Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.1348 Avicennia marina HOM05D004883 ORTHO05D005766 1.8e-63 245.7 125 100.0
Migut.C00579 Erythranthe guttata HOM05D004883 ORTHO05D005766 7.4e-57 223.8 125 89.6
Migut.N02708 Erythranthe guttata HOM05D004883 ORTHO05D005766 7.4e-57 223.8 125 89.6
SalBow7G2082 Salvia bowleyana HOM05D004883 ORTHO05D005766 1.3e-56 223.0 122 91.0
Oeu057282.1 Olea europaea HOM05D004883 ORTHO05D005766 1.4e-55 219.5 125 86.4
SalBow3G1199 Salvia bowleyana HOM05D004883 ORTHO05D005766 1.4e-55 219.5 119 92.4
Oeu044836.1 Olea europaea HOM05D004883 ORTHO05D005766 9.1e-55 216.9 125 86.4
Peaxi162Scf00010g00308 Petunia axillaris HOM05D004883 ORTHO05D005766 1.2e-54 216.5 123 87.0
Actinidia38058 Actinidia chinensis HOM05D004883 ORTHO05D005766 2.0e-54 215.7 125 85.6
Cc10_g04160 Coffea canephora HOM05D004883 ORTHO05D005766 2.0e-54 215.7 119 88.2
Rhsim07G0228400 Rhododendron simsii HOM05D004883 ORTHO05D005766 7.7e-54 213.8 125 82.4
vmacro04449 Vaccinium macrocarpon HOM05D004883 ORTHO05D005766 7.7e-54 213.8 125 83.2
GSVIVG01009495001 Vitis vinifera HOM05D004883 ORTHO05D005766 7.7e-54 213.8 125 83.2
Cpa.g.sc49.21 Carica papaya HOM05D004883 ORTHO05D005766 1.3e-53 213.0 122 86.1
Atru.chr13.693 Acer truncatum HOM05D004883 ORTHO05D005766 1.7e-53 212.6 125 81.6
Dinv35960 Davidia involucrata HOM05D004883 ORTHO05D005766 2.2e-53 212.2 125 82.4
Solyc04g078920.3 Solanum lycopersicum HOM05D004883 ORTHO05D005766 5.0e-53 211.1 123 83.7
Hma1.2p1_0982F.1_g244010 Hydrangea macrophylla HOM05D004883 ORTHO05D005766 6.5e-53 210.7 125 82.4
TAR381G1103 Trochodendron aralioides HOM05D004883 ORTHO05D005766 8.5e-53 210.3 125 82.4
Sopen04g032520 Solanum pennellii HOM05D004883 ORTHO05D005766 1.1e-52 209.9 123 83.7
CiPaw.16G043800 Carya illinoinensis HOM05D004883 ORTHO05D005766 1.5e-52 209.5 123 83.7
Lsat_1_v5_gn_4_125820 Lactuca sativa HOM05D004883 ORTHO05D005766 2.5e-52 208.8 123 83.7
PGR031G0707 Punica granatum HOM05D004883 ORTHO05D005766 3.2e-52 208.4 123 81.3
PGSC0003DMG400007973 Solanum tuberosum HOM05D004883 ORTHO05D005766 3.2e-52 208.4 123 82.9
CSS0025959 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 4.2e-52 208.0 125 80.0
CSS0031938 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 4.2e-52 208.0 125 80.0
Thhalv10003291m.g Eutrema salsugineum HOM05D004883 ORTHO05D005766 9.4e-52 206.8 120 83.3
Nn1g04858 Nelumbo nucifera HOM05D004883 ORTHO05D005766 1.2e-51 206.5 125 83.2
Ciclev10002854m.g Citrus clementina HOM05D004883 ORTHO05D005766 1.6e-51 206.1 125 79.2
Gohir.D01G108200 Gossypium hirsutum HOM05D004883 ORTHO05D005766 2.7e-51 205.3 118 83.1
