778 8.0e-55 217.6 210 63.8
MELO3C024899.2 Cucumis melo HOM05D004814 ORTHO05D005778 8.0e-55 217.6 209 64.1
FvH4_3g29500 Fragaria vesca HOM05D004814 ORTHO05D005778 8.0e-55 217.6 198 68.2
FAN11G3417 Fragaria x ananassa HOM05D004814 ORTHO05D005778 8.0e-55 217.6 198 68.2
FAN16G2593 Fragaria x ananassa HOM05D004814 ORTHO05D005778 8.0e-55 217.6 198 67.2
Gohir.A11G276900 Gossypium hirsutum HOM05D004814 ORTHO05D005778 8.0e-55 217.6 194 64.4
Lalb_Chr05g0211691 Lupinus albus HOM05D004814 ORTHO05D005778 8.0e-55 217.6 207 61.8
Phvul.006G055300 Phaseolus vulgaris HOM05D004814 ORTHO05D005778 8.0e-55 217.6 209 64.1
Sp3g11290 Schrenkiella parvula HOM05D004814 ORTHO05D005778 8.0e-55 217.6 196 63.3
TWI38G0785 Tripterygium wilfordii HOM05D004814 ORTHO05D005778 8.0e-55 217.6 201 63.2
TAR626G1431 Trochodendron aralioides HOM05D004814 ORTHO05D005778 8.0e-55 217.6 203 63.1
BraA03t12957Z Brassica rapa HOM05D004814 ORTHO05D005778 1.0e-54 217.2 199 64.8
FAN25G3790 Fragaria x ananassa HOM05D004814 ORTHO05D005778 1.0e-54 217.2 193 66.8
EL10Ac4g07605 Beta vulgaris HOM05D004814 ORTHO05D005778 1.4e-54 216.9 197 65.5
ClCG09G021040 Citrullus lanatus HOM05D004814 ORTHO05D005778 1.4e-54 216.9 207 63.8
Peaxi162Scf00900g00010 Petunia axillaris HOM05D004814 ORTHO05D005778 1.4e-54 216.9 185 68.1
C03p46130 Brassica napus HOM05D004814 ORTHO05D005778 1.8e-54 216.5 194 64.9
THA.LOC104810287 Tarenaya hassleriana HOM05D004814 ORTHO05D005778 1.8e-54 216.5 198 62.6
BcaC01g04010 Brassica carinata HOM05D004814 ORTHO05D005778 2.3e-54 216.1 194 64.4
A01p40420 Brassica napus HOM05D004814 ORTHO05D005778 2.3e-54 216.1 198 63.1
BolC3t16886H Brassica oleracea HOM05D004814 ORTHO05D005778 2.3e-54 216.1 194 64.4
BraA01t04077Z Brassica rapa HOM05D004814 ORTHO05D005778 2.3e-54 216.1 198 63.1
Carub.0003s1246 Capsella rubella HOM05D004814 ORTHO05D005778 5.2e-54 214.9 198 65.7
BcaB06g25486 Brassica carinata HOM05D004814 ORTHO05D005778 6.8e-54 214.5 191 64.9
RcHm_v2.0_Chr5g0054381 Rosa chinensis HOM05D004814 ORTHO05D005778 6.8e-54 214.5 198 65.7
MD03G1187000 Malus domestica HOM05D004814 ORTHO05D005778 8.9e-54 214.2 205 64.4
Potri.001G365600 Populus trichocarpa HOM05D004814 ORTHO05D005778 1.2e-53 213.8 200 61.0
Manes.03G139872 Manihot esculenta HOM05D004814 ORTHO05D005778 2.0e-53 213.0 188 66.5
Nn1g03216 Nelumbo nucifera HOM05D004814 ORTHO05D005778 2.0e-53 213.0 202 63.9
HPP92_020399 Vanilla planifolia HOM05D004814 ORTHO05D005778 2.0e-53 213.0 195 64.6
Phvul.001G030600 Phaseolus vulgaris HOM05D004814 ORTHO05D005778 2.6e-53 212.6 207 63.3
Sabra11G0087000 Salix brachista HOM05D004814 ORTHO05D005778 4.4e-53 211.8 210 60.5
Ca_20138_v3 Cicer arietinum L. HOM05D004814 ORTHO05D005778 5.7e-53 211.5 204 63.7
Manes.15G061900 Manihot esculenta HOM05D004814 ORTHO05D005778 5.7e-53 211.5 213 59.6
ECA240G4731 Erigeron canadensis HOM05D001580 ORTHO05D001517 7.5e-53 211.1 140 75.7
Sabra16G0239200 Salix brachista HOM05D004814 ORTHO05D005778 7.5e-53 211.1 214 60.7
COL.COLO4_09806 Corchorus olitorius HOM05D004814 ORTHO05D005778 1.7e-52 209.9 191 63.4
A01p40680 Brassica napus HOM05D004814 ORTHO05D005778 2.2e-52 209.5 115 88.7
CSS0019029 Camellia sinensis var. sinensis HOM05D004814 ORTHO05D005778 2.2e-52 209.5 112 91.1
Eucgr.F03697 Eucalyptus grandis HOM05D004814 ORTHO05D005778 2.9e-52 209.1 189 66.1
Sed0017349 Sechium edule HOM05D004814 ORTHO05D005778 2.9e-52 209.1 190 66.8
Duzib213G0234 Durio zibethinus HOM05D004814 ORTHO05D005778 3.7e-52 208.8 193 62.7
