Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.14095 Avicennia marina HOM05D003921 ORTHO05D004394 3.2e-79 298.5 168 100.0
Dinv22928 Davidia involucrata HOM05D003921 ORTHO05D004394 3.3e-52 208.8 170 70.0
Migut.J00413 Erythranthe guttata HOM05D003921 ORTHO05D004394 3.7e-51 205.3 169 69.2
Hma1.2p1_0654F.1_g196410 Hydrangea macrophylla HOM05D003921 ORTHO05D004394 1.5e-49 199.9 168 66.1
Potri.015G131200 Populus trichocarpa HOM05D003921 ORTHO05D004394 1.5e-49 199.9 168 67.9
Dinv22984 Davidia involucrata HOM05D003921 ORTHO05D004394 2.6e-49 199.1 170 67.1
Haze_17961 Corylus avellana HOM05D003921 ORTHO05D004394 3.2e-47 192.2 168 66.7
Cfa018157 Carpinus fangiana HOM05D003921 ORTHO05D004394 1.2e-46 190.3 168 66.1
Hund09280 Selenicereus undatus HOM05D003921 ORTHO05D004394 1.4e-45 186.8 168 65.5
Hund09282 Selenicereus undatus HOM05D003921 ORTHO05D004394 1.4e-45 186.8 168 65.5
MBI05_g15474_MAGBIO Magnolia biondii HOM05D003921 ORTHO05D004394 2.3e-45 186.0 169 62.7
Gohir.A07G039500 Gossypium hirsutum HOM05D003921 ORTHO05D004394 3.0e-45 185.7 168 70.8
Cpa.g.sc3.273 Carica papaya HOM05D003921 ORTHO05D004394 1.5e-44 183.3 168 63.7
Thecc.03G161300 Theobroma cacao HOM05D003921 ORTHO05D004394 1.5e-44 183.3 168 68.5
Peaxi162Scf00441g00013 Petunia axillaris HOM05D003921 ORTHO05D004394 3.3e-44 182.2 168 68.5
PGSC0003DMG400032141 Solanum tuberosum HOM05D003921 ORTHO05D004394 4.4e-44 181.8 160 65.6
Gohir.D07G043600 Gossypium hirsutum HOM05D003921 ORTHO05D004394 5.7e-44 181.4 168 70.2
Gorai.001G046600 Gossypium raimondii HOM05D003921 ORTHO05D004394 5.7e-44 181.4 168 70.2
vmacro18851 Vaccinium macrocarpon HOM05D003921 ORTHO05D004394 7.4e-44 181.0 171 60.8
Solyc01g006170.4 Solanum lycopersicum HOM05D003921 ORTHO05D004394 9.7e-44 180.6 160 66.9
Sopen01g002180 Solanum pennellii HOM05D003921 ORTHO05D004394 9.7e-44 180.6 160 66.9
MSTRG.5717 Avicennia marina HOM05D003921 ORTHO05D004394 4.8e-43 178.3 174 66.7
Eucgr.E01709 Eucalyptus grandis HOM05D003921 ORTHO05D004394 6.3e-43 177.9 168 64.9
PGSC0003DMG400032192 Solanum tuberosum HOM05D003921 ORTHO05D004394 8.2e-43 177.6 160 65.6
Manes.06G137800 Manihot esculenta HOM05D003921 ORTHO05D004394 2.4e-42 176.0 169 65.7
SGA_v2.0_scaffold126G33894 Striga asiatica HOM05D003921 ORTHO05D004394 2.4e-42 176.0 169 66.3
Rhsim11G0028700 Rhododendron simsii HOM05D003921 ORTHO05D004394 5.3e-42 174.9 171 60.2
Lalb_Chr10g0096111 Lupinus albus HOM05D003921 ORTHO05D004394 7.0e-42 174.5 166 62.7
Sopen01g002090 Solanum pennellii HOM05D003921 ORTHO05D004394 1.6e-41 173.3 163 63.8
Rhsim11G0028600 Rhododendron simsii HOM05D003921 ORTHO05D004394 2.0e-41 172.9 171 60.2
TAR636G2246 Trochodendron aralioides HOM05D003921 ORTHO05D004394 4.5e-41 171.8 168 63.1
