Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.14339 Avicennia marina HOM05D003674 ORTHO05D004226 2.9e-61 238.4 125 100.0
MSTRG.14334 Avicennia marina HOM05D003674 ORTHO05D004226 2.5e-60 235.3 125 97.6
Migut.H01178 Erythranthe guttata HOM05D003674 ORTHO05D004226 2.6e-54 215.3 125 87.2
MSTRG.14342 Avicennia marina HOM05D003674 ORTHO05D004226 1.0e-53 213.4 125 84.8
SGA_v2.0_scaffold322G48614 Striga asiatica HOM05D003674 ORTHO05D004226 6.5e-53 210.7 125 84.8
Oeu017490.2 Olea europaea HOM05D003674 ORTHO05D004226 2.5e-52 208.8 125 83.2
HanXRQChr10g0297111 Helianthus annuus HOM05D003674 ORTHO05D004226 7.2e-52 207.2 125 81.6
ClCG07G002890 Citrullus lanatus HOM05D003674 ORTHO05D004226 1.0e-50 203.4 125 79.2
CSS0005418 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 1.4e-50 203.0 125 80.0
CSS0020583 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 1.4e-50 203.0 125 80.0
Dinv23635 Davidia involucrata HOM05D003674 ORTHO05D004226 1.4e-50 203.0 125 80.0
CARHR251990 Cardamine hirsuta HOM05D003674 ORTHO05D004226 4.0e-50 201.4 125 77.6
Cpa.g.sc848.1 Carica papaya HOM05D003674 ORTHO05D004226 4.0e-50 201.4 125 79.2
CsaV3_7G004450 Cucumis sativus L. HOM05D003674 ORTHO05D004226 6.7e-50 200.7 125 78.4
SalBow1G3138 Salvia bowleyana HOM05D003674 ORTHO05D004226 6.7e-50 200.7 125 78.4
TWI75G1008 Tripterygium wilfordii HOM05D003674 ORTHO05D004226 6.7e-50 200.7 125 79.2
Carub.0006s3351 Capsella rubella HOM05D003674 ORTHO05D004226 8.8e-50 200.3 125 76.8
AT4G03560 Arabidopsis thaliana HOM05D003674 ORTHO05D004226 1.2e-49 199.9 125 76.0
SalBow1G0286 Salvia bowleyana HOM05D003674 ORTHO05D004226 1.2e-49 199.9 125 78.4
Actinidia11076 Actinidia chinensis HOM05D003674 ORTHO05D004226 1.5e-49 199.5 125 79.2
Cc05_g07170 Coffea canephora HOM05D003674 ORTHO05D004226 1.5e-49 199.5 125 80.8
MELO3C018734.2 Cucumis melo HOM05D003674 ORTHO05D004226 1.5e-49 199.5 125 77.6
THA.LOC104826033 Tarenaya hassleriana HOM05D003674 ORTHO05D004226 1.5e-49 199.5 125 76.0
BcaB01g01906 Brassica carinata HOM05D003674 ORTHO05D004226 2.0e-49 199.1 125 77.6
A09p02830 Brassica napus HOM05D000230 ORTHO05D000176 2.0e-49 199.1 125 77.6
BraA09t35927Z Brassica rapa HOM05D003674 ORTHO05D004226 2.0e-49 199.1 125 77.6
Prupe.3G138600 Prunus persica HOM05D003674 ORTHO05D004226 2.0e-49 199.1 125 78.4
Sed0011332 Sechium edule HOM05D003674 ORTHO05D004226 2.0e-49 199.1 125 76.8
BcaC04g23961 Brassica carinata HOM05D003674 ORTHO05D004226 2.6e-49 198.7 125 76.8
BolC9t53217H Brassica oleracea HOM05D003674 ORTHO05D004226 2.6e-49 198.7 125 76.8
Sp6g03570 Schrenkiella parvula HOM05D003674 ORTHO05D004226 2.6e-49 198.7 125 77.6
THA.LOC104801172 Tarenaya hassleriana HOM05D003674 ORTHO05D004226 3.3e-49 198.4 125 76.0
Gohir.A03G156500 Gossypium hirsutum HOM05D003674 ORTHO05D004226 4.4e-49 198.0 125 76.0
Gohir.D02G179632 Gossypium hirsutum HOM05D003674 ORTHO05D004226 4.4e-49 198.0 125 76.0
BcaB01g02542 Brassica carinata HOM05D003674 ORTHO05D004226 5.7e-49 197.6 125 77.6
BcaC01g06668 Brassica carinata HOM05D003674 ORTHO05D004226 5.7e-49 197.6 125 77.6
