Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.13885 Avicennia marina HOM05D005474 ORTHO05D006551 2.5e-235 818.5 460 100.0
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 1.4e-182 643.3 465 69.5
SalBow8G3265 Salvia bowleyana HOM05D005474 ORTHO05D006551 3.0e-180 635.6 457 69.1
Migut.E01253 Erythranthe guttata HOM05D005474 ORTHO05D006551 2.6e-179 632.5 459 68.4
SalBow1G1678 Salvia bowleyana HOM05D005474 ORTHO05D006551 8.8e-164 580.9 457 63.7
SalBow1G8106 Salvia bowleyana HOM05D005474 ORTHO05D006551 5.7e-163 578.2 457 63.5
Oeu063522.1 Olea europaea HOM05D005474 ORTHO05D006551 7.5e-163 577.8 466 63.1
CSS0001924 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 7.2e-158 561.2 481 58.6
unitig_0.g387 Utricularia gibba HOM05D005474 ORTHO05D006551 6.8e-156 554.7 459 62.1
Actinidia22160 Actinidia chinensis HOM05D005474 ORTHO05D006551 3.4e-155 552.4 476 59.0
Rhsim02G0243400 Rhododendron simsii HOM05D005474 ORTHO05D006551 1.1e-153 547.4 466 59.4
Dinv38831 Davidia involucrata HOM05D005474 ORTHO05D006551 5.4e-153 545.0 476 57.4
Lj2C167G11 Lonicera japonica HOM05D005474 ORTHO05D006551 5.0e-151 538.5 471 57.7
vmacro11424 Vaccinium macrocarpon HOM05D005474 ORTHO05D006551 3.6e-149 532.3 505 55.8
Cc08_g16070 Coffea canephora HOM05D005474 ORTHO05D006551 1.2e-147 527.3 471 55.6
TAR629G2557 Trochodendron aralioides HOM05D005474 ORTHO05D006551 9.8e-147 524.2 476 56.1
Atru.chr9.1979 Acer truncatum HOM05D005474 ORTHO05D006551 5.4e-145 518.5 468 56.8
GSVIVG01019532001 Vitis vinifera HOM05D005474 ORTHO05D006551 7.0e-145 518.1 466 55.4
Atru.chr9.1994 Acer truncatum HOM05D005474 ORTHO05D006551 9.2e-145 517.7 468 56.8
Aqoxy7G00102 Aquilegia oxysepala HOM05D005474 ORTHO05D006551 1.6e-144 516.9 476 56.3
Ciclev10020308m.g Citrus clementina HOM05D005474 ORTHO05D006551 4.6e-144 515.4 469 55.0
Haze_09055 Corylus avellana HOM05D005474 ORTHO05D006551 5.9e-144 515.0 462 56.7
Cfa012014 Carpinus fangiana HOM05D005474 ORTHO05D006551 1.5e-142 510.4 462 56.1
TAR374G0037 Trochodendron aralioides HOM05D005474 ORTHO05D006551 1.5e-142 510.4 470 56.8
PGR042G2806 Punica granatum HOM05D005474 ORTHO05D006551 9.5e-142 507.7 459 55.3
COL.COLO4_10702 Corchorus olitorius HOM05D005474 ORTHO05D006551 1.4e-140 503.8 466 53.2
Prupe.5G120100 Prunus persica HOM05D005474 ORTHO05D006551 1.8e-140 503.4 463 55.9
CsaV3_5G001990 Cucumis sativus L. HOM05D005474 ORTHO05D006551 2.3e-140 503.1 459 57.1
QL02p030435 Quercus lobata HOM05D005474 ORTHO05D006551 2.3e-140 503.1 464 55.4
MELO3C005754.2 Cucumis melo HOM05D005474 ORTHO05D006551 5.2e-140 501.9 459 57.1
Oeu034333.1 Olea europaea HOM05D005474 ORTHO05D006551 5.2e-140 501.9 413 62.5
Potri.003G140000 Populus trichocarpa HOM05D005474 ORTHO05D006551 6.8e-140 501.5 466 54.5
Eucgr.D01738 Eucalyptus grandis HOM05D005474 ORTHO05D006551 1.5e-139 500.4 459 56.2
Sed0014344 Sechium edule HOM05D005474 ORTHO05D006551 2.0e-139 500.0 466 54.3
ClCG01G001840 Citrullus lanatus HOM05D005474 ORTHO05D006551 3.4e-139 499.2 458 56.1
