Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.14342 Avicennia marina HOM05D003674 ORTHO05D004226 0.0e+00 1184.5 609 100.0
SalBow1G0286 Salvia bowleyana HOM05D003674 ORTHO05D004226 7.8e-277 956.8 604 79.6
SalBow1G3138 Salvia bowleyana HOM05D003674 ORTHO05D004226 1.1e-275 953.0 623 77.8
Actinidia11076 Actinidia chinensis HOM05D003674 ORTHO05D004226 2.4e-273 945.3 609 77.8
CSS0035927 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 1.9e-270 935.6 609 76.4
Cc05_g07170 Coffea canephora HOM05D003674 ORTHO05D004226 1.3e-268 929.5 606 77.9
unitig_749.g13960 Utricularia gibba HOM05D003674 ORTHO05D004226 1.3e-266 922.9 604 77.0
Actinidia11032 Actinidia chinensis HOM05D003674 ORTHO05D004226 1.5e-264 916.0 609 75.4
Dinv23635 Davidia involucrata HOM05D003674 ORTHO05D004226 2.6e-264 915.2 564 81.6
TWI75G1008 Tripterygium wilfordii HOM05D003674 ORTHO05D004226 8.4e-263 910.2 609 76.4
SGA_v2.0_scaffold322G48614 Striga asiatica HOM05D003674 ORTHO05D004226 3.5e-261 904.8 582 80.9
Oeu017490.2 Olea europaea HOM05D003674 ORTHO05D004226 2.3e-260 902.1 542 83.2
TAR624G0345 Trochodendron aralioides HOM05D003674 ORTHO05D004226 3.0e-260 901.7 609 75.2
Ciclev10014388m.g Citrus clementina HOM05D003674 ORTHO05D004226 5.1e-260 901.0 603 76.5
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 4.3e-259 897.9 609 75.0
Solyc07g053970.3 Solanum lycopersicum HOM05D003674 ORTHO05D004226 1.3e-258 896.3 609 74.9
Sed0011332 Sechium edule HOM05D003674 ORTHO05D004226 1.6e-258 896.0 605 74.0
CAN.G248.4 Capsicum annuum HOM05D003674 ORTHO05D004226 1.4e-257 892.9 607 74.5
RcHm_v2.0_Chr2g0126531 Rosa chinensis HOM05D003674 ORTHO05D004226 3.1e-257 891.7 608 74.8
COL.COLO4_30194 Corchorus olitorius HOM05D003674 ORTHO05D004226 6.5e-255 884.0 606 73.8
RcHm_v2.0_Chr2g0126551 Rosa chinensis HOM05D003674 ORTHO05D004226 1.4e-254 882.9 607 74.1
GSVIVG01020549001 Vitis vinifera HOM05D003674 ORTHO05D004226 1.4e-254 882.9 605 74.0
FvH4_6g26210 Fragaria vesca HOM05D003674 ORTHO05D004226 1.9e-254 882.5 607 73.0
Lalb_Chr22g0356561 Lupinus albus HOM05D003674 ORTHO05D004226 2.5e-254 882.1 606 73.3
MD17G1240200 Malus domestica HOM05D003674 ORTHO05D004226 2.5e-254 882.1 607 73.3
MD09G1247300 Malus domestica HOM05D003674 ORTHO05D004226 7.9e-253 877.1 607 72.3
ECA234G3736 Erigeron canadensis HOM05D003674 ORTHO05D004226 6.7e-252 874.0 609 73.2
arahy.Tifrunner.gnm1.ann1.1TZ75T Arachis hypogaea HOM05D003674 ORTHO05D004226 1.5e-251 872.8 609 71.4
Peaxi162Scf00132g00119 Petunia axillaris HOM05D003674 ORTHO05D004226 4.3e-251 871.3 580 76.4
DCAR_021245 Daucus carota HOM05D003674 ORTHO05D004226 1.6e-250 869.4 601 73.2
