Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.13839 Avicennia marina HOM05D005554 ORTHO05D007823 0.0e+00 1508.4 773 100.0
SalBow1G4020 Salvia bowleyana HOM05D005554 ORTHO05D007823 0.0e+00 1243.8 761 82.0
Oeu064085.1 Olea europaea HOM05D005554 ORTHO05D007823 0.0e+00 1233.0 775 80.8
Migut.E01089 Erythranthe guttata HOM05D005554 ORTHO05D007823 0.0e+00 1219.9 772 80.6
Cc08_g14820 Coffea canephora HOM05D005554 ORTHO05D007823 0.0e+00 1181.4 787 77.8
Peaxi162Scf00119g01015 Petunia axillaris HOM05D005554 ORTHO05D007823 0.0e+00 1172.5 783 77.3
Sopen08g029470 Solanum pennellii HOM05D005554 ORTHO05D007823 0.0e+00 1168.7 776 78.7
PGSC0003DMG402012338 Solanum tuberosum HOM05D005554 ORTHO05D007823 0.0e+00 1166.8 776 78.1
Nitab4.5_0001615g0110 Nicotiana tabacum HOM05D005554 ORTHO05D007823 0.0e+00 1166.4 778 77.6
Solyc08g081170.4 Solanum lycopersicum HOM05D005554 ORTHO05D007823 0.0e+00 1165.6 785 78.0
CSS0044545 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 0.0e+00 1158.3 784 76.4
Nn6g33413 Nelumbo nucifera HOM05D005554 ORTHO05D007823 0.0e+00 1157.5 778 76.2
Prupe.5G101100 Prunus persica HOM05D005554 ORTHO05D007823 0.0e+00 1153.7 728 80.6
Dinv38934 Davidia involucrata HOM05D005554 ORTHO05D007823 0.0e+00 1151.7 776 78.5
TAR375G0921 Trochodendron aralioides HOM05D005554 ORTHO05D007823 0.0e+00 1147.5 734 78.9
Gohir.D12G231000 Gossypium hirsutum HOM05D005554 ORTHO05D007823 0.0e+00 1146.7 750 78.0
PGR031G2745 Punica granatum HOM05D005554 ORTHO05D007823 0.0e+00 1145.6 782 76.6
Ciclev10018956m.g Citrus clementina HOM05D005554 ORTHO05D007823 0.0e+00 1144.4 779 75.7
MD06G1085100 Malus domestica HOM05D005554 ORTHO05D007823 0.0e+00 1140.9 728 79.7
CANSAT21G2493 Cannabis sativa HOM05D005554 ORTHO05D007823 0.0e+00 1140.2 782 75.6
Gorai.008G247200 Gossypium raimondii HOM05D005554 ORTHO05D007823 0.0e+00 1140.2 750 77.9
Gohir.A12G229900 Gossypium hirsutum HOM05D005554 ORTHO05D007823 0.0e+00 1139.8 746 77.7
Aqoxy7G00299 Aquilegia oxysepala HOM05D005554 ORTHO05D007823 0.0e+00 1132.9 770 75.7
Duzib205G0518 Durio zibethinus HOM05D005554 ORTHO05D007823 0.0e+00 1126.7 778 75.2
Atru.chr9.2175 Acer truncatum HOM05D005554 ORTHO05D007823 0.0e+00 1125.9 787 73.8
Nitab4.5_0010813g0010 Nicotiana tabacum HOM05D005554 ORTHO05D007823 0.0e+00 1123.2 826 71.9
QL12p032791 Quercus lobata HOM05D005554 ORTHO05D007823 0.0e+00 1120.9 776 74.7
Thecc.03G279900 Theobroma cacao HOM05D005554 ORTHO05D007823 0.0e+00 1120.9 741 77.3
FAN04G0002 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1119.8 724 78.7
RcHm_v2.0_Chr7g0197491 Rosa chinensis HOM05D005554 ORTHO05D007823 0.0e+00 1119.0 728 78.8
unitig_26.g9706 Utricularia gibba HOM05D005554 ORTHO05D007823 0.0e+00 1115.9 774 75.1
FAN18G3000 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1114.8 725 78.2
Cpa.g.sc74.56 Carica papaya HOM05D005554 ORTHO05D007823 0.0e+00 1113.2 759 75.5
FAN08G3292 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1112.4 763 75.6
