Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.12999 Avicennia marina HOM05D005375 ORTHO05D006598 9.4e-232 806.6 435 100.0
MSTRG.6961 Avicennia marina HOM05D005375 ORTHO05D006598 7.8e-154 547.7 419 73.0
SGA_v2.0_scaffold8G04388 Striga asiatica HOM05D005375 ORTHO05D006598 3.6e-151 538.9 421 69.1
Cc05_g14340 Coffea canephora HOM05D005375 ORTHO05D006598 9.9e-141 504.2 449 65.9
Nitab4.5_0004445g0070 Nicotiana tabacum HOM05D005375 ORTHO05D006598 8.7e-137 491.1 424 63.7
Nitab4.5_0005078g0020 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.6e-135 486.9 424 65.6
Migut.M01705 Erythranthe guttata HOM05D005375 ORTHO05D006598 1.8e-134 483.4 428 65.7
CSS0031566 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 5.3e-134 481.9 457 61.5
Thecc.07G027900 Theobroma cacao HOM05D005375 ORTHO05D006598 4.9e-132 475.3 435 63.2
PGSC0003DMG400022298 Solanum tuberosum HOM05D005375 ORTHO05D006598 8.4e-132 474.6 433 61.2
Dinv40796 Davidia involucrata HOM05D005375 ORTHO05D006598 4.2e-131 472.2 457 65.6
CSS0047507 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 5.5e-131 471.9 420 63.8
Dinv22229 Davidia involucrata HOM05D005375 ORTHO05D006598 5.5e-131 471.9 422 68.2
Nitab4.5_0001160g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.2e-130 470.7 437 59.3
CSS0021148 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 1.8e-129 466.8 435 62.3
Migut.H01791 Erythranthe guttata HOM05D005375 ORTHO05D006598 1.8e-129 466.8 419 63.5
vmacro22307 Vaccinium macrocarpon HOM05D005375 ORTHO05D006598 1.5e-128 463.8 477 62.3
Nitab4.5_0007749g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 4.3e-128 462.2 437 60.0
CAN.G337.55 Capsicum annuum HOM05D005375 ORTHO05D006598 2.8e-127 459.5 457 58.6
Rhsim06G0223700 Rhododendron simsii HOM05D005375 ORTHO05D006598 2.8e-127 459.5 422 62.3
Manes.03G136300 Manihot esculenta HOM05D005375 ORTHO05D006598 4.8e-127 458.8 438 58.7
Cfa020276 Carpinus fangiana HOM05D005375 ORTHO05D006598 4.5e-125 452.2 463 56.8
TWI38G0072 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 2.2e-124 449.9 446 59.2
Ciclev10008309m.g Citrus clementina HOM05D005375 ORTHO05D006598 6.5e-124 448.4 448 58.3
TAR629G0374 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.9e-123 446.8 421 64.6
Gorai.009G443800 Gossypium raimondii HOM05D005375 ORTHO05D006598 7.1e-123 444.9 456 57.9
Gohir.A04G011700 Gossypium hirsutum HOM05D005375 ORTHO05D006598 9.3e-123 444.5 456 58.1
CsaV3_3G004730 Cucumis sativus L. HOM05D005375 ORTHO05D006598 6.1e-122 441.8 435 59.3
HanXRQChr13g0408271 Helianthus annuus HOM05D005375 ORTHO05D006598 6.1e-122 441.8 458 56.3