ECA232G2590 Erigeron canadensis HOM05D004883 ORTHO05D005766 3.6e-51 204.9 125 80.8
HanXRQChr14g0439621 Helianthus annuus HOM05D004883 ORTHO05D005766 8.0e-51 203.8 123 79.7
AUR62012534 Chenopodium quinoa HOM05D004883 ORTHO05D005766 1.0e-50 203.4 119 82.4
Gorai.002G132400 Gossypium raimondii HOM05D004883 ORTHO05D005766 1.0e-50 203.4 119 82.4
Gorai.009G211700 Gossypium raimondii HOM05D004883 ORTHO05D005766 1.0e-50 203.4 119 83.2
QL02p004805 Quercus lobata HOM05D004883 ORTHO05D005766 1.0e-50 203.4 124 82.3
Thecc.08G007300 Theobroma cacao HOM05D004883 ORTHO05D005766 1.4e-50 203.0 119 82.4
BcaB07g31037 Brassica carinata HOM05D004883 ORTHO05D005766 1.8e-50 202.6 119 82.4
COL.COLO4_26509 Corchorus olitorius HOM05D004883 ORTHO05D005766 2.3e-50 202.2 119 83.2
BcaC04g21964 Brassica carinata HOM05D004883 ORTHO05D005766 3.0e-50 201.8 119 82.4
A09p20040 Brassica napus HOM05D004883 ORTHO05D005766 3.0e-50 201.8 119 82.4
C09p25420 Brassica napus HOM05D004883 ORTHO05D005766 3.0e-50 201.8 119 82.4
BolC9t55441H Brassica oleracea HOM05D004883 ORTHO05D005766 3.0e-50 201.8 119 82.4
BraA09t37617Z Brassica rapa HOM05D004883 ORTHO05D005766 3.0e-50 201.8 119 82.4
AUR62014661 Chenopodium quinoa HOM05D004883 ORTHO05D005766 3.0e-50 201.8 119 81.5
AUR62044174 Chenopodium quinoa HOM05D004883 ORTHO05D005766 3.0e-50 201.8 119 81.5
Glyma.17G242300 Glycine max HOM05D004883 ORTHO05D005766 3.0e-50 201.8 123 80.5
Gohir.D05G205400 Gossypium hirsutum HOM05D004883 ORTHO05D005766 3.0e-50 201.8 119 83.2
Sp2g07620 Schrenkiella parvula HOM05D004883 ORTHO05D005766 3.0e-50 201.8 119 82.4
Sc02g0007090 Simmondsia chinensis HOM05D004883 ORTHO05D005766 3.0e-50 201.8 125 78.4
MD15G1083000 Malus domestica HOM05D004883 ORTHO05D005766 5.2e-50 201.1 125 79.2
BcaC06g31741 Brassica carinata HOM05D004883 ORTHO05D005766 6.7e-50 200.7 119 81.5
Carub.0008s0602 Capsella rubella HOM05D004883 ORTHO05D005766 6.7e-50 200.7 119 81.5
Haze_17525 Corylus avellana HOM05D004883 ORTHO05D005766 6.7e-50 200.7 119 83.2
THA.LOC104822849 Tarenaya hassleriana HOM05D004883 ORTHO05D005766 6.7e-50 200.7 122 81.1
AL8G18060 Arabidopsis lyrata HOM05D004883 ORTHO05D005766 8.8e-50 200.3 119 82.4
AT5G42890 Arabidopsis thaliana HOM05D004883 ORTHO05D005766 8.8e-50 200.3 119 81.5
EL10Ac8g19960 Beta vulgaris HOM05D004883 ORTHO05D005766 8.8e-50 200.3 119 80.7
Gohir.A01G119900 Gossypium hirsutum HOM05D004883 ORTHO05D005766 8.8e-50 200.3 119 80.7
HanXRQChr05g0150871 Helianthus annuus HOM05D004883 ORTHO05D005766 8.8e-50 200.3 123 78.9
Phvul.001G022000 Phaseolus vulgaris HOM05D004883 ORTHO05D005766 8.8e-50 200.3 125 79.2