CiPaw.12G092300 Carya illinoinensis HOM05D005554 ORTHO05D007823 0.0e+00 1112.1 758 75.7
DCAR_000617 Daucus carota HOM05D005554 ORTHO05D007823 0.0e+00 1111.7 767 74.4
FAN13G2706 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1109.7 724 78.0
CsaV3_5G002730 Cucumis sativus L. HOM05D005554 ORTHO05D007823 0.0e+00 1109.4 740 76.5
Potri.001G103300 Populus trichocarpa HOM05D005554 ORTHO05D007823 0.0e+00 1109.0 750 75.5
Actinidia14567 Actinidia chinensis HOM05D005554 ORTHO05D007823 0.0e+00 1106.7 702 79.3
CAN.G774.53 Capsicum annuum HOM05D005554 ORTHO05D007823 0.0e+00 1106.3 705 80.1
PSO478G3044 Papaver somniferum HOM05D005554 ORTHO05D007823 0.0e+00 1103.6 721 77.1
Lj2C185T6 Lonicera japonica HOM05D005554 ORTHO05D007823 0.0e+00 1102.0 771 73.8
Eucgr.D01840 Eucalyptus grandis HOM05D005554 ORTHO05D007823 0.0e+00 1101.7 736 76.6
COL.COLO4_34475 Corchorus olitorius HOM05D005554 ORTHO05D007823 0.0e+00 1099.0 718 79.0
PSO782G1990 Papaver somniferum HOM05D005554 ORTHO05D007823 0.0e+00 1098.6 721 76.6
Hma1.2p1_0377F.1_g139310 Hydrangea macrophylla HOM05D005554 ORTHO05D007823 0.0e+00 1095.1 719 78.2
THA.LOC104823588 Tarenaya hassleriana HOM05D005554 ORTHO05D007823 0.0e+00 1086.6 786 71.2
TWI15G0555 Tripterygium wilfordii HOM05D005554 ORTHO05D007823 0.0e+00 1082.8 783 71.4
Manes.02G019800 Manihot esculenta HOM05D005554 ORTHO05D007823 0.0e+00 1081.6 729 75.4
MELO3C005683.2 Cucumis melo HOM05D005554 ORTHO05D007823 0.0e+00 1077.0 734 75.7
Sabra01G0078000 Salix brachista HOM05D005554 ORTHO05D007823 0.0e+00 1075.8 807 70.6
Hund14815 Selenicereus undatus HOM05D005554 ORTHO05D007823 5.3e-312 1074.7 780 70.8
AUR62003173 Chenopodium quinoa HOM05D005554 ORTHO05D007823 5.3e-312 1073.9 767 73.7
Ah.10g034840 Amaranthus hybridus HOM05D005554 ORTHO05D007823 1.6e-311 1072.4 774 72.2
Lalb_Chr05g0224711 Lupinus albus HOM05D005554 ORTHO05D007823 6.8e-310 1067.0 773 71.3
SGA_v2.0_scaffold144G35937 Striga asiatica HOM05D005554 ORTHO05D007823 8.9e-310 1066.6 730 75.5
ATR0680G162 Amborella trichopoda HOM05D005554 ORTHO05D007823 4.9e-308 1060.8 727 73.6
Ca_17525_v3 Cicer arietinum L. HOM05D005554 ORTHO05D007823 7.8e-306 1053.5 775 71.0
arahy.Tifrunner.gnm1.ann1.C4WXPV Arachis hypogaea HOM05D005554 ORTHO05D007823 5.1e-305 1050.8 759 71.5
EL10Ac6g14928 Beta vulgaris HOM05D005554 ORTHO05D007823 1.1e-304 1049.7 785 71.3
Sc01g0009640 Simmondsia chinensis HOM05D005554 ORTHO05D007823 1.5e-304 1049.3 726 73.1
arahy.Tifrunner.gnm1.ann1.CVD0A8 Arachis hypogaea HOM05D005554 ORTHO05D007823 2.5e-304 1048.5 757 71.7
Glyma.08G015200 Glycine max HOM05D005554 ORTHO05D007823 6.2e-303 1043.9 751 71.8
Glyma.05G208600 Glycine max HOM05D005554 ORTHO05D007823 1.1e-302 1043.1 726 73.0
Glyma.05G208921 Glycine max HOM05D005554 ORTHO05D007823 1.1e-302 1043.1 726 73.0
VMungo0251G0638 Vigna mungo HOM05D005554 ORTHO05D007823 2.6e-301 1038.5 743 72.5
Sp2g00970 Schrenkiella parvula HOM05D005554 ORTHO05D007823 5.8e-301 1037.3 795 67.8
