Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.14187 Avicennia marina HOM05D004586 ORTHO05D005266 0.0e+00 1369.8 745 100.0
SalBow1G4799 Salvia bowleyana HOM05D004586 ORTHO05D005266 6.9e-142 508.8 742 50.5
SalBow7G1236 Salvia bowleyana HOM05D004586 ORTHO05D005266 1.3e-140 504.6 742 50.7
SGA_v2.0_scaffold159G37633 Striga asiatica HOM05D004586 ORTHO05D005266 1.6e-122 444.5 751 46.6
Oeu025511.1 Olea europaea HOM05D004586 ORTHO05D005266 2.6e-117 427.2 671 47.2
SGA_v2.0_scaffold49G18309 Striga asiatica HOM05D004586 ORTHO05D005266 1.1e-112 411.8 680 43.1
Actinidia09891 Actinidia chinensis HOM05D004586 ORTHO05D005266 3.7e-111 406.8 762 43.6
CSS0039758 Camellia sinensis var. sinensis HOM05D004586 ORTHO05D005266 2.9e-108 397.1 727 44.3
PGSC0003DMG400018364 Solanum tuberosum HOM05D004586 ORTHO05D005266 1.5e-107 394.8 737 43.7
Actinidia12449 Actinidia chinensis HOM05D004586 ORTHO05D005266 2.7e-106 390.6 801 41.9
Migut.H01030 Erythranthe guttata HOM05D004586 ORTHO05D005266 2.6e-104 384.0 756 43.4
Nitab4.5_0009520g0030 Nicotiana tabacum HOM05D004586 ORTHO05D005266 7.5e-104 382.5 738 41.5
Sopen07g028400 Solanum pennellii HOM05D004586 ORTHO05D005266 7.5e-104 382.5 439 52.6
Solyc07g054460.4 Solanum lycopersicum HOM05D004586 ORTHO05D005266 2.4e-102 377.5 738 42.1
Peaxi162Scf00007g02845 Petunia axillaris HOM05D004586 ORTHO05D005266 2.0e-101 374.4 434 51.2
Nitab4.5_0003018g0070 Nicotiana tabacum HOM05D004586 ORTHO05D005266 3.5e-101 373.6 768 40.5
vmacro12267 Vaccinium macrocarpon HOM05D004586 ORTHO05D005266 1.1e-99 368.6 651 43.9
Lj1C734T7 Lonicera japonica HOM05D004586 ORTHO05D005266 1.8e-97 361.3 847 40.4
Cc00_g21120 Coffea canephora HOM05D004586 ORTHO05D005266 2.0e-96 357.8 751 43.5
unitig_26.g9937 Utricularia gibba HOM05D004586 ORTHO05D005266 3.7e-95 353.6 681 42.0
Rhsim06G0149700 Rhododendron simsii HOM05D004586 ORTHO05D005266 4.8e-95 353.2 843 39.5
Sabra13G0117000 Salix brachista HOM05D004586 ORTHO05D005266 5.4e-94 349.7 780 40.6
Hma1.2p1_0875F.1_g231553 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 9.1e-94 349.0 755 40.8
Hma1.2p1_0875F.1_g231580 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 9.1e-94 349.0 755 40.8
TWI36G0730 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 7.7e-93 345.9 471 47.3
Potri.013G145300 Populus trichocarpa HOM05D004586 ORTHO05D005266 5.0e-92 343.2 794 39.3
CAN.G78.83 Capsicum annuum HOM05D004586 ORTHO05D005266 6.6e-92 342.8 433 49.2
Peaxi162Scf00485g00032 Petunia axillaris HOM05D004586 ORTHO05D005266 4.2e-91 340.1 777 38.1
GSVIVG01030569001 Vitis vinifera HOM05D004586 ORTHO05D005266 3.6e-90 337.0 441 48.3
