Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.14337 Avicennia marina HOM05D003674 ORTHO05D004226 2.5e-50 201.8 105 100.0
MSTRG.14332 Avicennia marina HOM05D003674 ORTHO05D004226 1.2e-44 183.0 102 93.1
MSTRG.14342 Avicennia marina HOM05D003674 ORTHO05D004226 8.8e-35 150.2 97 78.4
Cc05_g07170 Coffea canephora HOM05D003674 ORTHO05D004226 3.7e-33 144.8 98 76.5
Haze_13165 Corylus avellana HOM05D003674 ORTHO05D004226 4.8e-33 144.4 102 69.6
SalBow1G3138 Salvia bowleyana HOM05D003674 ORTHO05D004226 4.8e-33 144.4 99 74.7
Actinidia11076 Actinidia chinensis HOM05D003674 ORTHO05D004226 6.3e-33 144.1 97 76.3
SGA_v2.0_scaffold322G48614 Striga asiatica HOM05D003674 ORTHO05D004226 6.3e-33 144.1 96 78.1
Gohir.A03G156500 Gossypium hirsutum HOM05D003674 ORTHO05D004226 2.4e-32 142.1 95 75.8
Gohir.D02G179566 Gossypium hirsutum HOM05D003674 ORTHO05D004226 2.4e-32 142.1 95 75.8
Gorai.005G201400 Gossypium raimondii HOM05D003674 ORTHO05D004226 2.4e-32 142.1 95 75.8
HPP92_008135 Vanilla planifolia HOM05D003674 ORTHO05D004226 3.1e-32 141.7 96 76.0
Eucgr.K01029 Eucalyptus grandis HOM05D003674 ORTHO05D004226 4.1e-32 141.4 94 76.6
arahy.Tifrunner.gnm1.ann1.1DM7TY Arachis hypogaea HOM05D003674 ORTHO05D004226 5.3e-32 141.0 102 70.6
Ciclev10014388m.g Citrus clementina HOM05D003674 ORTHO05D004226 5.3e-32 141.0 95 75.8
Hma1.2p1_2586F.1_g324940 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 5.3e-32 141.0 81 86.4
Dinv23635 Davidia involucrata HOM05D003674 ORTHO05D004226 7.0e-32 140.6 87 81.6
Sed0011332 Sechium edule HOM05D003674 ORTHO05D004226 1.2e-31 139.8 105 70.5
Duzib132G0159 Durio zibethinus HOM05D003674 ORTHO05D004226 1.6e-31 139.4 97 74.2
HanXRQChr10g0297111 Helianthus annuus HOM05D003674 ORTHO05D004226 1.6e-31 139.4 97 73.2
SalBow1G0286 Salvia bowleyana HOM05D003674 ORTHO05D004226 1.6e-31 139.4 94 75.5
CSS0035927 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 2.0e-31 139.0 102 69.6
CiPaw.03G177300 Carya illinoinensis HOM05D003674 ORTHO05D004226 2.0e-31 139.0 97 69.1
CiPaw.04G126200 Carya illinoinensis HOM05D003674 ORTHO05D004226 2.0e-31 139.0 96 75.0
CDE08G1051 Ceratophyllum demersum HOM05D003674 ORTHO05D004226 2.0e-31 139.0 97 75.3
COL.COLO4_30194 Corchorus olitorius HOM05D003674 ORTHO05D004226 2.0e-31 139.0 95 75.8
Thecc.02G180000 Theobroma cacao HOM05D003674 ORTHO05D004226 2.0e-31 139.0 97 74.2
arahy.Tifrunner.gnm1.ann1.1TZ75T Arachis hypogaea HOM05D003674 ORTHO05D004226 2.6e-31 138.7 97 72.2
Potri.013G131100 Populus trichocarpa HOM05D003674 ORTHO05D004226 2.6e-31 138.7 97 71.1
HanXRQChr06g0179591 Helianthus annuus HOM05D003674 ORTHO05D004226 3.5e-31 138.3 98 74.5
MD17G1240200 Malus domestica HOM05D003674 ORTHO05D004226 3.5e-31 138.3 103 70.9
FAN02G2237 Fragaria x ananassa HOM05D003674 ORTHO05D004226 4.5e-31 137.9 109 68.8
GSVIVG01020549001 Vitis vinifera HOM05D003674 ORTHO05D004226 7.7e-31 137.1 101 74.3