Phvul.002G290300 Phaseolus vulgaris HOM05D005554 ORTHO05D007823 3.8e-300 1034.6 725 72.6
vmacro11364 Vaccinium macrocarpon HOM05D005554 ORTHO05D007823 4.9e-300 1034.2 837 65.5
AL2G11550 Arabidopsis lyrata HOM05D005554 ORTHO05D007823 7.1e-299 1030.4 788 68.1
AT1G63680 Arabidopsis thaliana HOM05D005554 ORTHO05D007823 1.2e-298 1029.6 780 69.4
Carub.0002s0117 Capsella rubella HOM05D005554 ORTHO05D007823 1.3e-297 1026.2 781 67.9
ClCG01G002630 Citrullus lanatus HOM05D005554 ORTHO05D007823 1.7e-297 1025.8 682 76.5
Lj4g0004686 Lotus japonicus HOM05D005554 ORTHO05D007823 1.9e-296 1022.3 774 69.5
Aa31LG2G890 Aethionema arabicum HOM05D005554 ORTHO05D007823 2.5e-296 1021.9 780 67.9
Thhalv10023292m.g Eutrema salsugineum HOM05D005554 ORTHO05D007823 2.5e-296 1021.9 781 67.6
BcaB07g31556 Brassica carinata HOM05D005554 ORTHO05D007823 2.1e-295 1018.8 779 67.8
BcaC04g22690 Brassica carinata HOM05D005554 ORTHO05D007823 4.7e-295 1017.7 774 68.9
Medtr8g098345 Medicago truncatula HOM05D005554 ORTHO05D007823 2.4e-294 1015.4 760 70.3
Lsat_1_v5_gn_3_6620 Lactuca sativa HOM05D005554 ORTHO05D007823 1.5e-293 1012.7 775 68.1
Psat7g032760 Pisum sativum HOM05D005554 ORTHO05D007823 1.5e-293 1012.7 774 68.9
MBI18_g45367_MAGBIO Magnolia biondii HOM05D005554 ORTHO05D007823 2.0e-293 1012.3 649 78.7
BraA09t37033Z Brassica rapa HOM05D005554 ORTHO05D007823 9.9e-293 1010.0 773 68.0
A09p13810 Brassica napus HOM05D005554 ORTHO05D007823 1.7e-292 1009.2 773 67.9
FvH4_5g02610 Fragaria vesca HOM05D005554 ORTHO05D007823 1.7e-292 1009.2 671 77.0
CARHR047660 Cardamine hirsuta HOM05D005554 ORTHO05D007823 2.2e-292 1008.8 784 66.6
CDE05G1777 Ceratophyllum demersum HOM05D005554 ORTHO05D007823 3.8e-292 1008.1 751 68.7
Sed0016596 Sechium edule HOM05D005554 ORTHO05D007823 1.1e-291 1006.5 682 76.2
C09p16520 Brassica napus HOM05D005554 ORTHO05D007823 1.4e-291 1006.1 768 68.6
AUR62007990 Chenopodium quinoa HOM05D005554 ORTHO05D007823 3.2e-291 1005.0 698 75.1
TPR.G12960 Trifolium pratense HOM05D005554 ORTHO05D007823 4.2e-291 1004.6 765 69.3
BolC9t54561H Brassica oleracea HOM05D005554 ORTHO05D007823 7.1e-291 1003.8 775 67.2
ECA246G2370 Erigeron canadensis HOM05D005554 ORTHO05D007823 1.3e-289 999.6 732 69.4
HanXRQChr06g0165871 Helianthus annuus HOM05D005554 ORTHO05D007823 8.7e-289 996.9 777 66.0
Haze_08788 Corylus avellana HOM05D005554 ORTHO05D007823 4.8e-287 991.1 747 69.7
Gohir.A03G016800 Gossypium hirsutum HOM05D005554 ORTHO05D007823 7.4e-240 834.3 555 74.4
Gorai.003G158300 Gossypium raimondii HOM05D005554 ORTHO05D007823 1.3e-239 833.6 555 74.4
Cfa012222 Carpinus fangiana HOM05D005554 ORTHO05D007823 8.2e-239 830.9 616 71.3
AagrBONN_evm.TU.Sc2ySwM_228.1600 Anthoceros agrestis HOM05D005554 ORTHO05D007823 3.0e-233 812.4 719 57.7
Mapoly0091s0082 Marchantia polymorpha HOM05D005554 ORTHO05D007823 2.6e-232 809.3 737 58.2
Os10g0548900 Oryza sativa ssp. japonica HOM05D005554 ORTHO05D007823 3.5e-229 798.9 714 59.9