TAR627G0949 Trochodendron aralioides HOM05D004586 ORTHO05D005266 8.0e-90 335.9 726 41.7
QL10p048480 Quercus lobata HOM05D004586 ORTHO05D005266 1.0e-89 335.5 428 48.4
Manes.12G079600 Manihot esculenta HOM05D004586 ORTHO05D005266 2.6e-88 330.9 453 47.7
CANSAT64G2104 Cannabis sativa HOM05D004586 ORTHO05D005266 3.4e-88 330.5 742 39.4
Haze_13103 Corylus avellana HOM05D004586 ORTHO05D005266 7.5e-88 329.3 775 38.7
MD17G1081900 Malus domestica HOM05D004586 ORTHO05D005266 2.8e-87 327.4 411 46.7
CAN.G996.7 Capsicum annuum HOM05D004586 ORTHO05D005266 4.9e-87 326.6 435 47.8
Eucgr.B03848 Eucalyptus grandis HOM05D004586 ORTHO05D005266 9.2e-86 322.4 760 37.5
Atru.chr6.3049 Acer truncatum HOM05D004586 ORTHO05D005266 7.8e-85 319.3 670 40.7
CiPaw.03G171000 Carya illinoinensis HOM05D004586 ORTHO05D005266 1.7e-84 318.2 417 47.7
MD09G1092000 Malus domestica HOM05D004586 ORTHO05D005266 3.8e-84 317.0 708 38.8
TWI18G0514 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 6.6e-84 316.2 444 44.8
Ciclev10014470m.g Citrus clementina HOM05D004586 ORTHO05D005266 8.6e-84 315.8 771 39.7
RcHm_v2.0_Chr2g0162091 Rosa chinensis HOM05D004586 ORTHO05D005266 2.5e-83 314.3 401 46.4
COL.COLO4_13701 Corchorus olitorius HOM05D004586 ORTHO05D005266 5.6e-83 313.2 710 37.6
Duzib106G1111 Durio zibethinus HOM05D004586 ORTHO05D005266 1.2e-82 312.0 420 45.7
Prupe.3G233000 Prunus persica HOM05D004586 ORTHO05D005266 2.1e-82 311.2 706 38.2
Potri.019G104400 Populus trichocarpa HOM05D004586 ORTHO05D005266 8.0e-82 309.3 766 38.0
Cfa014556 Carpinus fangiana HOM05D004586 ORTHO05D005266 2.3e-81 307.8 443 44.9
HanXRQChr05g0140481 Helianthus annuus HOM05D004586 ORTHO05D005266 2.3e-81 307.8 450 46.2
Duzib052G0504 Durio zibethinus HOM05D004586 ORTHO05D005266 1.2e-80 305.4 775 35.2
HanXRQChr14g0441421 Helianthus annuus HOM05D004586 ORTHO05D005266 2.6e-80 304.3 447 45.4
Lj3g0023901 Lotus japonicus HOM05D004586 ORTHO05D005266 1.7e-79 301.6 471 42.7
FAN09G2343 Fragaria x ananassa HOM05D004586 ORTHO05D005266 3.7e-79 300.4 412 46.6
Gohir.D13G149100 Gossypium hirsutum HOM05D004586 ORTHO05D005266 3.7e-79 300.4 435 45.5
Thecc.02G173500 Theobroma cacao HOM05D004586 ORTHO05D005266 4.9e-79 300.1 767 33.6
AUR62035735 Chenopodium quinoa HOM05D004586 ORTHO05D005266 1.4e-78 298.5 797 36.3
TAR629G0893 Trochodendron aralioides HOM05D004586 ORTHO05D005266 7.0e-78 296.2 464 43.5
Cpa.g.sc34.112 Carica papaya HOM05D004586 ORTHO05D005266 7.8e-77 292.7 444 45.9
Gohir.A13G144300 Gossypium hirsutum HOM05D004586 ORTHO05D005266 7.8e-77 292.7 436 45.4