Solyc01g006090.3 Solanum lycopersicum HOM05D003921 ORTHO05D004394 1.0e-40 170.6 163 63.2
Rhsim07G0193400 Rhododendron simsii HOM05D003921 ORTHO05D004394 1.7e-40 169.9 156 63.5
TWI14G0513 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 2.2e-40 169.5 168 60.7
MELO3C005417.2 Cucumis melo HOM05D003921 ORTHO05D004394 2.9e-40 169.1 169 64.5
QL02p008779 Quercus lobata HOM05D003921 ORTHO05D004394 5.0e-40 168.3 168 61.3
TWI23G0331 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 1.1e-39 167.2 168 59.5
CDE07G0272 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 7.2e-39 164.5 167 57.5
CsaV3_5G005400 Cucumis sativus L. HOM05D003921 ORTHO05D004394 7.2e-39 164.5 173 62.4
Sc03g0002240 Simmondsia chinensis HOM05D003921 ORTHO05D004394 1.4e-37 160.2 167 61.7
arahy.Tifrunner.gnm1.ann1.HSUB65 Arachis hypogaea HOM05D003921 ORTHO05D004394 4.0e-37 158.7 169 57.4
Lj1P984T37 Lonicera japonica HOM05D003921 ORTHO05D004394 5.2e-37 158.3 168 61.9
Ciclev10005521m.g Citrus clementina HOM05D003921 ORTHO05D004394 1.5e-36 156.8 170 61.8
DCAR_020219 Daucus carota HOM05D003921 ORTHO05D004394 2.6e-36 156.0 170 57.6
RcHm_v2.0_Chr1g0375101 Rosa chinensis HOM05D003921 ORTHO05D004394 3.3e-36 155.6 169 58.6
Lalb_Chr06g0167921 Lupinus albus HOM05D003921 ORTHO05D004394 4.4e-36 155.2 170 55.3
Aa31LG5G22190 Aethionema arabicum HOM05D003921 ORTHO05D004394 5.7e-36 154.8 169 56.2
Aa31LG5G22200 Aethionema arabicum HOM05D003921 ORTHO05D004394 5.7e-36 154.8 169 56.2
COL.COLO4_14179 Corchorus olitorius HOM05D003921 ORTHO05D004394 5.7e-36 154.8 169 59.2
THA.LOC104808294 Tarenaya hassleriana HOM05D003921 ORTHO05D004394 5.7e-36 154.8 166 61.4
EL10Ac4g09457 Beta vulgaris HOM05D003921 ORTHO05D004394 7.5e-36 154.5 155 61.9
ECA233G5254 Erigeron canadensis HOM05D003921 ORTHO05D004394 9.7e-36 154.1 169 59.2
CSS0023430 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 2.8e-35 152.5 154 60.4
HanXRQChr08g0224051 Helianthus annuus HOM05D003921 ORTHO05D004394 3.7e-35 152.1 169 59.2
Oeu019920.1 Olea europaea HOM05D003921 ORTHO05D004394 3.7e-35 152.1 139 63.3
unitig_744.g24672 Utricularia gibba HOM05D003921 ORTHO05D004394 3.7e-35 152.1 166 54.8
AT3G22660 Arabidopsis thaliana HOM05D003921 ORTHO05D004394 4.8e-35 151.8 168 54.8
Duzib084G0641 Durio zibethinus HOM05D003921 ORTHO05D004394 6.3e-35 151.4 168 61.9
Oeu019922.1 Olea europaea HOM05D003921 ORTHO05D004394 8.2e-35 151.0 139 62.6
Carub.0003s2281 Capsella rubella HOM05D003921 ORTHO05D004394 1.1e-34 150.6 168 54.8
ATR0626G386 Amborella trichopoda HOM05D003921 ORTHO05D004394 1.4e-34 150.2 166 54.8
PGR042G0045 Punica granatum HOM05D003921 ORTHO05D004394 1.4e-34 150.2 166 59.6
Nitab4.5_0005477g0070 Nicotiana tabacum HOM05D003921 ORTHO05D004394 1.8e-34 149.8 174 56.3
Nitab4.5_0001620g0040 Nicotiana tabacum HOM05D003921 ORTHO05D004394 9.1e-34 147.5 173 54.9