Nitab4.5_0000512g0020 Nicotiana tabacum HOM05D003674 ORTHO05D004226 1.0e-30 136.7 101 70.3
THA.LOC104801172 Tarenaya hassleriana HOM05D003674 ORTHO05D004226 1.0e-30 136.7 96 75.0
TWI75G1008 Tripterygium wilfordii HOM05D003674 ORTHO05D004226 1.0e-30 136.7 97 74.2
Aqoxy4G00814 Aquilegia oxysepala HOM05D003674 ORTHO05D004226 1.3e-30 136.3 101 72.3
Migut.H01178 Erythranthe guttata HOM05D003674 ORTHO05D004226 1.3e-30 136.3 102 71.6
THA.LOC104826033 Tarenaya hassleriana HOM05D003674 ORTHO05D004226 1.3e-30 136.3 96 74.0
TAR624G0345 Trochodendron aralioides HOM05D003674 ORTHO05D004226 1.3e-30 136.3 96 72.9
vmacro12305 Vaccinium macrocarpon HOM05D003674 ORTHO05D004226 1.3e-30 136.3 95 76.8
CSS0005418 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 1.7e-30 136.0 95 73.7
CSS0020583 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 1.7e-30 136.0 95 73.7
FvH4_6g26210 Fragaria vesca HOM05D003674 ORTHO05D004226 2.2e-30 135.6 90 80.0
Manes.13G146400 Manihot esculenta HOM05D003674 ORTHO05D004226 2.2e-30 135.6 84 78.6
QL08p038913 Quercus lobata HOM05D003674 ORTHO05D004226 2.2e-30 135.6 99 69.7
unitig_749.g13960 Utricularia gibba HOM05D003674 ORTHO05D004226 2.2e-30 135.6 106 69.8
AT4G03560 Arabidopsis thaliana HOM05D003674 ORTHO05D004226 2.9e-30 135.2 99 68.7
Nn1g06549 Nelumbo nucifera HOM05D003674 ORTHO05D004226 2.9e-30 135.2 88 77.3
RcHm_v2.0_Chr2g0126531 Rosa chinensis HOM05D003674 ORTHO05D004226 2.9e-30 135.2 89 77.5
BcaC01g06668 Brassica carinata HOM05D003674 ORTHO05D004226 3.8e-30 134.8 99 67.7
C03p36660 Brassica napus HOM05D003674 ORTHO05D004226 3.8e-30 134.8 99 67.7
BolC3t15980H Brassica oleracea HOM05D003674 ORTHO05D004226 3.8e-30 134.8 99 67.7
Actinidia11032 Actinidia chinensis HOM05D003674 ORTHO05D004226 5.0e-30 134.4 95 72.6
BcaB01g01906 Brassica carinata HOM05D003674 ORTHO05D004226 5.0e-30 134.4 104 67.3
BcaC04g23961 Brassica carinata HOM05D003674 ORTHO05D004226 5.0e-30 134.4 104 67.3
A09p02830 Brassica napus HOM05D000230 ORTHO05D000176 5.0e-30 134.4 104 67.3
BolC9t53217H Brassica oleracea HOM05D003674 ORTHO05D004226 5.0e-30 134.4 104 67.3
BraA09t35927Z Brassica rapa HOM05D003674 ORTHO05D004226 5.0e-30 134.4 104 67.3
Carub.0006s3351 Capsella rubella HOM05D003674 ORTHO05D004226 5.0e-30 134.4 104 67.3
Cfa014617 Carpinus fangiana HOM05D003674 ORTHO05D004226 5.0e-30 134.4 97 69.1
Lalb_Chr22g0356561 Lupinus albus HOM05D003674 ORTHO05D004226 5.0e-30 134.4 97 69.1
AL6G49310 Arabidopsis lyrata HOM05D003674 ORTHO05D004226 6.5e-30 134.0 84 78.6
CARHR251990 Cardamine hirsuta HOM05D003674 ORTHO05D004226 6.5e-30 134.0 112 63.4
Lsat_1_v5_gn_4_66721 Lactuca sativa HOM05D003674 ORTHO05D004226 6.5e-30 134.0 96 74.0
Oeu017491.1 Olea europaea HOM05D003674 ORTHO05D004226 6.5e-30 134.0 105 70.5
Prupe.3G138600 Prunus persica HOM05D003674 ORTHO05D004226 6.5e-30 134.0 96 71.9
A03p30360 Brassica napus HOM05D003674 ORTHO05D004226 8.5e-30 133.7 92 71.7