CiPaw.03G177300 Carya illinoinensis HOM05D003674 ORTHO05D004226 6.2e-250 867.5 608 71.7
Sc12g0003090 Simmondsia chinensis HOM05D003674 ORTHO05D004226 1.1e-249 866.7 606 72.9
Thecc.02G180000 Theobroma cacao HOM05D003674 ORTHO05D004226 5.3e-249 864.4 606 72.9
Duzib132G0159 Durio zibethinus HOM05D003674 ORTHO05D004226 2.0e-248 862.4 606 72.4
arahy.Tifrunner.gnm1.ann1.1DM7TY Arachis hypogaea HOM05D003674 ORTHO05D004226 5.0e-247 857.8 638 68.2
MELO3C018734.2 Cucumis melo HOM05D003674 ORTHO05D004226 1.4e-246 856.3 605 71.4
CsaV3_7G004450 Cucumis sativus L. HOM05D003674 ORTHO05D004226 2.1e-245 852.4 605 71.1
HanXRQChr10g0297111 Helianthus annuus HOM05D003674 ORTHO05D004226 1.0e-244 850.1 579 74.6
Lsat_1_v5_gn_4_66721 Lactuca sativa HOM05D003674 ORTHO05D004226 5.1e-244 847.8 564 75.4
Cfa014617 Carpinus fangiana HOM05D003674 ORTHO05D004226 1.5e-243 846.3 605 70.6
Glyma.13G296900 Glycine max HOM05D003674 ORTHO05D004226 1.9e-243 845.9 608 70.7
THA.LOC104826033 Tarenaya hassleriana HOM05D003674 ORTHO05D004226 1.9e-243 845.9 606 69.3
Gohir.A03G156500 Gossypium hirsutum HOM05D003674 ORTHO05D004226 2.5e-243 845.5 606 71.0
Glyma.12G204400 Glycine max HOM05D003674 ORTHO05D004226 3.3e-243 845.1 608 70.2
Gorai.005G201400 Gossypium raimondii HOM05D003674 ORTHO05D004226 7.4e-243 844.0 606 70.8
THA.LOC104801172 Tarenaya hassleriana HOM05D003674 ORTHO05D004226 2.8e-242 842.0 631 67.5
Phvul.004G108300 Phaseolus vulgaris HOM05D003674 ORTHO05D004226 4.8e-242 841.3 608 70.9
DCAR_019181 Daucus carota HOM05D003674 ORTHO05D004226 3.1e-241 838.6 603 70.3
Potri.013G131100 Populus trichocarpa HOM05D003674 ORTHO05D004226 2.0e-240 835.9 607 71.0
VMungo0464G1662 Vigna mungo HOM05D003674 ORTHO05D004226 3.4e-240 835.1 614 70.8
AL6G49310 Arabidopsis lyrata HOM05D003674 ORTHO05D004226 4.5e-240 834.7 606 68.5
QL08p038784 Quercus lobata HOM05D003674 ORTHO05D004226 4.5e-240 834.7 635 68.0
Lj3g0012901 Lotus japonicus HOM05D003674 ORTHO05D004226 7.7e-240 833.9 609 70.3
EL10Ac9g20767 Beta vulgaris HOM05D003674 ORTHO05D004226 1.3e-239 833.2 605 70.4
A03p30360 Brassica napus HOM05D003674 ORTHO05D004226 3.8e-239 831.6 608 68.8
BolC9t53217H Brassica oleracea HOM05D003674 ORTHO05D004226 3.8e-239 831.6 606 68.6
BcaC01g06668 Brassica carinata HOM05D003674 ORTHO05D004226 6.5e-239 830.9 608 68.8
A09p02830 Brassica napus HOM05D000230 ORTHO05D000176 6.5e-239 830.9 606 68.8
BraA09t35927Z Brassica rapa HOM05D003674 ORTHO05D004226 6.5e-239 830.9 606 68.8
Sp6g03570 Schrenkiella parvula HOM05D003674 ORTHO05D004226 6.5e-239 830.9 606 69.3
QL08p038841 Quercus lobata HOM05D003674 ORTHO05D004226 1.9e-238 829.3 643 66.7
BcaB01g02542 Brassica carinata HOM05D003674 ORTHO05D004226 2.5e-238 828.9 606 69.0