Atru.chr1.637 Acer truncatum HOM05D003921 ORTHO05D004394 1.6e-33 146.7 168 58.3
ECA234G0656 Erigeron canadensis HOM05D003921 ORTHO05D004394 2.7e-33 146.0 170 58.2
TAR626G1747 Trochodendron aralioides HOM05D003921 ORTHO05D004394 2.7e-33 146.0 117 68.4
Cc02_g03920 Coffea canephora HOM05D003921 ORTHO05D004394 4.5e-33 145.2 138 63.0
HanXRQChr05g0141401 Helianthus annuus HOM05D003921 ORTHO05D004394 1.0e-32 144.1 169 58.0
Lsat_1_v5_gn_6_96180 Lactuca sativa HOM05D003921 ORTHO05D004394 1.7e-32 143.3 167 55.1
ClCG01G005120 Citrullus lanatus HOM05D003921 ORTHO05D004394 2.9e-32 142.5 169 53.3
Lalb_Chr17g0338581 Lupinus albus HOM05D003921 ORTHO05D004394 3.8e-32 142.1 129 65.1
AL3G36960 Arabidopsis lyrata HOM05D003921 ORTHO05D004394 6.5e-32 141.4 169 55.6
FvH4_7g28160 Fragaria vesca HOM05D003921 ORTHO05D004394 6.5e-32 141.4 169 55.0
FAN06G4038 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.1e-31 140.6 169 55.0
TPR.G19495 Trifolium pratense HOM05D002828 ORTHO05D003457 1.5e-31 140.2 134 59.0
CAN.G140.50 Capsicum annuum HOM05D003921 ORTHO05D004394 1.9e-31 139.8 146 67.8
CSS0049059 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 4.2e-31 138.7 121 64.5
Phvul.007G180200 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 5.5e-31 138.3 117 65.8
FAN03G1144 Fragaria x ananassa HOM05D003921 ORTHO05D004394 7.2e-31 137.9 160 55.6
Phvul.007G264700 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 7.2e-31 137.9 117 65.0
Aqoxy1G01610 Aquilegia oxysepala HOM05D003921 ORTHO05D004394 9.4e-31 137.5 167 50.3
Nitab4.5_0004389g0020 Nicotiana tabacum HOM05D003921 ORTHO05D004394 4.7e-30 135.2 167 58.1
TPR.G27266 Trifolium pratense HOM05D003921 ORTHO05D004394 4.7e-30 135.2 136 58.8
MD01G1185600 Malus domestica HOM05D003921 ORTHO05D004394 6.1e-30 134.8 117 65.0
Glyma.20G233800 Glycine max HOM05D003921 ORTHO05D004394 8.0e-30 134.4 168 51.2
Nitab4.5_0000249g0460 Nicotiana tabacum HOM05D003921 ORTHO05D004394 1.4e-29 133.7 156 57.1
Sed0011284 Sechium edule HOM05D003921 ORTHO05D004394 1.4e-29 133.7 169 50.9
BraA03t13433Z Brassica rapa HOM05D003921 ORTHO05D004394 2.3e-29 132.9 172 51.7
FAN01G0440 Fragaria x ananassa HOM05D003921 ORTHO05D004394 3.0e-29 132.5 154 56.5
CSS0011813 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 4.0e-29 132.1 172 52.9
A03p42870 Brassica napus HOM05D003921 ORTHO05D004394 5.2e-29 131.7 171 51.5
FAN03G3435 Fragaria x ananassa HOM05D003921 ORTHO05D004394 5.2e-29 131.7 154 55.8
FAN06G2146 Fragaria x ananassa HOM05D003921 ORTHO05D004394 5.2e-29 131.7 154 55.8
FAN10G0634 Fragaria x ananassa HOM05D003921 ORTHO05D004394 5.2e-29 131.7 154 55.8
Lj3g0006890 Lotus japonicus HOM05D003921 ORTHO05D004394 5.2e-29 131.7 168 50.0
Oeu023230.1 Olea europaea HOM05D003921 ORTHO05D004394 5.2e-29 131.7 118 61.0