Gohir.D05G374900 Gossypium hirsutum HOM05D005375 ORTHO05D006598 7.9e-122 441.4 456 57.5
Duzib170G0122 Durio zibethinus HOM05D005375 ORTHO05D006598 1.3e-121 440.7 433 61.4
MD03G1294800 Malus domestica HOM05D005375 ORTHO05D006598 2.3e-121 439.9 457 58.9
ClCG10G005050 Citrullus lanatus HOM05D005375 ORTHO05D006598 5.1e-121 438.7 461 57.9
ECA240G0086 Erigeron canadensis HOM05D005375 ORTHO05D006598 7.4e-120 434.9 447 57.0
AUR62015884 Chenopodium quinoa HOM05D005375 ORTHO05D006598 1.1e-118 431.0 460 55.9
TAR627G0180 Trochodendron aralioides HOM05D005375 ORTHO05D006598 2.4e-118 429.9 451 55.9
Sopen07g033190 Solanum pennellii HOM05D005375 ORTHO05D006598 4.1e-118 429.1 434 61.3
Prupe.8G266900 Prunus persica HOM05D005375 ORTHO05D006598 6.9e-118 428.3 452 59.5
AUR62020339 Chenopodium quinoa HOM05D005375 ORTHO05D006598 9.0e-118 427.9 460 55.7
Peaxi162Scf00235g00721 Petunia axillaris HOM05D005375 ORTHO05D006598 5.9e-117 425.2 464 58.6
RcHm_v2.0_Chr7g0241441 Rosa chinensis HOM05D005375 ORTHO05D006598 2.9e-116 422.9 479 57.8
Aqoxy1G04123 Aquilegia oxysepala HOM05D005375 ORTHO05D006598 5.0e-116 422.2 456 54.6
MD00G1179000 Malus domestica HOM05D005375 ORTHO05D006598 5.5e-115 418.7 459 54.9
QL08p007584 Quercus lobata HOM05D005375 ORTHO05D006598 9.4e-115 417.9 455 54.7
Oeu054311.1 Olea europaea HOM05D005375 ORTHO05D006598 1.2e-114 417.5 431 61.7
EL10Ac4g07689 Beta vulgaris HOM05D005375 ORTHO05D006598 1.6e-114 417.2 453 58.7
Duzib268G0742 Durio zibethinus HOM05D005375 ORTHO05D006598 2.1e-114 416.8 436 62.4
Atru.chr2.3534 Acer truncatum HOM05D005375 ORTHO05D006598 1.0e-113 414.5 455 54.3
FAN18G4382 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.8e-113 413.7 490 52.7
Potri.011G082000 Populus trichocarpa HOM05D005375 ORTHO05D006598 2.3e-113 413.3 441 54.6
FAN04G2161 Fragaria x ananassa HOM05D005375 ORTHO05D006598 3.0e-113 412.9 494 51.4
FAN13G1970 Fragaria x ananassa HOM05D005375 ORTHO05D006598 3.0e-113 412.9 489 51.5
FvH4_5g39180 Fragaria vesca HOM05D005375 ORTHO05D006598 3.9e-113 412.5 490 52.4
unitig_747.g21591 Utricularia gibba HOM05D005375 ORTHO05D006598 8.8e-113 411.4 440 55.7
FAN08G1518 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.1e-112 411.0 490 52.4
Solyc07g064980.3 Solanum lycopersicum HOM05D005375 ORTHO05D006598 1.1e-112 411.0 434 56.0
Hma1.2p1_1332F.1_g276150 Hydrangea macrophylla HOM05D005375 ORTHO05D006598 2.5e-112 409.8 444 60.6
Atru.chr2.3553 Acer truncatum HOM05D005375 ORTHO05D006598 3.3e-112 409.5 448 54.7
MELO3C014172.2 Cucumis melo HOM05D005375 ORTHO05D006598 3.3e-112 409.5 439 55.6
HanXRQChr03g0076881 Helianthus annuus HOM05D005375 ORTHO05D006598 9.7e-112 407.9 440 56.8