BcaC04g23961 Brassica carinata HOM05D003674 ORTHO05D004226 2.5e-238 828.9 606 68.6
TPR.G6424 Trifolium pratense HOM05D003674 ORTHO05D004226 3.2e-238 828.6 610 69.2
Aqoxy4G00814 Aquilegia oxysepala HOM05D003674 ORTHO05D004226 1.2e-237 826.6 607 69.4
Carub.0006s3351 Capsella rubella HOM05D003674 ORTHO05D004226 2.1e-237 825.9 606 68.2
CARHR251990 Cardamine hirsuta HOM05D003674 ORTHO05D004226 6.7e-236 820.8 607 67.9
AT4G03560 Arabidopsis thaliana HOM05D003674 ORTHO05D004226 5.7e-235 817.8 606 67.8
Haze_13165 Corylus avellana HOM05D003674 ORTHO05D004226 2.2e-234 815.8 628 67.5
CSS0020583 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 3.7e-234 815.1 609 70.1
BolC3t15980H Brassica oleracea HOM05D003674 ORTHO05D004226 1.1e-233 813.5 597 68.5
BcaB01g01906 Brassica carinata HOM05D003674 ORTHO05D004226 6.9e-233 810.8 606 67.8
Migut.H01178 Erythranthe guttata HOM05D003674 ORTHO05D004226 6.9e-233 810.8 540 78.3
CSS0005418 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 1.2e-232 810.1 579 72.2
Medtr2g090380 Medicago truncatula HOM05D003674 ORTHO05D004226 1.5e-232 809.7 611 67.8
BraA03t12218Z Brassica rapa HOM05D003674 ORTHO05D004226 2.6e-232 808.9 588 69.0
C03p36660 Brassica napus HOM05D003674 ORTHO05D004226 3.4e-232 808.5 588 69.0
Nitab4.5_0000512g0020 Nicotiana tabacum HOM05D003674 ORTHO05D004226 2.5e-230 802.4 583 72.0
Aa31LG5G2940 Aethionema arabicum HOM05D003674 ORTHO05D004226 4.2e-230 801.6 596 68.5
PSO210G7128 Papaver somniferum HOM05D003674 ORTHO05D004226 1.4e-228 796.6 608 67.6
PGR142G3148 Punica granatum HOM05D003674 ORTHO05D004226 1.5e-227 793.1 608 67.6
Psat5g272320 Pisum sativum HOM05D003674 ORTHO05D004226 7.4e-227 790.8 561 70.9
Nitab4.5_0004344g0030 Nicotiana tabacum HOM05D003674 ORTHO05D004226 1.3e-226 790.0 569 72.4
PSO832G0572 Papaver somniferum HOM05D003674 ORTHO05D004226 1.7e-226 789.6 608 66.9
HPP92_008135 Vanilla planifolia HOM05D003674 ORTHO05D004226 8.2e-226 787.3 607 66.4
HanXRQChr06g0179591 Helianthus annuus HOM05D003674 ORTHO05D004226 1.8e-225 786.2 609 67.7
Thhalv10029480m.g Eutrema salsugineum HOM05D003674 ORTHO05D004226 4.5e-224 781.6 606 66.0
Prupe.3G138600 Prunus persica HOM05D003674 ORTHO05D004226 2.2e-223 779.2 607 66.1
Eucgr.K01031 Eucalyptus grandis HOM05D003674 ORTHO05D004226 5.2e-220 768.1 609 65.8
Eucgr.K01030 Eucalyptus grandis HOM05D003674 ORTHO05D004226 5.7e-219 764.6 609 65.4
DCAR_013010 Daucus carota HOM05D003674 ORTHO05D004226 2.2e-218 762.7 633 63.3
FAN05G0320 Fragaria x ananassa HOM05D000230 ORTHO05D000176 2.2e-218 762.7 607 65.7
Eucgr.K01029 Eucalyptus grandis HOM05D003674 ORTHO05D004226 1.8e-217 759.6 609 66.0
FAN09G3196 Fragaria x ananassa HOM05D000230 ORTHO05D004226 2.7e-216 755.7 607 65.2