VMungo0647G0758 Vigna mungo HOM05D004883 ORTHO05D005766 8.8e-50 200.3 125 78.4
DCAR_012777 Daucus carota HOM05D004883 ORTHO05D005766 1.2e-49 199.9 121 79.3
Glyma.14G082800 Glycine max HOM05D004883 ORTHO05D005766 1.5e-49 199.5 123 79.7
arahy.Tifrunner.gnm1.ann1.09A9GY Arachis hypogaea HOM05D004883 ORTHO05D005766 2.0e-49 199.1 124 78.2
arahy.Tifrunner.gnm1.ann1.B0E7W8 Arachis hypogaea HOM05D004883 ORTHO05D005766 2.0e-49 199.1 124 78.2
Eucgr.F02346 Eucalyptus grandis HOM05D004883 ORTHO05D005766 2.0e-49 199.1 155 69.0
Prupe.1G435500 Prunus persica HOM05D004883 ORTHO05D005766 2.0e-49 199.1 125 78.4
Lsat_1_v5_gn_6_112040 Lactuca sativa HOM05D004883 ORTHO05D005766 3.3e-49 198.4 122 78.7
Ah.09g236860 Amaranthus hybridus HOM05D004883 ORTHO05D005766 4.4e-49 198.0 119 79.8
Duzib093G0126 Durio zibethinus HOM05D004883 ORTHO05D005766 4.4e-49 198.0 110 85.5
Hund21302 Selenicereus undatus HOM05D004883 ORTHO05D005766 4.4e-49 198.0 118 79.7
THA.LOC104814168 Tarenaya hassleriana HOM05D004883 ORTHO05D005766 4.4e-49 198.0 122 79.5
Medtr1g019430 Medicago truncatula HOM05D004883 ORTHO05D005766 7.5e-49 197.2 123 78.9
Aa31LG9G12950 Aethionema arabicum HOM05D004883 ORTHO05D005766 9.7e-49 196.8 122 80.3
Lj5g0012185 Lotus japonicus HOM05D004883 ORTHO05D005766 9.7e-49 196.8 124 78.2
MD08G1101600 Malus domestica HOM05D004883 ORTHO05D005766 1.3e-48 196.4 125 77.6
Sed0005554 Sechium edule HOM05D004883 ORTHO05D005766 1.7e-48 196.1 121 76.0
CARHR181250 Cardamine hirsuta HOM05D004883 ORTHO05D005766 2.8e-48 195.3 119 79.8
DCAR_020929 Daucus carota HOM05D004883 ORTHO05D005766 2.8e-48 195.3 119 78.2
ECA246G2602 Erigeron canadensis HOM05D004883 ORTHO05D005766 2.8e-48 195.3 125 77.6
Gohir.D06G016900 Gossypium hirsutum HOM05D004883 ORTHO05D005766 3.7e-48 194.9 121 77.7
Gorai.010G019800 Gossypium raimondii HOM05D004883 ORTHO05D005766 3.7e-48 194.9 121 77.7
PSO210G0389 Papaver somniferum HOM05D004883 ORTHO05D005766 4.8e-48 194.5 119 81.5
PSO170G5588 Papaver somniferum HOM05D004883 ORTHO05D005766 6.3e-48 194.1 119 81.5
ATR1102G009 Amborella trichopoda HOM05D004883 ORTHO05D005766 1.1e-47 193.4 122 79.5
FvH4_2g34441 Fragaria vesca HOM05D004883 ORTHO05D005766 1.1e-47 193.4 125 76.8
Lalb_Chr22g0355131 Lupinus albus HOM05D004883 ORTHO05D005766 1.4e-47 193.0 125 75.2
Gohir.A05G202300 Gossypium hirsutum HOM05D004883 ORTHO05D005766 1.8e-47 192.6 109 84.4
FAN20G2534 Fragaria x ananassa HOM05D004883 ORTHO05D005766 2.4e-47 192.2 125 76.0
CDE08G1634 Ceratophyllum demersum HOM05D004883 ORTHO05D005766 4.1e-47 191.4 119 79.0
TPR.G3781 Trifolium pratense HOM05D004883 ORTHO05D005766 7.0e-47 190.7 123 77.2
