Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.12743 Avicennia marina HOM05D005229 ORTHO05D006378 1.1e-130 469.9 241 100.0
MSTRG.17960 Avicennia marina HOM05D005229 ORTHO05D006378 2.3e-110 402.5 219 93.2
Oeu025298.1 Olea europaea HOM05D005229 ORTHO05D006378 1.7e-105 386.3 219 88.1
SGA_v2.0_scaffold29G12061 Striga asiatica HOM05D005229 ORTHO05D006378 2.2e-105 386.0 219 88.1
Oeu013526.1 Olea europaea HOM05D005229 ORTHO05D006378 1.1e-104 383.6 219 87.2
SalBow3G3798 Salvia bowleyana HOM05D005229 ORTHO05D006378 9.2e-104 380.6 220 87.7
TWI36G1337 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 9.2e-104 380.6 227 86.3
HanXRQChr12g0363961 Helianthus annuus HOM05D005229 ORTHO05D006378 2.0e-103 379.4 219 88.1
ECA236G3288 Erigeron canadensis HOM05D005229 ORTHO05D006378 2.7e-103 379.0 219 86.8
TWI18G1321 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 2.7e-103 379.0 219 87.7
unitig_60.g25573 Utricularia gibba HOM05D005229 ORTHO05D006378 1.0e-102 377.1 219 86.8
CAN.G874.38 Capsicum annuum HOM05D005229 ORTHO05D006378 8.6e-102 374.0 221 85.5
CAN.G874.39 Capsicum annuum HOM05D005229 ORTHO05D006378 8.6e-102 374.0 221 85.5
Peaxi162Scf00841g00210 Petunia axillaris HOM05D005229 ORTHO05D006378 8.6e-102 374.0 220 84.1
unitig_0.g420 Utricularia gibba HOM05D005229 ORTHO05D006378 8.6e-102 374.0 220 87.7
DCAR_018610 Daucus carota HOM05D005229 ORTHO05D006378 3.3e-101 372.1 219 85.4
TAR365G0963 Trochodendron aralioides HOM05D005229 ORTHO05D006378 3.3e-101 372.1 216 86.1
Thecc.01G207800 Theobroma cacao HOM05D005229 ORTHO05D006378 7.3e-101 370.9 219 84.0
Cc01_g15890 Coffea canephora HOM05D005229 ORTHO05D006378 1.6e-100 369.8 220 85.5
Nn1g09761 Nelumbo nucifera HOM05D005229 ORTHO05D006378 1.6e-100 369.8 216 85.6
PGR083G1330 Punica granatum HOM05D005229 ORTHO05D006378 2.1e-100 369.4 221 84.2
Cpa.g.sc8.42 Carica papaya HOM05D005229 ORTHO05D006378 4.7e-100 368.2 219 83.6
Lsat_1_v5_gn_8_98481 Lactuca sativa HOM05D005229 ORTHO05D006378 6.2e-100 367.9 219 83.6
Potri.002G239700 Populus trichocarpa HOM05D005229 ORTHO05D006378 1.4e-99 366.7 219 84.9
Migut.D00776 Erythranthe guttata HOM05D005229 ORTHO05D006378 1.8e-99 366.3 218 83.5
DCAR_012704 Daucus carota HOM05D005229 ORTHO05D006378 2.3e-99 365.9 218 83.5
COL.COLO4_07353 Corchorus olitorius HOM05D005229 ORTHO05D006378 3.1e-99 365.5 220 83.6
PGSC0003DMG400027671 Solanum tuberosum HOM05D005229 ORTHO05D006378 4.0e-99 365.2 221 82.8
MBI07_g06134_MAGBIO Magnolia biondii HOM05D005229 ORTHO05D006378 5.2e-99 364.8 220 84.5
Solyc06g082950.4 Solanum lycopersicum HOM05D005229 ORTHO05D006378 5.2e-99 364.8 241 77.6
PGSC0003DMG400027672 Solanum tuberosum HOM05D005229 ORTHO05D006378 5.2e-99 364.8 221 82.8
Actinidia34531 Actinidia chinensis HOM05D005229 ORTHO05D006378 6.8e-99 364.4 221 84.6
Sopen06g034330 Solanum pennellii HOM05D005229 ORTHO05D006378 6.8e-99 364.4 221 82.8
THA.LOC104808816 Tarenaya hassleriana HOM05D005229 ORTHO05D006378 8.9e-99 364.0 220 83.2
QL01p048658 Quercus lobata HOM05D005229 ORTHO05D006378 1.2e-98 363.6 218 83.9
Solyc06g082940.3 Solanum lycopersicum HOM05D005229 ORTHO05D006378 1.2e-98 363.6 221 82.8