Gorai.013G166800 Gossypium raimondii HOM05D004586 ORTHO05D005266 7.8e-77 292.7 443 45.4
FAN02G1766 Fragaria x ananassa HOM05D004586 ORTHO05D005266 1.7e-76 291.6 398 45.5
FvH4_6g44910 Fragaria vesca HOM05D004586 ORTHO05D005266 5.0e-76 290.0 401 45.6
PGR042G3101 Punica granatum HOM05D004586 ORTHO05D005266 8.6e-76 289.3 436 43.8
FAN14G4866 Fragaria x ananassa HOM05D004586 ORTHO05D005266 1.1e-75 288.9 366 47.5
Phvul.011G112400 Phaseolus vulgaris HOM05D004586 ORTHO05D005266 1.5e-75 288.5 403 46.4
MBI02_g10548_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 4.3e-75 287.0 789 37.4
Sc12g0002770 Simmondsia chinensis HOM05D004586 ORTHO05D005266 5.6e-75 286.6 262 60.7
arahy.Tifrunner.gnm1.ann1.FC6AAX Arachis hypogaea HOM05D004586 ORTHO05D005266 1.6e-74 285.0 443 44.7
COL.COLO4_08510 Corchorus olitorius HOM05D004586 ORTHO05D005266 3.6e-74 283.9 374 46.5
VMungo1127G2109 Vigna mungo HOM05D004586 ORTHO05D005266 3.6e-74 283.9 427 45.4
Lsat_1_v5_gn_4_68860 Lactuca sativa HOM05D004586 ORTHO05D005266 8.0e-74 282.7 417 45.6
ECA234G1777 Erigeron canadensis HOM05D004586 ORTHO05D005266 1.8e-73 281.6 442 42.1
FAN05G3704 Fragaria x ananassa HOM05D004586 ORTHO05D005266 4.0e-73 280.4 674 34.7
Hund09647 Selenicereus undatus HOM05D004586 ORTHO05D005266 2.6e-72 277.7 423 44.0
EL10As5g23555 Beta vulgaris HOM05D004586 ORTHO05D005266 3.4e-72 277.3 817 36.5
Dinv15471 Davidia involucrata HOM05D004586 ORTHO05D005266 9.8e-72 275.8 374 46.0
AUR62000198 Chenopodium quinoa HOM05D004586 ORTHO05D005266 8.3e-71 272.7 743 37.3
Medtr0072s0050 Medicago truncatula HOM05D004586 ORTHO05D005266 8.3e-71 272.7 433 44.8
arahy.Tifrunner.gnm1.ann1.SANC69 Arachis hypogaea HOM05D004586 ORTHO05D005266 3.2e-70 270.8 447 42.5
THA.LOC104826023 Tarenaya hassleriana HOM05D004586 ORTHO05D005266 1.2e-69 268.9 807 33.7
PSO675G0516 Papaver somniferum HOM05D004586 ORTHO05D005266 7.8e-69 266.2 269 56.5
Psat0s4261g0040 Pisum sativum HOM05D004586 ORTHO05D005266 1.0e-68 265.8 350 46.3
TPR.G21660 Trifolium pratense HOM05D004586 ORTHO05D005266 1.7e-68 265.0 202 64.4
AT1G03530 Arabidopsis thaliana HOM05D004586 ORTHO05D005266 2.3e-68 264.6 377 45.1
PSO541G0834 Papaver somniferum HOM05D004586 ORTHO05D005266 2.3e-68 264.6 269 55.8
BcaB02g06919 Brassica carinata HOM05D004586 ORTHO05D005266 1.5e-67 261.9 375 44.8
Carub.0001s0267 Capsella rubella HOM05D004586 ORTHO05D005266 1.9e-67 261.5 370 43.2
Lalb_Chr01g0005391 Lupinus albus HOM05D004586 ORTHO05D005266 1.9e-67 261.5 439 43.3
Sp1g02460 Schrenkiella parvula HOM05D004586 ORTHO05D005266 1.9e-67 261.5 415 41.7
Sed0007770 Sechium edule HOM05D004586 ORTHO05D005266 1.9e-67 261.5 503 39.2