A03p30360 Brassica napus HOM05D003674 ORTHO05D004226 5.7e-49 197.6 125 77.6
C03p36660 Brassica napus HOM05D003674 ORTHO05D004226 5.7e-49 197.6 125 77.6
BolC3t15980H Brassica oleracea HOM05D003674 ORTHO05D004226 5.7e-49 197.6 125 77.6
BraA03t12218Z Brassica rapa HOM05D003674 ORTHO05D004226 5.7e-49 197.6 125 77.6
Gorai.005G201400 Gossypium raimondii HOM05D003674 ORTHO05D004226 5.7e-49 197.6 125 76.0
HanXRQChr06g0179591 Helianthus annuus HOM05D003674 ORTHO05D004226 5.7e-49 197.6 125 77.6
Sc12g0003090 Simmondsia chinensis HOM05D003674 ORTHO05D004226 5.7e-49 197.6 124 79.0
Aa31LG5G2940 Aethionema arabicum HOM05D003674 ORTHO05D004226 7.5e-49 197.2 125 75.2
Ah.01g004260 Amaranthus hybridus HOM05D003674 ORTHO05D004226 9.7e-49 196.8 125 79.2
EL10Ac9g20767 Beta vulgaris HOM05D003674 ORTHO05D004226 9.7e-49 196.8 125 80.8
Nn1g06551 Nelumbo nucifera HOM05D003674 ORTHO05D004226 9.7e-49 196.8 125 78.4
ECA234G3736 Erigeron canadensis HOM05D003674 ORTHO05D004226 1.3e-48 196.4 125 77.6
Hma1.2p1_1937F.1_g308270 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 1.3e-48 196.4 125 78.4
Lsat_1_v5_gn_4_66721 Lactuca sativa HOM05D003674 ORTHO05D004226 1.3e-48 196.4 125 79.2
CSS0035927 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 1.7e-48 196.1 125 77.6
Glyma.12G204400 Glycine max HOM05D003674 ORTHO05D004226 1.7e-48 196.1 125 76.0
Thecc.02G180000 Theobroma cacao HOM05D003674 ORTHO05D004226 1.7e-48 196.1 125 75.2
MD17G1240200 Malus domestica HOM05D003674 ORTHO05D004226 2.2e-48 195.7 125 78.4
DCAR_021245 Daucus carota HOM05D003674 ORTHO05D004226 2.8e-48 195.3 125 78.4
Peaxi162Scf00132g00119 Petunia axillaris HOM05D003674 ORTHO05D004226 2.8e-48 195.3 125 77.6
RcHm_v2.0_Chr2g0126531 Rosa chinensis HOM05D003674 ORTHO05D004226 2.8e-48 195.3 125 78.4
Glyma.13G296900 Glycine max HOM05D003674 ORTHO05D004226 4.8e-48 194.5 125 76.0
AL6G49310 Arabidopsis lyrata HOM05D003674 ORTHO05D004226 8.2e-48 193.7 125 72.0
AUR62037356 Chenopodium quinoa HOM05D003674 ORTHO05D004226 1.1e-47 193.4 125 77.6
Ciclev10014388m.g Citrus clementina HOM05D003674 ORTHO05D004226 1.1e-47 193.4 125 78.4
Nitab4.5_0000512g0020 Nicotiana tabacum HOM05D003674 ORTHO05D004226 1.1e-47 193.4 125 77.6
Nitab4.5_0004344g0030 Nicotiana tabacum HOM05D003674 ORTHO05D004226 1.1e-47 193.4 125 77.6
CAN.G248.4 Capsicum annuum HOM05D003674 ORTHO05D004226 1.4e-47 193.0 125 76.0
Solyc07g053970.3 Solanum lycopersicum HOM05D003674 ORTHO05D004226 1.4e-47 193.0 125 76.0
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 1.4e-47 193.0 125 76.0
Lj3g0012901 Lotus japonicus HOM05D003674 ORTHO05D004226 1.8e-47 192.6 125 76.0
Phvul.004G108300 Phaseolus vulgaris HOM05D003674 ORTHO05D004226 1.8e-47 192.6 125 75.2
Rhsim06G0142000 Rhododendron simsii HOM05D003674 ORTHO05D004226 1.8e-47 192.6 125 75.2
CiPaw.03G177300 Carya illinoinensis HOM05D003674 ORTHO05D004226 2.4e-47 192.2 125 77.6
Haze_13165 Corylus avellana HOM05D003674 ORTHO05D004226 2.4e-47 192.2 125 76.8
Duzib132G0159 Durio zibethinus HOM05D003674 ORTHO05D004226 2.4e-47 192.2 125 73.6
TAR624G0523 Trochodendron aralioides HOM05D003674 ORTHO05D004226 2.4e-47 192.2 125 76.8