Manes.13G146400 Manihot esculenta HOM05D003674 ORTHO05D004226 4.5e-216 755.0 514 74.9
Os01g0678500 Oryza sativa ssp. japonica HOM05D003674 ORTHO05D004226 5.9e-216 754.6 605 63.1
Oeu017491.1 Olea europaea HOM05D003674 ORTHO05D004226 4.7e-213 745.0 528 73.5
DCAR_013011 Daucus carota HOM05D003674 ORTHO05D004226 3.0e-212 742.3 629 60.7
QL08p038913 Quercus lobata HOM05D003674 ORTHO05D004226 4.0e-212 741.9 716 57.5
ClCG07G002890 Citrullus lanatus HOM05D003674 ORTHO05D004226 7.5e-211 737.6 608 63.8
Rhsim06G0142000 Rhododendron simsii HOM05D003674 ORTHO05D004226 4.8e-210 734.9 483 74.9
Cpa.g.sc848.1 Carica papaya HOM05D003674 ORTHO05D004226 3.1e-209 732.3 483 75.2
Zm00001eb360320 Zea mays HOM05D003674 ORTHO05D004226 9.4e-206 720.7 581 62.7
Sabra13G0110700 Salix brachista HOM05D003674 ORTHO05D004226 2.7e-205 719.2 713 57.5
Hund01095 Selenicereus undatus HOM05D003674 ORTHO05D004226 1.4e-196 690.3 532 65.8
AUR62037356 Chenopodium quinoa HOM05D003674 ORTHO05D004226 9.8e-195 684.1 605 60.8
Sabra13G0110800 Salix brachista HOM05D003674 ORTHO05D004226 2.4e-193 679.5 698 56.3
Oeu058850.1 Olea europaea HOM05D003674 ORTHO05D004226 2.7e-192 676.0 417 81.3
MBI06_g04180_MAGBIO Magnolia biondii HOM05D003674 ORTHO05D004226 1.2e-189 667.2 484 71.1
PSO675G3793 Papaver somniferum HOM05D003674 ORTHO05D004226 1.0e-188 664.1 604 57.6
CAN.G1472.4 Capsicum annuum HOM05D003674 ORTHO05D004226 4.4e-187 658.7 544 62.7
Ah.01g004260 Amaranthus hybridus HOM05D003674 ORTHO05D004226 3.7e-186 655.6 590 60.3
Mapoly0002s0274 Marchantia polymorpha HOM05D003674 ORTHO05D004226 5.0e-183 645.2 617 53.3
vmacro12305 Vaccinium macrocarpon HOM05D003674 ORTHO05D004226 1.9e-182 643.3 516 65.7
Peaxi162Scf00132g00117 Petunia axillaris HOM05D003674 ORTHO05D004226 6.8e-180 634.8 569 59.8
Pp3c15_12230 Physcomitrium patens HOM05D003674 ORTHO05D004226 5.8e-179 631.7 615 53.0
Pp3c1_6270 Physcomitrium patens HOM05D003674 ORTHO05D004226 1.3e-178 630.6 611 54.3
Pp3c1_6272 Physcomitrium patens HOM05D003674 ORTHO05D004226 1.3e-178 630.6 611 54.3
FAN02G2237 Fragaria x ananassa HOM05D003674 ORTHO05D004226 6.2e-173 611.7 629 54.8
AagrBONN_evm.TU.Sc2ySwM_344.5080 Anthoceros agrestis HOM05D003674 ORTHO05D004226 4.4e-171 605.5 608 51.6
CiPaw.04G126100 Carya illinoinensis HOM05D003674 ORTHO05D004226 3.3e-166 589.3 404 72.8
AUR62042592 Chenopodium quinoa HOM05D003674 ORTHO05D004226 6.0e-160 568.5 605 53.9
TAR624G0173 Trochodendron aralioides HOM05D003674 ORTHO05D004226 1.1e-158 564.3 366 75.4
MSTRG.14332 Avicennia marina HOM05D003674 ORTHO05D004226 1.8e-140 503.8 314 80.6
Hma1.2p1_2586F.1_g324940 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 5.2e-111 406.0 266 77.8