PSO541G0969 Papaver somniferum HOM05D004814 ORTHO05D005778 3.7e-52 208.8 202 60.9
Potri.011G092800 Populus trichocarpa HOM05D004814 ORTHO05D005778 3.7e-52 208.8 206 60.7
PSO675G8482 Papaver somniferum HOM05D004814 ORTHO05D005778 4.9e-52 208.4 202 60.4
CDE10G1086 Ceratophyllum demersum HOM05D004814 ORTHO05D005778 1.8e-51 206.5 111 90.1
PGR031G1774 Punica granatum HOM05D004814 ORTHO05D005778 1.8e-51 206.5 193 64.2
Prupe.4G239600 Prunus persica HOM05D004814 ORTHO05D005778 4.1e-51 205.3 201 61.7
vmacro22713 Vaccinium macrocarpon HOM05D004814 ORTHO05D005778 4.1e-51 205.3 201 60.7
Lj1P888T30 Lonicera japonica HOM05D004814 ORTHO05D005778 5.4e-51 204.9 104 96.2
Rhsim06G0227300 Rhododendron simsii HOM05D004814 ORTHO05D005778 9.2e-51 204.1 202 59.9
MD11G1202000 Malus domestica HOM05D004814 ORTHO05D005778 1.2e-50 203.8 201 60.7
Cpa.g.sc12.175 Carica papaya HOM05D004814 ORTHO05D005778 2.0e-50 203.0 104 95.2
VMungo0248G0001 Vigna mungo HOM05D004814 ORTHO05D005778 2.0e-50 203.0 104 95.2
Psat5g170120 Pisum sativum HOM05D004814 ORTHO05D005778 2.7e-50 202.6 198 61.1
Actinidia05024 Actinidia chinensis HOM05D004814 ORTHO05D005778 4.6e-50 201.8 185 64.3
ATR0624G087 Amborella trichopoda HOM05D004814 ORTHO05D005778 4.6e-50 201.8 104 94.2
Medtr3g058430 Medicago truncatula HOM05D004814 ORTHO05D005778 7.8e-50 201.1 193 61.7
MSTRG.13015 Avicennia marina HOM05D004814 ORTHO05D005778 1.7e-49 199.9 147 76.9
TPR.G30737 Trifolium pratense HOM05D004814 ORTHO05D005778 2.5e-48 196.1 200 59.5
BraA01t04102Z Brassica rapa HOM05D004814 ORTHO05D005778 7.3e-48 194.5 104 90.4
QL05p065674 Quercus lobata HOM05D004814 ORTHO05D005778 9.5e-48 194.1 119 82.4
Zm00001eb008100 Zea mays HOM05D004814 ORTHO05D005778 9.5e-48 194.1 183 60.1
Os03g0196800 Oryza sativa ssp. japonica HOM05D004814 ORTHO05D005778 1.6e-47 193.4 197 58.4
Zm00001eb401060 Zea mays HOM05D004814 ORTHO05D005778 3.1e-46 189.1 191 58.6
C01p51960 Brassica napus HOM05D004814 ORTHO05D005778 5.2e-46 188.3 177 59.3
QL05p065593 Quercus lobata HOM05D004814 ORTHO05D005778 1.3e-44 183.7 103 89.3
MBI19_g45743_MAGBIO Magnolia biondii HOM05D004814 ORTHO05D005778 2.2e-44 183.0 100 87.0
Pp3c24_19230 Physcomitrium patens HOM05D004814 ORTHO05D005778 2.5e-40 169.5 109 74.3
Pp3c20_8830 Physcomitrium patens HOM05D004814 ORTHO05D005778 3.3e-40 169.1 183 54.1
AagrBONN_evm.TU.Sc2ySwM_117.1321 Anthoceros agrestis HOM05D004814 ORTHO05D005778 5.6e-40 168.3 104 76.9
Mapoly0009s0107 Marchantia polymorpha HOM05D004814 ORTHO05D005778 7.3e-40 167.9 158 60.1
PSO832G2117 Papaver somniferum HOM05D004814 ORTHO05D005778 1.2e-39 167.2 203 52.2
Pp3c8_18990 Physcomitrium patens HOM05D004814 ORTHO05D005778 2.3e-38 162.9 185 53.0
SEGI_32296 Sequoiadendron giganteum HOM05D004814 ORTHO05D005778 7.5e-37 157.9 116 69.0
CBR_g19640 Chara braunii HOM05D004814 ORTHO05D005778 1.2e-34 150.6 142 54.2
SMO228G0012 Selaginella moellendorffii HOM05D004814 ORTHO05D005778 2.8e-31 139.4 115 58.3
MCO07G521 Micromonas commoda HOM05D004814 ORTHO05D005778 2.0e-29 133.3 112 58.0
PRCOL_00000430 Prasinoderma coloniale HOM05D004814 ORTHO05D005778 1.1e-22 110.9 100 51.0
Cre03.g195650 Chlamydomonas reinhardtii HOM05D004814 ORTHO05D005778 5.8e-21 105.1 117 47.0
Cre16.g660150 Chlamydomonas reinhardtii HOM05D001946 ORTHO05D002111 3.1e-06 56.2 99 35.4
PRCOL_00002469 Prasinoderma coloniale HOM05D001946 ORTHO05D002111 4.0e-06 55.8 118 32.2
PGR142G2751 Punica granatum HOM05D001946 ORTHO05D002111 5.3e-06 55.5 99 32.3


User provided reference genes

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