Ca_13291_v3 Cicer arietinum L. HOM05D004883 ORTHO05D005766 9.1e-47 190.3 125 72.8
FAN27G2225 Fragaria x ananassa HOM05D004883 ORTHO05D005766 9.1e-47 190.3 124 75.0
Os06g0211300 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 9.1e-47 190.3 119 78.2
Psat1g147680 Pisum sativum HOM05D004883 ORTHO05D005766 1.6e-46 189.5 125 73.6
ClCG05G019880 Citrullus lanatus HOM05D004883 ORTHO05D005766 2.7e-46 188.7 124 71.8
Aqoxy5G01236 Aquilegia oxysepala HOM05D004883 ORTHO05D005766 7.7e-46 187.2 125 74.4
CsaV3_4G034310 Cucumis sativus L. HOM05D004883 ORTHO05D005766 3.8e-45 184.9 124 70.2
RcHm_v2.0_Chr6g0307931 Rosa chinensis HOM05D004883 ORTHO05D005766 5.0e-45 184.5 125 72.8
FvH4_2g34440 Fragaria vesca HOM05D004883 ORTHO05D005766 1.5e-44 183.0 125 72.0
TWI36G0538 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 9.4e-44 180.3 125 73.6
MELO3C016751.2 Cucumis melo HOM05D004883 ORTHO05D005766 1.2e-43 179.9 130 68.5
Hund23571 Selenicereus undatus HOM05D004883 ORTHO05D005766 2.1e-43 179.1 119 69.7
Duzib041G0234 Durio zibethinus HOM05D004883 ORTHO05D005766 1.4e-42 176.4 119 74.8
Os02g0765800 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 2.3e-42 175.6 119 70.6
Nitab4.5_0000287g0320 Nicotiana tabacum HOM05D004883 ORTHO05D005766 3.0e-42 175.3 123 74.0
Nitab4.5_0003118g0020 Nicotiana tabacum HOM05D004883 ORTHO05D005766 3.0e-42 175.3 123 74.0
TWI56G0859 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 3.0e-42 175.3 125 70.4
Manes.05G174000 Manihot esculenta HOM05D004883 ORTHO05D005766 5.2e-42 174.5 122 68.9
SEGI_37934 Sequoiadendron giganteum HOM05D004883 ORTHO05D005766 1.2e-41 173.3 125 67.2
TWI56G0476 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 1.2e-41 173.3 125 69.6
CSS0006435 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 2.0e-41 172.6 124 70.2
Sabra02G0098900 Salix brachista HOM05D004883 ORTHO05D005766 7.5e-41 170.6 119 68.1
MBI06_g02552_MAGBIO Magnolia biondii HOM05D004883 ORTHO05D005766 4.8e-40 167.9 124 71.0
SMO169G0122 Selaginella moellendorffii HOM05D004883 ORTHO05D005766 4.8e-40 167.9 125 67.2
Potri.002G126200 Populus trichocarpa HOM05D004883 ORTHO05D005766 1.1e-39 166.8 119 65.5
Pp3c24_4700 Physcomitrium patens HOM05D004883 ORTHO05D005766 1.4e-39 166.4 125 65.6
Mapoly0033s0053 Marchantia polymorpha HOM05D004883 ORTHO05D005766 4.1e-39 164.9 124 65.3
C03p39670 Brassica napus HOM05D004883 ORTHO05D005766 5.4e-39 164.5 108 76.9
Potri.014G029300 Populus trichocarpa HOM05D004883 ORTHO05D005766 1.7e-37 159.5 119 64.7
Sabra14G0020100 Salix brachista HOM05D004883 ORTHO05D005766 1.5e-36 156.4 119 63.0