LjContig00272g0009776 Lotus japonicus HOM05D005375 ORTHO05D006598 9.7e-112 407.9 480 53.5
Phvul.008G272700 Phaseolus vulgaris HOM05D005375 ORTHO05D006598 2.2e-111 406.8 494 50.6
Glyma.14G018200 Glycine max HOM05D005375 ORTHO05D006598 6.3e-111 405.2 503 50.5
Gohir.A01G084800 Gossypium hirsutum HOM05D005375 ORTHO05D006598 6.9e-110 401.7 435 60.7
Eucgr.F03508 Eucalyptus grandis HOM05D005375 ORTHO05D006598 9.1e-110 401.4 498 54.8
Gorai.002G093900 Gossypium raimondii HOM05D005375 ORTHO05D006598 1.2e-109 401.0 433 59.6
Sabra11G0065600 Salix brachista HOM05D005375 ORTHO05D006598 1.2e-109 401.0 476 54.0
VMungo0647G1984 Vigna mungo HOM05D005375 ORTHO05D006598 2.0e-109 400.2 502 50.6
Gohir.D01G071200 Gossypium hirsutum HOM05D005375 ORTHO05D006598 4.5e-109 399.1 435 60.9
Ca_06349_v3 Cicer arietinum L. HOM05D005375 ORTHO05D006598 8.5e-108 394.8 422 55.2
Glyma.02G295200 Glycine max HOM05D005375 ORTHO05D006598 7.2e-107 391.7 485 50.5
Sp7g24730 Schrenkiella parvula HOM05D005375 ORTHO05D006598 2.7e-106 389.8 435 57.0
DCAR_022591 Daucus carota HOM05D005375 ORTHO05D006598 4.7e-106 389.0 449 51.4
Carub.0007s1409 Capsella rubella HOM05D005375 ORTHO05D006598 1.0e-105 387.9 445 55.3
AL7G26080 Arabidopsis lyrata HOM05D005375 ORTHO05D006598 1.4e-105 387.5 430 56.3
PSO210G0227 Papaver somniferum HOM05D005375 ORTHO05D006598 3.0e-105 386.3 477 49.3
Lj6g0028194 Lotus japonicus HOM05D005375 ORTHO05D006598 5.1e-105 385.6 474 52.3
Psat2g009920 Pisum sativum HOM05D005375 ORTHO05D006598 6.7e-105 385.2 515 48.0
BolC1t02212H Brassica oleracea HOM05D005375 ORTHO05D006598 2.0e-104 383.6 433 56.1
Lj1C881T5 Lonicera japonica HOM05D005375 ORTHO05D006598 2.0e-104 383.6 404 56.4
PSO302G0025 Papaver somniferum HOM05D005375 ORTHO05D006598 2.0e-104 383.6 476 49.4
CiPaw.11G194800 Carya illinoinensis HOM05D005375 ORTHO05D006598 3.3e-104 382.9 482 50.8
AT4G26750 Arabidopsis thaliana HOM05D005375 ORTHO05D006598 7.4e-104 381.7 438 53.0
Lsat_1_v5_gn_9_90720 Lactuca sativa HOM05D005375 ORTHO05D006598 1.3e-103 380.9 462 54.1
Aa31LG5G12180 Aethionema arabicum HOM05D005375 ORTHO05D006598 7.0e-102 375.2 458 52.4
Actinidia05060 Actinidia chinensis HOM05D005375 ORTHO05D006598 9.1e-102 374.8 413 57.9
TPR.G35360 Trifolium pratense HOM05D005375 ORTHO05D006598 9.1e-102 374.8 522 45.6
Thhalv10025139m.g Eutrema salsugineum HOM05D005375 ORTHO05D006598 1.3e-100 370.9 459 54.5
THA.LOC104811633 Tarenaya hassleriana HOM05D005375 ORTHO05D006598 1.3e-100 370.9 423 59.6
CARHR234370 Cardamine hirsuta HOM05D005375 ORTHO05D006598 5.0e-100 369.0 452 53.5
CANSAT11G2127 Cannabis sativa HOM05D005375 ORTHO05D006598 1.2e-98 364.4 464 52.4