BraA03t12218Z Brassica rapa HOM05D003674 ORTHO05D004226 8.5e-30 133.7 92 71.7
QL08p038841 Quercus lobata HOM05D003674 ORTHO05D004226 8.5e-30 133.7 96 71.9
BcaB01g02542 Brassica carinata HOM05D003674 ORTHO05D004226 1.1e-29 133.3 104 67.3
QL08p038784 Quercus lobata HOM05D003674 ORTHO05D004226 1.1e-29 133.3 96 72.9
Aa31LG5G2940 Aethionema arabicum HOM05D003674 ORTHO05D004226 1.5e-29 132.9 92 71.7
MELO3C018734.2 Cucumis melo HOM05D003674 ORTHO05D004226 1.9e-29 132.5 99 70.7
ATR0737G184 Amborella trichopoda HOM05D003674 ORTHO05D004226 2.5e-29 132.1 98 70.4
DCAR_013010 Daucus carota HOM05D003674 ORTHO05D004226 2.5e-29 132.1 98 69.4
ECA234G3736 Erigeron canadensis HOM05D003674 ORTHO05D004226 3.2e-29 131.7 94 72.3
Eucgr.K01031 Eucalyptus grandis HOM05D003674 ORTHO05D004226 3.2e-29 131.7 97 71.1
Solyc07g053970.3 Solanum lycopersicum HOM05D003674 ORTHO05D004226 3.2e-29 131.7 105 65.7
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 3.2e-29 131.7 105 65.7
Eucgr.K01030 Eucalyptus grandis HOM05D003674 ORTHO05D004226 4.2e-29 131.3 81 81.5
Thhalv10029480m.g Eutrema salsugineum HOM05D003674 ORTHO05D004226 5.5e-29 131.0 112 60.7
Sp6g03570 Schrenkiella parvula HOM05D003674 ORTHO05D004226 7.2e-29 130.6 82 76.8
TAR624G0173 Trochodendron aralioides HOM05D003674 ORTHO05D004226 7.2e-29 130.6 96 67.7
PSO210G7128 Papaver somniferum HOM05D003674 ORTHO05D004226 9.4e-29 130.2 91 72.5
Peaxi162Scf00132g00119 Petunia axillaris HOM05D003674 ORTHO05D004226 9.4e-29 130.2 94 69.1
CsaV3_7G004450 Cucumis sativus L. HOM05D003674 ORTHO05D004226 1.2e-28 129.8 104 67.3
PGR142G3148 Punica granatum HOM05D003674 ORTHO05D004226 1.2e-28 129.8 97 69.1
DCAR_019181 Daucus carota HOM05D003674 ORTHO05D004226 1.6e-28 129.4 96 69.8
PSO832G0572 Papaver somniferum HOM05D003674 ORTHO05D004226 1.6e-28 129.4 97 71.1
MD09G1247300 Malus domestica HOM05D003674 ORTHO05D004226 2.1e-28 129.0 109 62.4
Sc12g0003090 Simmondsia chinensis HOM05D003674 ORTHO05D004226 2.1e-28 129.0 81 81.5
RcHm_v2.0_Chr2g0126551 Rosa chinensis HOM05D003674 ORTHO05D004226 2.7e-28 128.6 105 66.7
Zm00001eb360320 Zea mays HOM05D003674 ORTHO05D004226 3.6e-28 128.3 75 84.0
TPR.G6424 Trifolium pratense HOM05D003674 ORTHO05D004226 6.1e-28 127.5 96 68.8
CAN.G248.4 Capsicum annuum HOM05D003674 ORTHO05D004226 1.8e-27 125.9 96 67.7
Medtr2g090380 Medicago truncatula HOM05D003674 ORTHO05D004226 1.8e-27 125.9 97 70.1
Os01g0678500 Oryza sativa ssp. japonica HOM05D003674 ORTHO05D004226 4.0e-27 124.8 96 66.7
DCAR_021245 Daucus carota HOM05D003674 ORTHO05D004226 6.7e-27 124.0 104 62.5
Glyma.12G204400 Glycine max HOM05D003674 ORTHO05D004226 1.1e-26 123.2 103 62.1
Glyma.13G296900 Glycine max HOM05D003674 ORTHO05D004226 1.1e-26 123.2 102 64.7
Lj3g0012901 Lotus japonicus HOM05D003674 ORTHO05D004226 1.1e-26 123.2 96 67.7
Psat5g272320 Pisum sativum HOM05D003674 ORTHO05D004226 1.1e-26 123.2 84 73.8