MD00G1215600 Malus domestica HOM05D004883 ORTHO05D005766 2.5e-36 155.6 105 72.4
HPP92_013338 Vanilla planifolia HOM05D004883 ORTHO05D005766 2.8e-35 152.1 124 66.1
BcaC09g50201 Brassica carinata HOM05D004883 ORTHO05D005766 3.6e-35 151.8 110 68.2
Manes.18G037300 Manihot esculenta HOM05D004883 ORTHO05D005766 5.2e-34 147.9 122 59.0
TAR625G0321 Trochodendron aralioides HOM05D004883 ORTHO05D005766 8.9e-34 147.1 97 75.3
Peaxi162Scf00252g00711 Petunia axillaris HOM05D004883 ORTHO05D005766 1.4e-31 139.8 123 61.8
CANSAT35G0766 Cannabis sativa HOM05D004883 ORTHO05D005766 2.4e-31 139.0 121 52.9
CAN.G1139.16 Capsicum annuum HOM05D004883 ORTHO05D005766 2.7e-30 135.6 91 72.5
FAN15G1199 Fragaria x ananassa HOM05D004883 ORTHO05D005766 3.8e-29 131.7 83 74.7
CAN.G371.3 Capsicum annuum HOM05D004883 ORTHO05D005766 1.6e-27 126.3 124 58.1
Nn5g30317 Nelumbo nucifera HOM05D004883 ORTHO05D005766 1.0e-26 123.6 125 57.6
AagrBONN_evm.TU.Sc2ySwM_344.1976 Anthoceros agrestis HOM05D004883 ORTHO05D005766 4.0e-26 121.7 119 49.6
Actinidia29871 Actinidia chinensis HOM05D004883 ORTHO05D005766 1.2e-25 120.2 62 93.5
BcaC01g04518 Brassica carinata HOM05D004883 ORTHO05D005766 2.0e-25 119.4 82 75.6
EL10Ac4g09184 Beta vulgaris HOM05D004883 ORTHO05D005766 2.6e-25 119.0 114 56.1
EL10Ac7g17187 Beta vulgaris HOM05D004883 ORTHO05D005766 5.8e-25 117.9 83 71.1
BolC9t59992H Brassica oleracea HOM05D004883 ORTHO05D005766 6.4e-24 114.4 100 61.0
Lj4A58G20 Lonicera japonica HOM05D000983 ORTHO05D005766 3.5e-22 108.6 60 85.0
Os01g0357200 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 4.6e-22 108.2 83 65.1
Gohir.A06G018633 Gossypium hirsutum HOM05D004883 ORTHO05D005766 6.0e-22 107.8 94 58.5
BolC1t02723H Brassica oleracea HOM05D004883 ORTHO05D005766 8.6e-21 104.0 67 73.1
unitig_32.g11126 Utricularia gibba HOM05D004883 ORTHO05D005766 2.6e-17 92.4 63 69.8
RcHm_v2.0_Chr5g0032801 Rosa chinensis HOM05D004883 ORTHO05D005766 1.4e-15 86.7 78 59.0
C01p27920 Brassica napus HOM05D004883 ORTHO05D005766 2.7e-14 82.4 103 49.5
C09p72490 Brassica napus HOM05D004883 ORTHO05D005766 3.6e-11 72.0 43 76.7
PRCOL_00003255 Prasinoderma coloniale HOM05D004883 ORTHO05D005766 6.8e-10 67.8 113 35.4
MELO3C033382.2 Cucumis melo HOM05D004883 ORTHO05D005766 5.4e-07 58.2 41 63.4
CBR_g37451 Chara braunii HOM05D004883 ORTHO05D005766 2.7e-06 55.8 54 57.4
Haze_26844 Corylus avellana HOM05D005792 ORTHO05D007171 2.7e-06 55.8 112 35.7
Cre14.g633550 Chlamydomonas reinhardtii HOM05D004883 ORTHO05D005766 6.0e-06 54.7 110 35.5


User provided reference genes

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