COL.COLO4_09738 Corchorus olitorius HOM05D005375 ORTHO05D006598 1.8e-97 360.5 406 55.9
Os06g0308800 Oryza sativa ssp. japonica HOM05D005375 ORTHO05D006598 3.3e-96 356.3 491 46.2
BraA01t01755Z Brassica rapa HOM05D000504 ORTHO05D000403 4.4e-96 355.9 433 53.6
PGR031G3708 Punica granatum HOM05D005375 ORTHO05D006598 1.3e-95 354.4 442 52.7
ATR1101G026 Amborella trichopoda HOM05D005375 ORTHO05D006598 6.3e-95 352.1 427 52.2
Medtr5g093880 Medicago truncatula HOM05D005375 ORTHO05D006598 3.1e-94 349.7 500 51.2
CDE04G3304 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 1.6e-93 347.4 441 48.1
CDE07G0643 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 3.5e-93 346.3 435 49.9
C01p22820 Brassica napus HOM05D000504 ORTHO05D006598 1.7e-92 344.0 433 52.9
Sed0014032 Sechium edule HOM05D005375 ORTHO05D006598 2.9e-92 343.2 393 60.8
A01p18000 Brassica napus HOM05D000504 ORTHO05D000403 5.0e-92 342.4 434 52.1
Lalb_Chr04g0248131 Lupinus albus HOM05D005375 ORTHO05D006598 5.5e-91 339.0 508 50.2
SEGI_32868 Sequoiadendron giganteum HOM05D005375 ORTHO05D006598 4.7e-90 335.9 500 45.2
CSS0025851 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 1.3e-87 327.8 387 50.6
Nn1g07350 Nelumbo nucifera HOM05D005375 ORTHO05D006598 5.4e-86 322.4 487 49.7
GSVIVG01037729001 Vitis vinifera HOM05D005375 ORTHO05D006598 5.5e-83 312.4 195 80.5
SMO271G0101 Selaginella moellendorffii HOM05D005375 ORTHO05D006598 2.0e-80 303.9 435 48.0
Zm00001eb281230 Zea mays HOM05D005375 ORTHO05D006598 1.3e-79 301.2 443 44.7
Lalb_Chr00c48g0412951 Lupinus albus HOM05D005375 ORTHO05D006598 5.4e-78 295.8 174 83.9
Lj8A173T72 Lonicera japonica HOM05D005375 ORTHO05D006598 7.0e-78 295.4 410 47.8
Cpa.g.sc284.2 Carica papaya HOM05D005375 ORTHO05D006598 1.6e-77 294.3 171 85.4
HPP92_015778 Vanilla planifolia HOM05D005375 ORTHO05D006598 7.7e-77 292.0 274 61.3
Pp3c12_1420 Physcomitrium patens HOM05D005375 ORTHO05D006598 6.6e-76 288.9 462 43.3
Mapoly0043s0080 Marchantia polymorpha HOM05D005375 ORTHO05D006598 2.5e-75 287.0 507 40.2
TAR624G1027 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.8e-73 280.8 190 75.3
DCAR_016648 Daucus carota HOM05D005375 ORTHO05D006598 8.9e-73 278.5 383 47.0
Sc16g0005720 Simmondsia chinensis HOM05D005375 ORTHO05D006598 2.0e-72 277.3 318 60.1
BcaC09g52262 Brassica carinata HOM05D005375 ORTHO05D006598 1.4e-65 254.6 364 49.7
Haze_09747 Corylus avellana HOM05D005375 ORTHO05D006598 2.3e-65 253.8 517 38.7
PGR031G2801 Punica granatum HOM05D005375 ORTHO05D006598 3.4e-64 250.0 358 46.4
SHI26566 Sapria himalayana HOM05D005375 ORTHO05D006598 1.2e-56 224.9 503 37.2