AL1G13040 Arabidopsis lyrata HOM05D004586 ORTHO05D005266 2.5e-67 261.2 417 42.4
Thhalv10006867m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 2.5e-67 261.2 433 40.6
Ca_27565_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 4.7e-66 256.9 340 46.5
Ca_20687_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 8.1e-66 256.1 428 42.1
MELO3C003861.2 Cucumis melo HOM05D004586 ORTHO05D005266 5.2e-65 253.4 501 37.5
CARHR002890 Cardamine hirsuta HOM05D004586 ORTHO05D005266 4.4e-64 250.4 379 42.7
Glyma.06G297000 Glycine max HOM05D004586 ORTHO05D005266 4.4e-64 250.4 437 41.0
CsaV3_2G036510 Cucumis sativus L. HOM05D004586 ORTHO05D005266 7.5e-64 249.6 507 38.3
BraA10t42477Z Brassica rapa HOM05D000330 ORTHO05D000209 1.3e-63 248.8 426 40.1
A10p02080 Brassica napus HOM05D000330 ORTHO05D005266 2.2e-63 248.1 443 39.1
C05p01990 Brassica napus HOM05D004586 ORTHO05D005266 2.9e-63 247.7 418 42.3
MELO3C021880.2 Cucumis melo HOM05D004586 ORTHO05D005266 4.9e-63 246.9 452 38.7
PSO384G2677 Papaver somniferum HOM05D004586 ORTHO05D005266 8.3e-63 246.1 385 41.6
ClCG02G017410 Citrullus lanatus HOM05D004586 ORTHO05D005266 4.1e-62 243.8 478 40.0
Glyma.12G108100 Glycine max HOM05D004586 ORTHO05D005266 4.1e-62 243.8 438 40.6
BcaC05g24523 Brassica carinata HOM05D004586 ORTHO05D005266 7.1e-62 243.0 419 41.8
BolC5t28977H Brassica oleracea HOM05D004586 ORTHO05D005266 7.1e-62 243.0 419 41.8
SHI10466 Sapria himalayana HOM05D004586 ORTHO05D005266 9.2e-62 242.7 455 38.2
Ah.01g003940 Amaranthus hybridus HOM05D004586 ORTHO05D005266 2.7e-61 241.1 420 42.1
C08p00660 Brassica napus HOM05D004586 ORTHO05D005266 4.6e-61 240.4 431 40.4
DCAR_019194 Daucus carota HOM05D004586 ORTHO05D005266 6.0e-61 240.0 818 31.5
HPP92_014062 Vanilla planifolia HOM05D004586 ORTHO05D005266 6.0e-61 240.0 406 40.9
A08p37340 Brassica napus HOM05D004586 ORTHO05D005266 1.7e-60 238.4 385 40.0
Os05g0502800 Oryza sativa ssp. japonica HOM05D004586 ORTHO05D005266 1.9e-59 235.0 445 38.0
Nn1g03938 Nelumbo nucifera HOM05D004586 ORTHO05D005266 9.5e-59 232.6 191 62.3
BraA08t35631Z Brassica rapa HOM05D004586 ORTHO05D005266 1.6e-58 231.9 381 38.8
Nitab4.5_0007732g0010 Nicotiana tabacum HOM05D004586 ORTHO05D005266 2.6e-56 224.6 193 62.2
Zm00001eb292050 Zea mays HOM05D004586 ORTHO05D005266 4.4e-56 223.8 205 58.5
CDE02G0135 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 7.6e-56 223.0 208 55.3
Lj3g0000702 Lotus japonicus HOM05D004586 ORTHO05D005266 1.3e-55 222.2 372 41.9
ATR0693G407 Amborella trichopoda HOM05D004586 ORTHO05D005266 1.7e-55 221.9 454 39.0