Pp3c24_18820 Physcomitrium patens HOM05D005554 ORTHO05D007823 2.1e-226 789.6 728 55.4
Zm00001eb391750 Zea mays HOM05D005554 ORTHO05D007823 1.0e-225 787.3 712 59.1
HPP92_014728 Vanilla planifolia HOM05D005554 ORTHO05D007823 2.8e-215 752.7 541 65.6
CBR_g32224 Chara braunii HOM05D005554 ORTHO05D007823 8.0e-210 734.6 529 66.7
SMO147G0132 Selaginella moellendorffii HOM05D005554 ORTHO05D007823 3.0e-209 732.6 531 66.1
Pp3c23_15810 Physcomitrium patens HOM05D005554 ORTHO05D007823 1.1e-190 671.0 518 62.9
Gohir.D03G151100 Gossypium hirsutum HOM05D005554 ORTHO05D007823 1.0e-188 664.5 414 78.7
GSVIVG01019746001 Vitis vinifera HOM05D005554 ORTHO05D007823 3.3e-171 606.3 403 76.4
HPP92_020853 Vanilla planifolia HOM05D005554 ORTHO05D007823 9.3e-158 561.6 414 65.2
Lj2C0T8 Lonicera japonica HOM05D005554 ORTHO05D007823 2.2e-146 523.9 343 77.0
HPP92_008494 Vanilla planifolia HOM05D005554 ORTHO05D007823 1.8e-129 467.6 269 82.5
PRCOL_00002248 Prasinoderma coloniale HOM05D005554 ORTHO05D007823 2.3e-100 370.9 690 35.8
Oeu007749.1 Olea europaea HOM05D005554 ORTHO05D007823 2.6e-99 367.5 623 42.9
MCO12G378 Micromonas commoda HOM05D005554 ORTHO05D007823 5.4e-97 359.8 491 42.2
CAN.G20.10 Capsicum annuum HOM05D005554 ORTHO05D007823 1.7e-95 354.8 295 63.7
HPP92_008493 Vanilla planifolia HOM05D005554 ORTHO05D007823 1.8e-92 344.7 266 62.4
Lj2C0T9 Lonicera japonica HOM05D005554 ORTHO05D007823 7.1e-81 306.2 280 61.1
Actinidia02000 Actinidia chinensis HOM05D005554 ORTHO05D007823 2.4e-68 264.6 351 47.0
Cre12.g519900 Chlamydomonas reinhardtii HOM05D005554 ORTHO05D007823 2.6e-67 261.2 583 32.2
SEGI_34096 Sequoiadendron giganteum HOM05D005554 ORTHO05D007823 1.7e-42 178.7 99 83.8
CSS0006848 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 1.1e-36 159.5 83 86.7
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 2.1e-32 145.2 129 61.2
BcaB04g18522 Brassica carinata HOM05D005554 ORTHO05D021652 2.7e-32 144.8 100 71.0
MD14G1106100 Malus domestica HOM05D005554 ORTHO05D026402 1.6e-24 119.0 124 54.0
HPP92_008492 Vanilla planifolia HOM05D005554 ORTHO05D026402 4.6e-24 117.5 124 54.0
MD14G1106300 Malus domestica HOM05D005554 ORTHO05D007823 6.3e-21 107.1 54 87.0
Sabra03G0091300 Salix brachista HOM05D008679 ORTHO05D010804 1.6e-16 92.4 103 49.5
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 1.7e-13 82.4 206 33.5
BcaB07g30213 Brassica carinata HOM05D005554 ORTHO05D021652 1.3e-10 72.8 74 56.8
MD14G1106200 Malus domestica HOM05D005554 ORTHO05D007823 6.5e-10 70.5 41 75.6
Actinidia02001 Actinidia chinensis HOM05D005554 ORTHO05D026402 6.1e-08 63.9 69 44.9
MBI06_g27478_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 5.2e-07 60.8 377 23.1
Pp3c5_9920 Physcomitrium patens HOM05D005554 ORTHO05D007823 1.1e-06 59.7 80 42.5
Pp3c3_2590 Physcomitrium patens HOM05D005554 ORTHO05D313840 7.5e-06 57.0 101 35.6


User provided reference genes

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