PGR142G3148 Punica granatum HOM05D003674 ORTHO05D004226 3.1e-47 191.8 125 76.8
TAR624G0345 Trochodendron aralioides HOM05D003674 ORTHO05D004226 3.1e-47 191.8 125 77.6
DCAR_019181 Daucus carota HOM05D003674 ORTHO05D004226 4.1e-47 191.4 125 74.4
FAN09G3196 Fragaria x ananassa HOM05D000230 ORTHO05D004226 4.1e-47 191.4 125 76.8
TPR.G6424 Trifolium pratense HOM05D003674 ORTHO05D004226 4.1e-47 191.4 125 74.4
Cfa014617 Carpinus fangiana HOM05D003674 ORTHO05D004226 5.3e-47 191.0 125 76.8
MD09G1247300 Malus domestica HOM05D003674 ORTHO05D004226 5.3e-47 191.0 125 74.4
Potri.013G131100 Populus trichocarpa HOM05D003674 ORTHO05D004226 5.3e-47 191.0 125 76.0
DCAR_013010 Daucus carota HOM05D003674 ORTHO05D004226 7.0e-47 190.7 125 74.4
QL08p038784 Quercus lobata HOM05D003674 ORTHO05D004226 7.0e-47 190.7 125 76.8
RcHm_v2.0_Chr2g0126551 Rosa chinensis HOM05D003674 ORTHO05D004226 7.0e-47 190.7 125 76.8
QL08p038913 Quercus lobata HOM05D003674 ORTHO05D004226 9.1e-47 190.3 125 75.2
VMungo0464G1662 Vigna mungo HOM05D003674 ORTHO05D004226 9.1e-47 190.3 125 76.0
Eucgr.K01030 Eucalyptus grandis HOM05D003674 ORTHO05D004226 1.2e-46 189.9 125 74.4
Lalb_Chr22g0356561 Lupinus albus HOM05D003674 ORTHO05D004226 1.2e-46 189.9 125 75.2
Actinidia11032 Actinidia chinensis HOM05D003674 ORTHO05D004226 1.6e-46 189.5 125 75.2
arahy.Tifrunner.gnm1.ann1.1DM7TY Arachis hypogaea HOM05D003674 ORTHO05D004226 2.0e-46 189.1 125 74.4
arahy.Tifrunner.gnm1.ann1.1TZ75T Arachis hypogaea HOM05D003674 ORTHO05D004226 2.0e-46 189.1 125 74.4
Eucgr.K01031 Eucalyptus grandis HOM05D003674 ORTHO05D004226 2.0e-46 189.1 125 75.2
FvH4_6g26210 Fragaria vesca HOM05D003674 ORTHO05D004226 2.0e-46 189.1 125 76.0
QL08p038841 Quercus lobata HOM05D003674 ORTHO05D004226 2.0e-46 189.1 125 75.2
Psat5g272320 Pisum sativum HOM05D003674 ORTHO05D004226 2.7e-46 188.7 125 73.6
Eucgr.K01029 Eucalyptus grandis HOM05D003674 ORTHO05D004226 3.5e-46 188.3 125 73.6
unitig_749.g13960 Utricularia gibba HOM05D003674 ORTHO05D004226 3.5e-46 188.3 125 74.4
CiPaw.04G126100 Carya illinoinensis HOM05D003674 ORTHO05D004226 4.5e-46 188.0 125 76.0
COL.COLO4_30194 Corchorus olitorius HOM05D003674 ORTHO05D004226 4.5e-46 188.0 125 72.0
FAN05G0320 Fragaria x ananassa HOM05D000230 ORTHO05D000176 7.7e-46 187.2 125 74.4
MBI06_g04180_MAGBIO Magnolia biondii HOM05D003674 ORTHO05D004226 2.9e-45 185.3 125 72.0
GSVIVG01020549001 Vitis vinifera HOM05D003674 ORTHO05D004226 3.8e-45 184.9 125 71.2
Os01g0678500 Oryza sativa ssp. japonica HOM05D003674 ORTHO05D004226 5.0e-45 184.5 125 72.0
Medtr2g090380 Medicago truncatula HOM05D003674 ORTHO05D004226 6.5e-45 184.1 125 72.8
Zm00001eb360320 Zea mays HOM05D003674 ORTHO05D004226 8.5e-45 183.7 125 72.0
HPP92_008135 Vanilla planifolia HOM05D003674 ORTHO05D004226 1.5e-44 183.0 125 68.8
PSO210G7128 Papaver somniferum HOM05D003674 ORTHO05D004226 3.2e-44 181.8 125 73.6
PSO832G0572 Papaver somniferum HOM05D003674 ORTHO05D004226 4.2e-44 181.4 125 73.6
Sabra13G0110800 Salix brachista HOM05D003674 ORTHO05D004226 1.2e-43 179.9 142 64.8