TWI39G0687 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 2.6e-56 223.8 129 84.5
Actinidia32285 Actinidia chinensis HOM05D005375 ORTHO05D006598 1.6e-53 214.5 277 49.5
Lalb_Chr00c48g0413001 Lupinus albus HOM05D005375 ORTHO05D006598 8.1e-50 202.2 171 64.3
AagrBONN_evm.TU.Sc2ySwM_368.1760 Anthoceros agrestis HOM05D005375 ORTHO05D006598 3.1e-49 200.3 398 37.7
CBR_g50394 Chara braunii HOM05D005375 ORTHO05D006598 5.4e-38 162.9 395 36.7
Cre03.g145227 Chlamydomonas reinhardtii HOM05D005375 ORTHO05D006598 1.2e-37 161.8 157 52.9
Nn1g03334 Nelumbo nucifera HOM05D005375 ORTHO05D006598 3.5e-37 160.2 387 34.6
PRCOL_00004002 Prasinoderma coloniale HOM05D005375 ORTHO05D006598 4.3e-35 153.3 210 42.4
Actinidia37374 Actinidia chinensis HOM05D005375 ORTHO05D006598 2.6e-32 144.1 318 36.5
MCO03G124 Micromonas commoda HOM05D005375 ORTHO05D006598 1.4e-25 121.7 258 33.3
Ah.06g182230 Amaranthus hybridus HOM05D005375 ORTHO05D006598 1.3e-23 115.2 65 86.2
Actinidia20957 Actinidia chinensis HOM05D005375 ORTHO05D006598 1.0e-20 105.5 96 56.2
Zm00001eb381490 Zea mays HOM05D005375 ORTHO05D006598 5.1e-20 103.2 123 48.8
TAR624G1433 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.1e-19 102.1 116 50.9
Hund23196 Selenicereus undatus HOM05D005375 ORTHO05D006598 2.5e-19 100.9 97 58.8
CAN.G396.4 Capsicum annuum HOM05D005375 ORTHO05D006598 2.0e-16 91.3 124 43.5
CAN.G4023.1 Capsicum annuum HOM05D005375 ORTHO05D006598 7.6e-16 89.4 102 48.0
MCO09G798 Micromonas commoda HOM05D005375 ORTHO05D006598 3.8e-15 87.0 245 32.7
C08p09960 Brassica napus HOM05D000504 ORTHO05D000403 1.4e-14 85.1 62 69.4
BolC8t48673H Brassica oleracea HOM05D000504 ORTHO05D000403 1.4e-14 85.1 62 69.4
CAN.G396.14 Capsicum annuum HOM05D005375 ORTHO05D006598 7.1e-14 82.8 73 63.0
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 1.3e-12 78.6 56 66.1
EL10Ac4g10331 Beta vulgaris HOM05D000230 ORTHO05D000176 1.0e-07 62.4 133 30.8
AUR62000045 Chenopodium quinoa HOM05D000230 ORTHO05D000176 1.0e-07 62.4 133 30.8
AUR62019215 Chenopodium quinoa HOM05D000230 ORTHO05D000176 1.0e-07 62.4 133 30.8
ATR0568G101 Amborella trichopoda HOM05D000230 ORTHO05D000176 1.3e-07 62.0 169 25.4
Sc16g0011980 Simmondsia chinensis HOM05D000230 ORTHO05D000176 2.2e-07 61.2 130 30.0
Ah.06g193150 Amaranthus hybridus HOM05D000230 ORTHO05D000176 2.9e-07 60.8 133 30.8
BcaC07g38248 Brassica carinata HOM05D005375 ORTHO05D006598 3.8e-07 60.5 90 42.2
Hund21655 Selenicereus undatus HOM05D000230 ORTHO05D000176 3.8e-07 60.5 133 30.1
FvH4_3g44290 Fragaria vesca HOM05D000230 ORTHO05D000176 8.4e-07 59.3 133 29.3
FAN11G0064 Fragaria x ananassa HOM05D000230 ORTHO05D000176 8.4e-07 59.3 133 29.3