Sopen06g034340 Solanum pennellii HOM05D005229 ORTHO05D006378 1.2e-98 363.6 221 82.4
Ciclev10016637m.g Citrus clementina HOM05D005229 ORTHO05D006378 1.5e-98 363.2 219 83.1
CiPaw.07G079800 Carya illinoinensis HOM05D005229 ORTHO05D006378 2.6e-98 362.5 220 84.5
Sabra14G0134400 Salix brachista HOM05D005229 ORTHO05D006378 3.4e-98 362.1 219 84.0
Sp7g09420 Schrenkiella parvula HOM05D005229 ORTHO05D006378 5.8e-98 361.3 220 82.3
Atru.chr6.3527 Acer truncatum HOM05D005229 ORTHO05D006378 2.2e-97 359.4 220 83.2
BcaC02g09463 Brassica carinata HOM05D005229 ORTHO05D006378 2.9e-97 359.0 220 81.8
C04p43050 Brassica napus HOM05D005229 ORTHO05D006378 2.9e-97 359.0 220 81.8
BolC4t25883H Brassica oleracea HOM05D005229 ORTHO05D006378 2.9e-97 359.0 220 81.8
Rhsim01G0247800 Rhododendron simsii HOM05D005229 ORTHO05D006378 6.4e-97 357.8 221 81.9
CDE06G2797 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 1.1e-96 357.1 218 82.1
Aqoxy2G04070 Aquilegia oxysepala HOM05D005229 ORTHO05D006378 1.4e-96 356.7 219 82.2
A04p09140 Brassica napus HOM05D005229 ORTHO05D006378 1.4e-96 356.7 220 81.4
Sabra02G0182500 Salix brachista HOM05D005229 ORTHO05D006378 1.4e-96 356.7 219 83.1
Aa31LG9G5690 Aethionema arabicum HOM05D005229 ORTHO05D006378 3.2e-96 355.5 220 80.0
BcaB04g17739 Brassica carinata HOM05D005229 ORTHO05D006378 3.2e-96 355.5 220 80.9
Manes.12G055600 Manihot esculenta HOM05D005229 ORTHO05D006378 3.2e-96 355.5 216 84.3
Potri.014G175600 Populus trichocarpa HOM05D005229 ORTHO05D006378 3.2e-96 355.5 219 81.7
Thhalv10026195m.g Eutrema salsugineum HOM05D005229 ORTHO05D006378 4.1e-96 355.1 220 80.9
Haze_04550 Corylus avellana HOM05D005229 ORTHO05D006378 7.0e-96 354.4 216 81.5
FAN02G4095 Fragaria x ananassa HOM05D005229 ORTHO05D006378 9.2e-96 354.0 216 83.3
FAN05G0704 Fragaria x ananassa HOM05D005229 ORTHO05D006378 9.2e-96 354.0 216 82.9
Eucgr.K02362 Eucalyptus grandis HOM05D005229 ORTHO05D006378 1.2e-95 353.6 230 79.6
vmacro14690 Vaccinium macrocarpon HOM05D005229 ORTHO05D006378 1.2e-95 353.6 220 81.4
AL9U11740 Arabidopsis lyrata HOM05D005229 ORTHO05D006378 2.0e-95 352.8 220 80.9
Cfa006268 Carpinus fangiana HOM05D005229 ORTHO05D006378 2.0e-95 352.8 216 81.0
CARHR218150 Cardamine hirsuta HOM05D005229 ORTHO05D006378 2.7e-95 352.4 220 80.5
Lj2P1112T20 Lonicera japonica HOM05D005229 ORTHO05D006378 2.7e-95 352.4 215 84.2
BcaB03g16154 Brassica carinata HOM05D005229 ORTHO05D006378 3.5e-95 352.1 220 80.5
A08p07360 Brassica napus HOM05D005229 ORTHO05D006378 3.5e-95 352.1 220 80.0
BraA08t32752Z Brassica rapa HOM05D005229 ORTHO05D006378 3.5e-95 352.1 220 80.0
Gohir.D07G168100 Gossypium hirsutum HOM05D005229 ORTHO05D006378 3.5e-95 352.1 220 80.5
Gohir.A07G160500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 4.6e-95 351.7 220 80.5
C08p09050 Brassica napus HOM05D005229 ORTHO05D006378 6.0e-95 351.3 220 80.0
BcaC07g37428 Brassica carinata HOM05D005229 ORTHO05D006378 7.8e-95 350.9 220 79.5
AUR62000314 Chenopodium quinoa HOM05D005229 ORTHO05D006378 7.8e-95 350.9 220 80.9
Gorai.001G101200 Gossypium raimondii HOM05D005229 ORTHO05D006378 7.8e-95 350.9 220 80.0
Prupe.6G361000 Prunus persica HOM05D005229 ORTHO05D006378 7.8e-95 350.9 217 80.2