Thecc.03G298100 Theobroma cacao HOM05D005474 ORTHO05D006551 3.4e-139 499.2 471 54.6
Nitab4.5_0002782g0080 Nicotiana tabacum HOM05D005474 ORTHO05D006551 5.8e-139 498.4 471 53.7
Duzib084G1138 Durio zibethinus HOM05D005474 ORTHO05D006551 1.7e-138 496.9 478 53.6
MD14G1128900 Malus domestica HOM05D005474 ORTHO05D006551 1.7e-138 496.9 463 53.6
CAN.G532.121 Capsicum annuum HOM05D005474 ORTHO05D006551 2.2e-138 496.5 468 53.8
Gohir.D12G237600 Gossypium hirsutum HOM05D005474 ORTHO05D006551 2.2e-138 496.5 474 53.4
Gorai.008G254400 Gossypium raimondii HOM05D005474 ORTHO05D006551 2.2e-138 496.5 474 53.2
Gohir.A12G236400 Gossypium hirsutum HOM05D005474 ORTHO05D006551 2.9e-138 496.1 474 53.4
CANSAT21G1635 Cannabis sativa HOM05D005474 ORTHO05D006551 4.9e-138 495.4 470 55.1
Lsat_1_v5_gn_6_83981 Lactuca sativa HOM05D005474 ORTHO05D006551 1.9e-137 493.4 469 54.4
MD06G1107100 Malus domestica HOM05D005474 ORTHO05D006551 2.4e-137 493.0 468 54.3
Sed0020716 Sechium edule HOM05D005474 ORTHO05D006551 3.2e-137 492.7 460 54.8
RcHm_v2.0_Chr7g0194791 Rosa chinensis HOM05D005474 ORTHO05D006551 7.0e-137 491.5 460 53.9
Potri.001G091600 Populus trichocarpa HOM05D005474 ORTHO05D006551 3.5e-136 489.2 466 52.6
Manes.01G049100 Manihot esculenta HOM05D005474 ORTHO05D006551 4.6e-136 488.8 477 54.5
FvH4_5g04600 Fragaria vesca HOM05D005474 ORTHO05D006551 6.0e-136 488.4 461 52.7
FAN08G2748 Fragaria x ananassa HOM05D005474 ORTHO05D006551 1.0e-135 487.6 461 52.7
FAN18G1504 Fragaria x ananassa HOM05D005474 ORTHO05D006551 1.0e-135 487.6 461 52.7
PGSC0003DMG400012286 Solanum tuberosum HOM05D005474 ORTHO05D006551 1.7e-135 486.9 474 52.7
FAN04G1263 Fragaria x ananassa HOM05D005474 ORTHO05D006551 3.0e-135 486.1 460 52.0
FAN18G3330 Fragaria x ananassa HOM05D005474 ORTHO05D006551 3.0e-135 486.1 457 53.0
TPR.G25600 Trifolium pratense HOM05D005474 ORTHO05D006551 3.0e-135 486.1 460 52.0
TWI56G1439 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 8.6e-135 484.6 459 54.0
TWI12G0204 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 1.1e-134 484.2 459 54.2
Sabra01G0068000 Salix brachista HOM05D005474 ORTHO05D006551 1.5e-134 483.8 484 52.9
VMungo1215G0769 Vigna mungo HOM05D005474 ORTHO05D006551 1.9e-134 483.4 461 52.9
FAN13G0565 Fragaria x ananassa HOM05D005474 ORTHO05D006551 2.5e-134 483.0 461 52.9
Lalb_Chr05g0211531 Lupinus albus HOM05D005474 ORTHO05D006551 3.3e-134 482.6 464 52.4
ATR0602G179 Amborella trichopoda HOM05D005474 ORTHO05D006551 5.6e-134 481.9 468 51.7
Sopen08g030580 Solanum pennellii HOM05D005474 ORTHO05D006551 5.6e-134 481.9 474 52.1
CiPaw.11G121500 Carya illinoinensis HOM05D005474 ORTHO05D006551 7.3e-134 481.5 436 55.3
Psat2g185600 Pisum sativum HOM05D005474 ORTHO05D006551 9.5e-134 481.1 460 50.9
Medtr5g009240 Medicago truncatula HOM05D005474 ORTHO05D006551 1.2e-133 480.7 461 51.4
Ca_24501_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 1.6e-133 480.3 465 51.4
Ca_29734_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 1.6e-133 480.3 465 51.4
Phvul.002G164600 Phaseolus vulgaris HOM05D005474 ORTHO05D006551 2.1e-133 479.9 463 52.5