Aqoxy4G00814 Aquilegia oxysepala HOM05D003674 ORTHO05D004226 8.0e-43 177.2 125 70.4
DCAR_013011 Daucus carota HOM05D003674 ORTHO05D004226 1.0e-42 176.8 125 68.8
ATR0737G001 Amborella trichopoda HOM05D003674 ORTHO05D004226 8.8e-42 173.7 125 70.4
Manes.13G146400 Manihot esculenta HOM05D003674 ORTHO05D004226 2.2e-40 169.1 100 83.0
Peaxi162Scf00132g00117 Petunia axillaris HOM05D003674 ORTHO05D004226 1.1e-39 166.8 125 65.6
Oeu017491.1 Olea europaea HOM05D003674 ORTHO05D004226 5.4e-39 164.5 100 82.0
PSO675G3793 Papaver somniferum HOM05D003674 ORTHO05D004226 5.4e-39 164.5 125 64.0
Oeu058850.1 Olea europaea HOM05D003674 ORTHO05D004226 3.5e-38 161.8 91 86.8
Pp3c15_12230 Physcomitrium patens HOM05D003674 ORTHO05D004226 2.9e-37 158.7 124 62.1
Sabra13G0110700 Salix brachista HOM05D003674 ORTHO05D004226 1.5e-36 156.4 196 48.0
AagrBONN_evm.TU.Sc2ySwM_344.5080 Anthoceros agrestis HOM05D003674 ORTHO05D004226 4.2e-36 154.8 125 59.2
CAN.G1472.4 Capsicum annuum HOM05D003674 ORTHO05D004226 1.2e-35 153.3 125 59.2
Mapoly0002s0274 Marchantia polymorpha HOM05D003674 ORTHO05D004226 1.2e-35 153.3 125 59.2
Pp3c1_6270 Physcomitrium patens HOM05D003674 ORTHO05D004226 2.1e-35 152.5 125 61.6
Pp3c1_6272 Physcomitrium patens HOM05D003674 ORTHO05D004226 2.1e-35 152.5 125 61.6
Hma1.2p1_1836F.1_g304720 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 3.6e-35 151.8 96 79.2
Thhalv10029480m.g Eutrema salsugineum HOM05D003674 ORTHO05D004226 4.7e-35 151.4 125 63.2
Ca_01498_v3 Cicer arietinum L. HOM05D003674 ORTHO05D004226 2.3e-34 149.1 91 80.2
Hma1.2p1_1145F.1_g261410 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 2.8e-32 142.1 90 75.6
CDE06G1319 Ceratophyllum demersum HOM05D003674 ORTHO05D004226 9.5e-28 127.1 90 65.6
SHI10407 Sapria himalayana HOM05D003674 ORTHO05D004226 3.6e-27 125.2 84 71.4
Hund01095 Selenicereus undatus HOM05D003674 ORTHO05D004226 1.0e-26 123.6 84 72.6
CBR_g54426 Chara braunii HOM05D003674 ORTHO05D004226 2.3e-13 79.3 119 37.0
AUR62042592 Chenopodium quinoa HOM05D003674 ORTHO05D004226 2.5e-12 75.9 128 43.8
Pp3c1_28370 Physcomitrium patens HOM05D003674 ORTHO05D004226 5.6e-12 74.7 123 35.0
Pp3c14_20770 Physcomitrium patens HOM05D003674 ORTHO05D004226 7.3e-12 74.3 123 33.3
Pp3c3_16950 Physcomitrium patens HOM05D003674 ORTHO05D004226 3.6e-11 72.0 123 35.0
Pp3c2_10230 Physcomitrium patens HOM05D003674 ORTHO05D004226 4.7e-11 71.6 123 34.1
Pp3c18_10190 Physcomitrium patens HOM05D003674 ORTHO05D004226 5.2e-10 68.2 123 34.1
Pp3c19_18680 Physcomitrium patens HOM05D003674 ORTHO05D004226 5.2e-10 68.2 123 34.1
Pp3c21_11410 Physcomitrium patens HOM05D003674 ORTHO05D004226 2.0e-09 66.2 123 34.1
Mapoly0050s0061 Marchantia polymorpha HOM05D003674 ORTHO05D004226 7.5e-09 64.3 120 30.0
Hma1.2p1_1145F.1_g261420 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 1.1e-07 60.5 37 81.1
Mapoly0062s0036 Marchantia polymorpha HOM05D003674 ORTHO05D004226 5.4e-07 58.2 120 33.3
SHI10406 Sapria himalayana HOM05D003674 ORTHO05D004226 9.2e-07 57.4 36 77.8


User provided reference genes

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