Sed0023204 Sechium edule HOM05D005229 ORTHO05D006378 7.8e-95 350.9 219 80.8
AUR62006659 Chenopodium quinoa HOM05D005229 ORTHO05D006378 1.0e-94 350.5 220 81.4
Duzib138G0242 Durio zibethinus HOM05D005229 ORTHO05D006378 1.0e-94 350.5 220 80.5
ClCG11G010740 Citrullus lanatus HOM05D005229 ORTHO05D006378 1.3e-94 350.1 219 80.8
MELO3C008731.2 Cucumis melo HOM05D005229 ORTHO05D006378 1.3e-94 350.1 219 80.8
FvH4_6g00530 Fragaria vesca HOM05D005229 ORTHO05D006378 1.3e-94 350.1 216 81.9
FAN09G4314 Fragaria x ananassa HOM05D005229 ORTHO05D006378 1.3e-94 350.1 216 81.9
CSS0044510 Camellia sinensis var. sinensis HOM05D005229 ORTHO05D006378 2.3e-94 349.4 225 80.9
Gohir.A07G089500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 2.3e-94 349.4 220 81.4
RcHm_v2.0_Chr3g0447921 Rosa chinensis HOM05D005229 ORTHO05D006378 2.3e-94 349.4 216 81.5
AT4G12800 Arabidopsis thaliana HOM05D005229 ORTHO05D006378 3.0e-94 349.0 220 79.5
arahy.Tifrunner.gnm1.ann1.MF538D Arachis hypogaea HOM05D005229 ORTHO05D006378 3.9e-94 348.6 217 81.6
BolC8t47751H Brassica oleracea HOM05D005229 ORTHO05D006378 5.0e-94 348.2 220 79.1
CsaV3_2G009680 Cucumis sativus L. HOM05D005229 ORTHO05D006378 5.0e-94 348.2 219 79.9
FAN14G1738 Fragaria x ananassa HOM05D005229 ORTHO05D006378 5.0e-94 348.2 216 81.5
Gohir.D07G094300 Gossypium hirsutum HOM05D005229 ORTHO05D006378 5.0e-94 348.2 220 80.0
Lj1g0022024 Lotus japonicus HOM05D005229 ORTHO05D006378 5.0e-94 348.2 218 82.1
Thecc.05G199500 Theobroma cacao HOM05D005229 ORTHO05D006378 5.0e-94 348.2 216 80.6
Carub.0007s3001 Capsella rubella HOM05D005229 ORTHO05D006378 6.6e-94 347.8 220 79.1
Gorai.N002100 Gossypium raimondii HOM05D005229 ORTHO05D006378 8.6e-94 347.4 220 80.9
arahy.Tifrunner.gnm1.ann1.18YQBF Arachis hypogaea HOM05D005229 ORTHO05D006378 1.5e-93 346.7 217 81.1
VMungo1383G0609 Vigna mungo HOM05D005229 ORTHO05D006378 1.5e-93 346.7 220 80.5
EL10Ac4g09972 Beta vulgaris HOM05D005229 ORTHO05D006378 3.3e-93 345.5 220 80.9
Lalb_Chr01g0020361 Lupinus albus HOM05D005229 ORTHO05D006378 3.3e-93 345.5 209 82.8
Lalb_Chr19g0127611 Lupinus albus HOM05D005229 ORTHO05D006378 3.3e-93 345.5 217 80.2
GSVIVG01019114001 Vitis vinifera HOM05D005229 ORTHO05D006378 3.3e-93 345.5 223 81.6
Glyma.09G250800 Glycine max HOM05D005229 ORTHO05D006378 5.6e-93 344.7 217 81.1
Psat3g138440 Pisum sativum HOM05D005229 ORTHO05D006378 5.6e-93 344.7 217 79.7
Ca_07979_v3 Cicer arietinum L. HOM05D005229 ORTHO05D006378 7.3e-93 344.4 217 80.2
HanXRQChr08g0231801 Helianthus annuus HOM05D005229 ORTHO05D006378 7.3e-93 344.4 214 82.2
Ah.04g158950 Amaranthus hybridus HOM05D005229 ORTHO05D006378 9.5e-93 344.0 219 79.5
Glyma.18G241700 Glycine max HOM05D005229 ORTHO05D006378 9.5e-93 344.0 217 80.2
Sed0003052 Sechium edule HOM05D005229 ORTHO05D006378 1.2e-92 343.6 219 79.5
Hund07343 Selenicereus undatus HOM05D005229 ORTHO05D006378 1.2e-92 343.6 221 78.7
Phvul.008G054400 Phaseolus vulgaris HOM05D005229 ORTHO05D006378 3.6e-92 342.0 217 79.7
CANSAT54G2118 Cannabis sativa HOM05D005229 ORTHO05D006378 8.9e-91 337.4 217 77.4
MD04G1244400 Malus domestica HOM05D005229 ORTHO05D006378 8.9e-91 337.4 218 77.5