A01p32500 Brassica napus HOM05D003921 ORTHO05D004394 6.8e-29 131.3 171 51.5
Prupe.2G282000 Prunus persica HOM05D003921 ORTHO05D004394 6.8e-29 131.3 117 65.0
BcaB04g20506 Brassica carinata HOM05D003921 ORTHO05D004394 1.2e-28 130.6 171 51.5
PSO478G1412 Papaver somniferum HOM05D003921 ORTHO05D004394 1.2e-28 130.6 133 54.1
PSO782G4293 Papaver somniferum HOM05D003921 ORTHO05D004394 1.2e-28 130.6 133 54.1
BraA01t03380Z Brassica rapa HOM05D003921 ORTHO05D004394 1.5e-28 130.2 171 51.5
CANSAT11G2317 Cannabis sativa HOM05D003921 ORTHO05D004394 1.5e-28 130.2 127 63.0
MD07G1257700 Malus domestica HOM05D003921 ORTHO05D004394 1.5e-28 130.2 117 64.1
BcaC01g03432 Brassica carinata HOM05D003921 ORTHO05D004394 2.0e-28 129.8 173 50.9
BcaB04g19210 Brassica carinata HOM05D003921 ORTHO05D004394 2.6e-28 129.4 169 51.5
CiPaw.15G078700 Carya illinoinensis HOM05D003921 ORTHO05D004394 2.6e-28 129.4 117 63.2
VMungo0720G1998 Vigna mungo HOM05D003921 ORTHO05D004394 5.7e-28 128.3 117 61.5
Sed0026547 Sechium edule HOM05D003921 ORTHO05D004394 9.8e-28 127.5 172 50.0
BcaB06g26378 Brassica carinata HOM05D003921 ORTHO05D004394 1.3e-27 127.1 169 51.5
A05p26040 Brassica napus HOM05D003921 ORTHO05D004394 1.3e-27 127.1 169 51.5
C03p52650 Brassica napus HOM05D003921 ORTHO05D004394 1.3e-27 127.1 173 50.3
BraA05t21488Z Brassica rapa HOM05D003921 ORTHO05D004394 1.3e-27 127.1 169 51.5
Thhalv10021245m.g Eutrema salsugineum HOM05D003921 ORTHO05D004394 2.8e-27 125.9 169 49.1
Ca_20760_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 3.7e-27 125.6 117 62.4
Ca_27419_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 3.7e-27 125.6 117 62.4
Ah.06g188100 Amaranthus hybridus HOM05D003921 ORTHO05D004394 2.4e-26 122.9 167 51.5
Ca_31306_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 2.4e-26 122.9 117 61.5
Glyma.10G154500 Glycine max HOM05D003921 ORTHO05D004394 9.1e-26 120.9 168 48.2
BolC3t17533H Brassica oleracea HOM05D003921 ORTHO05D004394 1.2e-25 120.6 173 49.1
Oeu021724.1 Olea europaea HOM05D003921 ORTHO05D004394 2.9e-24 115.9 167 50.3
Zm00001eb104900 Zea mays HOM05D003921 ORTHO05D004394 2.9e-24 115.9 167 50.3
Zm00001eb235000 Zea mays HOM05D003921 ORTHO05D004394 5.0e-24 115.2 167 50.9
Ah.06g188120 Amaranthus hybridus HOM05D003921 ORTHO05D004394 8.5e-24 114.4 171 50.3
Ah.06g188150 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.5e-23 113.6 155 52.3
BcaC09g49188 Brassica carinata HOM05D003921 ORTHO05D004394 1.9e-23 113.2 171 47.4
C01p41660 Brassica napus HOM05D003921 ORTHO05D004394 1.9e-23 113.2 171 47.4
BolC1t04121H Brassica oleracea HOM05D003921 ORTHO05D004394 1.9e-23 113.2 171 47.4
SMO174G0035 Selaginella moellendorffii HOM05D003921 ORTHO05D004394 3.2e-23 112.5 146 50.7