Psat5g270160 Pisum sativum HOM05D004586 ORTHO05D005266 2.9e-55 221.1 361 39.6
Aa31LG1G20890 Aethionema arabicum HOM05D004586 ORTHO05D005266 2.4e-54 218.0 423 38.3
Medtr2g090095 Medicago truncatula HOM05D004586 ORTHO05D005266 3.9e-52 210.7 233 51.1
arahy.Tifrunner.gnm1.ann1.IS01QF Arachis hypogaea HOM05D004586 ORTHO05D005266 5.6e-51 206.8 245 50.6
BolC8t46864H Brassica oleracea HOM05D004586 ORTHO05D005266 5.6e-51 206.8 208 49.5
SEGI_15076 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 1.4e-49 202.2 320 39.7
arahy.Tifrunner.gnm1.ann1.7D4Z5S Arachis hypogaea HOM05D004586 ORTHO05D005266 5.3e-49 200.3 245 49.8
Thhalv10024822m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 5.3e-49 200.3 392 37.5
TPR.G27075 Trifolium pratense HOM05D004586 ORTHO05D005266 8.4e-47 193.0 393 37.2
Lalb_Chr22g0356411 Lupinus albus HOM05D004586 ORTHO05D005266 3.3e-43 181.0 231 47.2
CDE02G4059 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 9.6e-43 179.5 317 38.8
SMO137G0274 Selaginella moellendorffii HOM05D004586 ORTHO05D005266 1.7e-39 168.7 153 51.6
MBI02_g27225_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 2.9e-39 167.9 436 32.8
AagrBONN_evm.TU.Sc2ySwM_117.2920 Anthoceros agrestis HOM05D004586 ORTHO05D005266 6.4e-39 166.8 336 36.3
CBR_g12767 Chara braunii HOM05D004586 ORTHO05D005266 6.4e-39 166.8 236 42.4
SEGI_36208 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 1.1e-35 156.0 232 41.4
Mapoly0108s0039 Marchantia polymorpha HOM05D004586 ORTHO05D005266 3.1e-33 147.9 187 43.9
Pp3c14_14050 Physcomitrium patens HOM05D004586 ORTHO05D005266 4.0e-33 147.5 174 44.3
Pp3c10_10230 Physcomitrium patens HOM05D004586 ORTHO05D005266 3.4e-32 144.4 136 52.2
Psat0s10217g0080 Pisum sativum HOM05D004586 ORTHO05D005266 2.8e-26 124.8 96 67.7
BcaB08g36102 Brassica carinata HOM05D004586 ORTHO05D005266 4.0e-25 120.9 122 51.6
BcaB01g00913 Brassica carinata HOM05D004586 ORTHO05D005266 4.5e-24 117.5 122 50.8
DCAR_012988 Daucus carota HOM05D004586 ORTHO05D005266 7.4e-19 100.1 305 35.1
PSO339G0898 Papaver somniferum HOM05D004586 ORTHO05D005266 2.6e-16 91.7 88 56.8
Medtr7g116780 Medicago truncatula HOM05D004586 ORTHO05D005266 5.9e-16 90.5 71 62.0
MCO05G032 Micromonas commoda HOM05D004586 ORTHO05D005266 5.1e-12 77.4 211 27.5
Cre10.g467100 Chlamydomonas reinhardtii HOM05D004586 ORTHO05D005266 1.7e-10 72.4 113 34.5
AL2G23840 Arabidopsis lyrata HOM05D020923 ORTHO05D021440 8.2e-10 70.1 92 42.4
Dinv01388 Davidia involucrata HOM05D033017 ORTHO05D005266 3.2e-06 58.2 184 31.0


User provided reference genes

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