Gohir.D02G179566 Gossypium hirsutum HOM05D003674 ORTHO05D004226 3.7e-109 399.8 284 70.1
Gohir.D02G179632 Gossypium hirsutum HOM05D003674 ORTHO05D004226 1.0e-103 381.7 305 65.6
ATR0737G001 Amborella trichopoda HOM05D003674 ORTHO05D004226 3.4e-94 350.1 277 64.3
Nn1g06551 Nelumbo nucifera HOM05D003674 ORTHO05D004226 6.5e-90 335.9 233 70.8
MSTRG.14334 Avicennia marina HOM05D003674 ORTHO05D004226 3.2e-89 333.6 212 80.7
Ca_01498_v3 Cicer arietinum L. HOM05D003674 ORTHO05D004226 1.6e-88 331.3 233 70.8
Hma1.2p1_1937F.1_g308270 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 2.6e-86 323.9 210 76.7
Nn1g06549 Nelumbo nucifera HOM05D003674 ORTHO05D004226 5.9e-83 312.8 203 78.8
CiPaw.04G126200 Carya illinoinensis HOM05D003674 ORTHO05D004226 2.3e-79 300.8 197 77.2
Lsat_1_v5_gn_4_64281 Lactuca sativa HOM05D003674 ORTHO05D004226 3.0e-79 300.4 483 39.3
TAR624G0523 Trochodendron aralioides HOM05D003674 ORTHO05D004226 1.4e-76 291.6 211 71.6
ATR0737G184 Amborella trichopoda HOM05D003674 ORTHO05D004226 4.0e-71 273.5 196 71.9
Nn1g06550 Nelumbo nucifera HOM05D003674 ORTHO05D004226 3.2e-68 263.8 172 76.2
Pp3c18_10190 Physcomitrium patens HOM05D003674 ORTHO05D004226 3.0e-66 257.3 575 31.3
Pp3c14_20770 Physcomitrium patens HOM05D003674 ORTHO05D004226 3.3e-65 253.8 559 30.1
Pp3c1_28370 Physcomitrium patens HOM05D003674 ORTHO05D004226 1.6e-64 251.5 555 31.2
Pp3c2_10230 Physcomitrium patens HOM05D003674 ORTHO05D004226 5.8e-62 243.0 555 31.4
Pp3c21_11410 Physcomitrium patens HOM05D003674 ORTHO05D004226 2.7e-59 234.2 559 29.7
Mapoly0062s0036 Marchantia polymorpha HOM05D003674 ORTHO05D004226 5.6e-57 226.5 561 28.9
Pp3c19_18680 Physcomitrium patens HOM05D003674 ORTHO05D004226 2.0e-54 218.0 488 29.5
Mapoly0050s0061 Marchantia polymorpha HOM05D003674 ORTHO05D004226 9.9e-54 215.7 562 30.1
MSTRG.14339 Avicennia marina HOM05D003674 ORTHO05D004226 2.2e-53 214.5 125 84.8
MSTRG.14335 Avicennia marina HOM05D003674 ORTHO05D004226 1.4e-52 211.8 127 80.3
Ca_01497_v3 Cicer arietinum L. HOM05D003674 ORTHO05D004226 5.1e-50 203.4 334 42.5
Oeu010988.1 Olea europaea HOM05D003674 ORTHO05D004226 6.6e-50 203.0 125 79.2
CDE08G1051 Ceratophyllum demersum HOM05D003674 ORTHO05D004226 8.1e-48 196.1 142 70.4
Hma1.2p1_1836F.1_g304720 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 1.1e-47 195.7 123 79.7
CDE06G1319 Ceratophyllum demersum HOM05D003674 ORTHO05D004226 1.4e-47 195.3 151 62.9
SHI10407 Sapria himalayana HOM05D003674 ORTHO05D004226 7.6e-46 189.5 144 68.8
Hma1.2p1_1145F.1_g261410 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 8.4e-45 186.0 121 76.9
SHI10399 Sapria himalayana HOM05D003674 ORTHO05D004226 1.1e-44 185.7 310 39.7