Sp3g20420 Schrenkiella parvula HOM05D003921 ORTHO05D004394 5.5e-23 111.7 175 45.7
GSVIVG01018514001 Vitis vinifera HOM05D003921 ORTHO05D004394 4.0e-21 105.5 118 50.0
Actinidia31394 Actinidia chinensis HOM05D003921 ORTHO05D004394 5.2e-21 105.1 91 65.9
CARHR098540 Cardamine hirsuta HOM05D003921 ORTHO05D004394 2.0e-20 103.2 118 55.1
BcaC05g28029 Brassica carinata HOM05D003921 ORTHO05D004394 2.8e-19 99.4 118 54.2
Medtr5g028350 Medicago truncatula HOM05D003921 ORTHO05D004394 3.7e-19 99.0 119 52.9
Ah.06g188140 Amaranthus hybridus HOM05D003921 ORTHO05D004394 4.9e-19 98.6 151 45.7
BolC5t32786H Brassica oleracea HOM05D003921 ORTHO05D004394 1.1e-18 97.4 118 53.4
AUR62006749 Chenopodium quinoa HOM05D003921 ORTHO05D004394 1.1e-18 97.4 167 45.5
Os07g0475800 Oryza sativa ssp. japonica HOM05D003921 ORTHO05D004394 5.4e-18 95.1 167 46.7
Ciclev10006627m.g Citrus clementina HOM05D003921 ORTHO05D004394 7.0e-18 94.7 171 49.1
CDE08G0595 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 9.2e-18 94.4 104 54.8
Prupe.2G115300 Prunus persica HOM05D003921 ORTHO05D004394 9.2e-18 94.4 160 45.6
Pp3c6_25210 Physcomitrium patens HOM05D003921 ORTHO05D004394 5.0e-16 88.6 154 40.9
SHI13875 Sapria himalayana HOM05D003921 ORTHO05D004394 8.6e-16 87.8 165 40.6
AUR62000393 Chenopodium quinoa HOM05D003921 ORTHO05D004394 1.5e-15 87.0 131 44.3
Ah.06g188080 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.9e-15 86.7 88 60.2
Ca_29708_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 5.6e-15 85.1 85 58.8
Psat2g139240 Pisum sativum HOM05D003921 ORTHO05D004394 2.1e-14 83.2 117 49.6
PRCOL_00003036 Prasinoderma coloniale HOM05D003921 ORTHO05D004394 2.8e-14 82.8 152 40.1
Ca_25165_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 3.0e-13 79.3 79 60.8
ATR0564G120 Amborella trichopoda HOM05D003921 ORTHO05D004394 4.0e-13 79.0 87 54.0
FAN10G0556 Fragaria x ananassa HOM05D003921 ORTHO05D004394 8.9e-13 77.8 98 52.0
Medtr8g075400 Medicago truncatula HOM05D003921 ORTHO05D004394 3.4e-12 75.9 115 44.3
CDE04G0151 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 2.2e-11 73.2 113 46.9
Mapoly0140s0011 Marchantia polymorpha HOM05D003921 ORTHO05D004394 3.2e-10 69.3 168 36.9
AagrBONN_evm.TU.Sc2ySwM_228.1082 Anthoceros agrestis HOM05D003921 ORTHO05D004394 4.1e-10 68.9 199 33.7
MCO16G303 Micromonas commoda HOM05D003921 ORTHO05D004394 4.6e-09 65.5 137 38.7
CBR_g18581 Chara braunii HOM05D001161 ORTHO05D000497 1.7e-08 63.5 159 34.6
Oeu039213.1 Olea europaea HOM05D003921 ORTHO05D004394 2.5e-07 59.7 66 56.1
Prupe.2G115400 Prunus persica HOM05D003921 ORTHO05D004394 5.6e-07 58.5 63 55.6
Cre07.g351750 Chlamydomonas reinhardtii HOM05D003921 ORTHO05D004394 7.3e-07 58.2 161 39.8


User provided reference genes

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