DCAR_013011 Daucus carota HOM05D003674 ORTHO05D004226 3.3e-26 121.7 85 69.4
Phvul.004G108300 Phaseolus vulgaris HOM05D003674 ORTHO05D004226 9.7e-26 120.2 102 63.7
VMungo0464G1662 Vigna mungo HOM05D003674 ORTHO05D004226 1.7e-25 119.4 90 66.7
EL10Ac9g20767 Beta vulgaris HOM05D003674 ORTHO05D004226 2.2e-25 119.0 73 75.3
PSO675G3793 Papaver somniferum HOM05D003674 ORTHO05D004226 3.7e-25 118.2 96 66.7
Oeu017490.2 Olea europaea HOM05D003674 ORTHO05D004226 6.3e-25 117.5 65 86.2
Oeu030714.1 Olea europaea HOM05D003674 ORTHO05D004226 5.3e-24 114.4 84 70.2
CAN.G1472.4 Capsicum annuum HOM05D003674 ORTHO05D004226 1.0e-22 110.2 103 60.2
Peaxi162Scf00132g00117 Petunia axillaris HOM05D003674 ORTHO05D004226 7.2e-21 104.0 65 81.5
Pp3c1_6270 Physcomitrium patens HOM05D003674 ORTHO05D004226 1.6e-20 102.8 102 53.9
Pp3c1_6272 Physcomitrium patens HOM05D003674 ORTHO05D004226 1.6e-20 102.8 102 53.9
Mapoly0002s0274 Marchantia polymorpha HOM05D003674 ORTHO05D004226 2.1e-20 102.4 102 52.9
Pp3c15_12230 Physcomitrium patens HOM05D003674 ORTHO05D004226 4.0e-19 98.2 81 55.6
Hund01095 Selenicereus undatus HOM05D003674 ORTHO05D004226 2.4e-16 89.0 50 78.0
AagrBONN_evm.TU.Sc2ySwM_344.5080 Anthoceros agrestis HOM05D003674 ORTHO05D004226 5.4e-16 87.8 104 48.1
FAN05G0320 Fragaria x ananassa HOM05D000230 ORTHO05D000176 1.2e-12 76.6 62 71.0
Pp3c18_10190 Physcomitrium patens HOM05D003674 ORTHO05D004226 2.1e-12 75.9 73 52.1
Ah.01g004260 Amaranthus hybridus HOM05D003674 ORTHO05D004226 1.0e-11 73.6 61 59.0
Pp3c21_11410 Physcomitrium patens HOM05D003674 ORTHO05D004226 6.8e-11 70.9 73 50.7
Nitab4.5_0004344g0030 Nicotiana tabacum HOM05D003674 ORTHO05D004226 1.2e-10 70.1 74 58.1
AUR62037356 Chenopodium quinoa HOM05D003674 ORTHO05D004226 3.4e-10 68.6 103 42.7
AUR62042592 Chenopodium quinoa HOM05D003674 ORTHO05D004226 3.4e-10 68.6 103 42.7
Oeu058850.1 Olea europaea HOM05D003674 ORTHO05D004226 1.7e-09 66.2 30 93.3
SHI10399 Sapria himalayana HOM05D003674 ORTHO05D004226 2.2e-09 65.9 66 53.0
Pp3c1_28370 Physcomitrium patens HOM05D003674 ORTHO05D004226 2.8e-09 65.5 91 41.8
SEGI_38669 Sequoiadendron giganteum HOM05D003674 ORTHO05D004226 6.3e-09 64.3 49 67.3
Mapoly0062s0036 Marchantia polymorpha HOM05D003674 ORTHO05D004226 1.1e-08 63.5 83 38.6
Pp3c2_10230 Physcomitrium patens HOM05D003674 ORTHO05D004226 1.1e-08 63.5 75 44.0
SEGI_23599 Sequoiadendron giganteum HOM05D003674 ORTHO05D004226 1.1e-08 63.5 36 72.2
Pp3c14_20770 Physcomitrium patens HOM05D003674 ORTHO05D004226 1.4e-08 63.2 96 38.5
Mapoly0050s0061 Marchantia polymorpha HOM05D003674 ORTHO05D004226 2.4e-08 62.4 71 45.1
Nitab4.5_0000638g0280 Nicotiana tabacum HOM05D003674 ORTHO05D004226 7.7e-07 57.4 35 77.1
Nitab4.5_0012835g0030 Nicotiana tabacum HOM05D003674 ORTHO05D004226 1.7e-06 56.2 35 74.3


User provided reference genes

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