Pp3c3_16950 Physcomitrium patens HOM05D003674 ORTHO05D004226 6.0e-43 179.9 507 27.0
Oeu030714.1 Olea europaea HOM05D003674 ORTHO05D004226 2.2e-37 161.4 116 75.0
CBR_g54426 Chara braunii HOM05D003674 ORTHO05D004226 4.6e-35 153.7 324 31.8
MSTRG.14337 Avicennia marina HOM05D003674 ORTHO05D004226 1.3e-34 152.1 97 78.4
Nitab4.5_0000638g0280 Nicotiana tabacum HOM05D003674 ORTHO05D004226 2.5e-33 147.9 146 56.8
Nitab4.5_0012835g0020 Nicotiana tabacum HOM05D003674 ORTHO05D004226 1.8e-31 141.7 149 49.7
SEGI_23599 Sequoiadendron giganteum HOM05D003674 ORTHO05D004226 6.4e-29 133.3 83 71.1
SHI10401 Sapria himalayana HOM05D003674 ORTHO05D004226 2.3e-26 124.8 113 58.4
SHI10406 Sapria himalayana HOM05D003674 ORTHO05D004226 1.8e-23 115.2 140 49.3
PGSC0003DMG400018342 Solanum tuberosum HOM05D003674 ORTHO05D004226 3.1e-23 114.4 95 63.2
CBR_g41145 Chara braunii HOM05D003674 ORTHO05D004226 8.4e-21 106.3 160 34.4
Hma1.2p1_1145F.1_g261420 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 1.8e-18 98.6 61 78.7
vmacro12304 Vaccinium macrocarpon HOM05D003674 ORTHO05D004226 1.5e-14 85.5 75 56.0
Nitab4.5_0000638g0270 Nicotiana tabacum HOM05D003674 ORTHO05D004226 3.4e-14 84.3 73 60.3
SEGI_04644 Sequoiadendron giganteum HOM05D003674 ORTHO05D004226 2.3e-10 71.6 72 51.4
Cre12.g532350 Chlamydomonas reinhardtii HOM05D009333 ORTHO05D011489 3.9e-10 70.9 263 24.7
MCO16G144 Micromonas commoda HOM05D009333 ORTHO05D011489 1.1e-09 69.3 231 29.4
BcaC01g01194 Brassica carinata HOM05D003674 ORTHO05D004226 1.5e-09 68.9 54 53.7
MCO13G580 Micromonas commoda HOM05D009333 ORTHO05D011489 1.9e-09 68.6 220 26.8
MCO14G402 Micromonas commoda HOM05D009333 ORTHO05D011489 4.3e-09 67.4 451 23.5
MCO04G064 Micromonas commoda HOM05D009333 ORTHO05D011489 7.4e-09 66.6 302 24.2
PRCOL_00003146 Prasinoderma coloniale HOM05D009333 ORTHO05D011489 7.4e-09 66.6 214 27.1
SEGI_38669 Sequoiadendron giganteum HOM05D003674 ORTHO05D004226 9.7e-09 66.2 77 54.5
Cre07.g333535 Chlamydomonas reinhardtii HOM05D009333 ORTHO05D011489 1.7e-08 65.5 291 23.7
MSTRG.14344 Avicennia marina HOM05D003674 ORTHO05D004226 2.8e-08 64.7 31 100.0
Hma1.2p1_1836F.1_g304710 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 3.7e-08 64.3 48 68.8
MCO03G344 Micromonas commoda HOM05D009333 ORTHO05D011489 1.8e-07 62.0 233 28.3
Nitab4.5_0012835g0030 Nicotiana tabacum HOM05D003674 ORTHO05D004226 2.0e-06 58.5 35 74.3
MCO16G469 Micromonas commoda HOM05D009333 ORTHO05D011489 2.6e-06 58.2 286 23.1
Cre16.g667451 Chlamydomonas reinhardtii HOM05D009333 ORTHO05D011489 3.4e-06 57.8 268 24.3


User provided reference genes

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