Solyc08g082320.3 Solanum lycopersicum HOM05D005474 ORTHO05D006551 2.1e-133 479.9 474 52.1
Glyma.01G225700 Glycine max HOM05D005474 ORTHO05D006551 3.6e-133 479.2 460 51.7
HanXRQChr03g0083521 Helianthus annuus HOM05D005474 ORTHO05D006551 3.6e-133 479.2 434 56.2
Cpa.g.sc128.67 Carica papaya HOM05D005474 ORTHO05D006551 1.4e-132 477.2 469 52.7
PSO170G1345 Papaver somniferum HOM05D005474 ORTHO05D006551 4.0e-132 475.7 469 52.7
Lalb_Chr16g0376951 Lupinus albus HOM05D005474 ORTHO05D006551 1.5e-131 473.8 456 51.5
Hund14220 Selenicereus undatus HOM05D005474 ORTHO05D006551 1.3e-130 470.7 480 49.2
ECA240G1977 Erigeron canadensis HOM05D005474 ORTHO05D006551 1.7e-130 470.3 464 53.2
AUR62019839 Chenopodium quinoa HOM05D005474 ORTHO05D006551 3.7e-130 469.2 463 50.8
AUR62010840 Chenopodium quinoa HOM05D005474 ORTHO05D006551 8.3e-130 468.0 477 49.9
Peaxi162Scf00074g00931 Petunia axillaris HOM05D005474 ORTHO05D006551 2.4e-129 466.5 445 52.4
Sp7g21810 Schrenkiella parvula HOM05D005474 ORTHO05D006551 2.4e-129 466.5 463 51.0
THA.LOC104806435 Tarenaya hassleriana HOM05D005474 ORTHO05D006551 3.2e-129 466.1 465 50.3
Os06g0529800 Oryza sativa ssp. japonica HOM05D005474 ORTHO05D006551 7.1e-129 464.9 459 51.0
HPP92_026770 Vanilla planifolia HOM05D005474 ORTHO05D006551 7.8e-128 461.5 465 50.1
LjContig00312_ERROPOS870357g0016174 Lotus japonicus HOM05D005474 ORTHO05D006551 1.3e-127 460.7 466 50.2
CARHR231240 Cardamine hirsuta HOM05D005474 ORTHO05D006551 1.7e-127 460.3 473 51.2
arahy.Tifrunner.gnm1.ann1.Z0ACGZ Arachis hypogaea HOM05D005474 ORTHO05D006551 1.6e-125 453.8 515 46.2
Thhalv10025382m.g Eutrema salsugineum HOM05D005474 ORTHO05D006551 4.7e-125 452.2 469 51.0
Aa31LG6G7070 Aethionema arabicum HOM05D005474 ORTHO05D006551 8.1e-125 451.4 464 50.2
AL7G29500 Arabidopsis lyrata HOM05D005474 ORTHO05D006551 8.9e-124 448.0 464 54.3
BcaNung01092 Brassica carinata HOM05D005474 ORTHO05D006551 3.4e-123 446.0 460 50.4
Sabra03G0101000 Salix brachista HOM05D005474 ORTHO05D006551 4.4e-123 445.7 571 44.0
Glyma.11G017200 Glycine max HOM05D005474 ORTHO05D006551 9.9e-123 444.5 435 51.5
PSO063G4762 Papaver somniferum HOM05D005474 ORTHO05D006551 1.7e-122 443.7 445 51.9
Carub.0007s1727 Capsella rubella HOM05D005474 ORTHO05D006551 2.9e-122 443.0 478 48.3
Sc22g0005000 Simmondsia chinensis HOM05D005474 ORTHO05D006551 1.1e-121 441.0 459 49.5
arahy.Tifrunner.gnm1.ann1.1UFI8K Arachis hypogaea HOM05D005474 ORTHO05D006551 5.4e-121 438.7 543 43.8
EL10Ac5g12915 Beta vulgaris HOM05D005474 ORTHO05D006551 7.1e-121 438.3 498 45.8
AT4G23860 Arabidopsis thaliana HOM05D005474 ORTHO05D006551 1.6e-120 437.2 466 52.8
Zm00001eb277940 Zea mays HOM05D005474 ORTHO05D006551 2.7e-120 436.4 459 49.0
CiPaw.12G083000 Carya illinoinensis HOM05D005474 ORTHO05D006551 6.0e-120 435.3 459 49.5
BolC1t01832H Brassica oleracea HOM05D005474 ORTHO05D006551 7.8e-120 434.9 466 48.9
A01p15160 Brassica napus HOM05D005474 ORTHO05D006551 3.9e-119 432.6 466 47.6
BcaC09g50941 Brassica carinata HOM05D005474 ORTHO05D006551 7.3e-118 428.3 466 48.1