FAN21G0442 Fragaria x ananassa HOM05D000230 ORTHO05D000176 8.4e-07 59.3 126 30.2
FAN21G1634 Fragaria x ananassa HOM05D000230 ORTHO05D000176 8.4e-07 59.3 133 29.3
FAN25G2157 Fragaria x ananassa HOM05D000230 ORTHO05D000176 8.4e-07 59.3 133 29.3
THA.LOC104803323 Tarenaya hassleriana HOM05D000230 ORTHO05D000176 1.4e-06 58.5 124 27.4
Aa31LG10G13570 Aethionema arabicum HOM05D000230 ORTHO05D000176 2.5e-06 57.8 124 27.4
AT3G59100 Arabidopsis thaliana HOM05D000230 ORTHO05D000176 2.5e-06 57.8 124 27.4
Carub.0005s2586 Capsella rubella HOM05D000230 ORTHO05D000176 2.5e-06 57.8 124 27.4
Sp5g03890 Schrenkiella parvula HOM05D000230 ORTHO05D000176 2.5e-06 57.8 124 27.4
vmacro22285 Vaccinium macrocarpon HOM05D000230 ORTHO05D000176 2.5e-06 57.8 132 29.5
BcaC08g44958 Brassica carinata HOM05D000230 ORTHO05D000176 3.2e-06 57.4 124 27.4
C06p25880 Brassica napus HOM05D000230 ORTHO05D000176 3.2e-06 57.4 124 27.4
BolC6t37750H Brassica oleracea HOM05D000230 ORTHO05D000176 3.2e-06 57.4 124 27.4
CiPaw.13G170400 Carya illinoinensis HOM05D000230 ORTHO05D000176 3.2e-06 57.4 145 27.6
Thhalv10005734m.g Eutrema salsugineum HOM05D000230 ORTHO05D000176 3.2e-06 57.4 124 27.4
Rhsim01G0186600 Rhododendron simsii HOM05D000230 ORTHO05D000176 3.2e-06 57.4 136 28.7
RcHm_v2.0_Chr5g0080661 Rosa chinensis HOM05D000230 ORTHO05D000176 3.2e-06 57.4 132 28.8
AL5G40990 Arabidopsis lyrata HOM05D000230 ORTHO05D000176 4.2e-06 57.0 124 27.4
CAN.G129.45 Capsicum annuum HOM05D000230 ORTHO05D000176 5.5e-06 56.6 130 30.0
Dinv08610 Davidia involucrata HOM05D000230 ORTHO05D000176 5.5e-06 56.6 127 26.8
Solyc01g073750.4 Solanum lycopersicum HOM05D000230 ORTHO05D000176 5.5e-06 56.6 130 30.0
Sopen01g033360 Solanum pennellii HOM05D000230 ORTHO05D000176 5.5e-06 56.6 130 30.0
A07p24480 Brassica napus HOM05D000230 ORTHO05D000176 7.2e-06 56.2 124 27.4
BraA07t30092Z Brassica rapa HOM05D000230 ORTHO05D000176 7.2e-06 56.2 124 27.4
CSS0011529 Camellia sinensis var. sinensis HOM05D000230 ORTHO05D000176 7.2e-06 56.2 132 28.8
Cfa009643 Carpinus fangiana HOM05D000230 ORTHO05D000176 7.2e-06 56.2 140 27.9
PSO541G0069 Papaver somniferum HOM05D000230 ORTHO05D000176 7.2e-06 56.2 141 26.2
unitig_22.g6214 Utricularia gibba HOM05D000230 ORTHO05D000176 7.2e-06 56.2 143 26.6
BcaB02g07484 Brassica carinata HOM05D000230 ORTHO05D000176 9.3e-06 55.8 124 27.4
Dinv43496 Davidia involucrata HOM05D000230 ORTHO05D000176 9.3e-06 55.8 130 29.2
PSO675G5859 Papaver somniferum HOM05D000230 ORTHO05D000176 9.3e-06 55.8 141 26.2


User provided reference genes

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