Medtr7g079900 Medicago truncatula HOM05D005229 ORTHO05D006378 8.9e-91 337.4 217 77.9
MD12G1260300 Malus domestica HOM05D005229 ORTHO05D006378 1.5e-90 336.7 218 77.1
ECA247G0242 Erigeron canadensis HOM05D005229 ORTHO05D006378 1.3e-89 333.6 215 80.0
Lsat_1_v5_gn_9_16861 Lactuca sativa HOM05D005229 ORTHO05D006378 1.3e-89 333.6 214 78.5
PSO017G0175 Papaver somniferum HOM05D005229 ORTHO05D006378 1.3e-89 333.6 218 78.9
PSO675G2116 Papaver somniferum HOM05D005229 ORTHO05D006378 1.3e-89 333.6 218 78.9
TPR.G30351 Trifolium pratense HOM05D005229 ORTHO05D006378 1.7e-89 333.2 218 78.4
PGR044G1943 Punica granatum HOM05D005229 ORTHO05D006378 2.9e-89 332.4 219 79.0
Os12g0420400 Oryza sativa ssp. japonica HOM05D005229 ORTHO05D006378 6.4e-89 331.3 220 77.3
Zm00001eb123000 Zea mays HOM05D005229 ORTHO05D006378 4.7e-84 315.1 222 74.8
ATR1147G045 Amborella trichopoda HOM05D005229 ORTHO05D006378 1.4e-83 313.5 224 75.0
CDE06G0966 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 4.9e-81 305.1 193 79.8
Lj1P104T52 Lonicera japonica HOM05D005229 ORTHO05D006378 4.1e-80 302.0 165 87.9
SEGI_02964 Sequoiadendron giganteum HOM05D005229 ORTHO05D006378 1.3e-78 297.0 222 69.8
Zm00001eb336580 Zea mays HOM05D005229 ORTHO05D006378 5.1e-78 295.0 163 85.3
Mapoly0102s0025 Marchantia polymorpha HOM05D005229 ORTHO05D006378 5.4e-72 275.0 223 66.4
Dinv28794 Davidia involucrata HOM05D005229 ORTHO05D006378 3.5e-71 272.3 219 68.5
Nitab4.5_0001348g0130 Nicotiana tabacum HOM05D005229 ORTHO05D006378 4.6e-71 271.9 165 81.2
Pp3c27_2310 Physcomitrium patens HOM05D005229 ORTHO05D006378 6.0e-71 271.6 185 72.4
AagrBONN_evm.TU.Sc2ySwM_362.2854 Anthoceros agrestis HOM05D005229 ORTHO05D006378 1.0e-70 270.8 173 76.9
Pp3c16_5670 Physcomitrium patens HOM05D005229 ORTHO05D006378 2.3e-70 269.6 226 62.8
Pp3c5_4200 Physcomitrium patens HOM05D005229 ORTHO05D006378 3.0e-70 269.2 231 64.9
Nitab4.5_0001348g0080 Nicotiana tabacum HOM05D005229 ORTHO05D006378 1.1e-61 240.7 222 62.2
Peaxi162Scf01242g00025 Petunia axillaris HOM05D005229 ORTHO05D006378 3.1e-59 232.6 220 60.0
CBR_g27900 Chara braunii HOM05D005229 ORTHO05D006378 9.0e-59 231.1 225 56.9
Actinidia23801 Actinidia chinensis HOM05D005229 ORTHO05D006378 2.3e-46 189.9 139 77.0
MCO13G042 Micromonas commoda HOM05D005229 ORTHO05D006378 5.1e-46 188.7 189 53.4
Cre12.g486300 Chlamydomonas reinhardtii HOM05D005229 ORTHO05D006378 8.7e-46 188.0 185 54.6
Hma1.2p1_0171F.1_g075540 Hydrangea macrophylla HOM05D005229 ORTHO05D006378 4.8e-44 182.2 127 70.9
PRCOL_00002830 Prasinoderma coloniale HOM05D005229 ORTHO05D006378 8.2e-44 181.4 150 58.0
MD04G1204600 Malus domestica HOM05D000208 ORTHO05D000130 1.5e-26 124.0 104 68.3
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 2.1e-15 87.0 59 72.9
Actinidia12853 Actinidia chinensis HOM05D001772 ORTHO05D000476 2.1e-15 87.0 59 72.9
Nitab4.5_0014403g0020 Nicotiana tabacum HOM05D005229 ORTHO05D006378 4.5e-10 69.3 57 68.4
Nitab4.5_0007144g0010 Nicotiana tabacum HOM05D005229 ORTHO05D006378 7.7e-10 68.6 58 70.7
Actinidia23346 Actinidia chinensis HOM05D005229 ORTHO05D057974 1.6e-07 60.8 100 41.0


User provided reference genes

Program Settings