C01p19060 Brassica napus HOM05D005474 ORTHO05D006551 7.3e-118 428.3 466 48.1
BraA01t01454Z Brassica rapa HOM05D005474 ORTHO05D006551 2.1e-117 426.8 466 47.2
Hma1.2p1_1746F.1_g300392 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 2.2e-106 390.2 391 51.9
Hma1.2p1_1746F.1_g300400 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 2.2e-106 390.2 391 51.9
SMO200G0193 Selaginella moellendorffii HOM05D005474 ORTHO05D006551 2.4e-100 370.2 446 43.3
Pp3c7_4800 Physcomitrium patens HOM05D005474 ORTHO05D006551 2.6e-99 366.7 460 41.3
Mapoly0095s0049 Marchantia polymorpha HOM05D005474 ORTHO05D006551 1.3e-98 364.4 450 40.0
Pp3c18_8230 Physcomitrium patens HOM05D005474 ORTHO05D006551 1.8e-95 354.0 466 41.0
MBI06_g08456_MAGBIO Magnolia biondii HOM05D005474 ORTHO05D006551 1.5e-94 350.9 205 75.1
CDE02G2859 Ceratophyllum demersum HOM05D002290 ORTHO05D002532 7.6e-91 338.6 200 74.5
PGSC0003DMG401028714 Solanum tuberosum HOM05D005474 ORTHO05D006551 2.5e-89 333.6 210 72.4
CSS0018913 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 6.3e-85 318.9 170 80.6
Nn3g19016 Nelumbo nucifera HOM05D005474 ORTHO05D006551 1.5e-83 314.3 480 40.0
SEGI_30990 Sequoiadendron giganteum HOM05D005474 ORTHO05D006551 1.3e-79 301.2 427 40.3
DCAR_027700 Daucus carota HOM05D005474 ORTHO05D006551 5.9e-75 285.8 467 37.5
CSS0034140 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 7.2e-73 278.9 141 84.4
TAR636G0569 Trochodendron aralioides HOM05D005474 ORTHO05D006551 1.0e-71 275.0 149 79.2
CSS0004779 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 2.0e-67 260.8 144 78.5
CBR_g50475 Chara braunii HOM05D005474 ORTHO05D006551 4.5e-67 259.6 540 31.3
PSO017G5523 Papaver somniferum HOM05D005474 ORTHO05D006551 9.7e-54 215.3 121 74.4
unitig_0.g2293 Utricularia gibba HOM05D005474 ORTHO05D006551 4.2e-49 199.9 141 73.0
CSS0021446 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 1.8e-44 184.5 91 83.5
Duzib084G0281 Durio zibethinus HOM05D005474 ORTHO05D006551 2.0e-30 137.9 83 77.1
PGSC0003DMG400011405 Solanum tuberosum HOM05D005474 ORTHO05D006551 3.2e-28 130.6 249 32.9
Hma1.2p1_1746F.1_g300390 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 7.0e-28 129.4 73 80.8
Hma1.2p1_1746F.1_g300398 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 7.0e-28 129.4 73 80.8
SEGI_08425 Sequoiadendron giganteum HOM05D005474 ORTHO05D006551 3.3e-25 120.6 64 79.7
SHI06991 Sapria himalayana HOM05D005474 ORTHO05D006551 2.6e-22 110.9 59 78.0
CDE08G0829 Ceratophyllum demersum HOM05D005474 ORTHO05D006551 2.7e-19 100.9 68 70.6
Ah.07g197430 Amaranthus hybridus HOM05D005474 ORTHO05D006551 5.0e-18 96.7 58 62.1
Cfa025394 Carpinus fangiana HOM05D005474 ORTHO05D122676 1.8e-15 88.2 158 34.2
PGSC0003DMG402028714 Solanum tuberosum HOM05D005474 ORTHO05D006551 8.9e-15 85.9 74 59.5
MBI18_g28764_MAGBIO Magnolia biondii HOM05D005474 ORTHO05D006551 3.2e-12 77.4 61 62.3
Nitab4.5_0000829g0030 Nicotiana tabacum HOM05D005474 ORTHO05D006551 5.4e-12 76.6 77 55.8


User provided reference genes

Program Settings