Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.12487 Avicennia marina HOM05D004119 ORTHO05D004797 0.0e+00 1314.7 643 100.0
SalBow2G0171 Salvia bowleyana HOM05D004119 ORTHO05D004797 0.0e+00 1096.6 672 81.0
Migut.N02286 Erythranthe guttata HOM05D004119 ORTHO05D004797 4.4e-312 1073.5 647 81.1
SGA_v2.0_scaffold3G01554 Striga asiatica HOM05D004119 ORTHO05D004797 4.4e-312 1073.5 659 81.9
Dinv36315 Davidia involucrata HOM05D004119 ORTHO05D004797 1.5e-299 1032.3 668 77.2
MSTRG.18400 Avicennia marina HOM05D004119 ORTHO05D004797 3.5e-299 1031.2 592 84.1
Atru.chr3.2434 Acer truncatum HOM05D004119 ORTHO05D004797 2.6e-294 1015.0 643 77.8
CiPaw.14G126500 Carya illinoinensis HOM05D004119 ORTHO05D004797 4.4e-294 1014.2 594 81.8
Atru.chr3.2433 Acer truncatum HOM05D004119 ORTHO05D004797 1.7e-293 1012.3 643 77.4
Oeu043306.1 Olea europaea HOM05D004119 ORTHO05D004797 1.4e-292 1009.2 593 82.3
GSVIVG01025352001 Vitis vinifera HOM05D004119 ORTHO05D004797 5.3e-292 1007.3 643 76.0
CsaV3_1G042400 Cucumis sativus L. HOM05D004119 ORTHO05D004797 2.6e-291 1005.0 605 79.2
Duzib168G2002 Durio zibethinus HOM05D004119 ORTHO05D004797 1.0e-290 1003.0 643 76.2
Cc01_g03810 Coffea canephora HOM05D004119 ORTHO05D004797 3.8e-290 1001.1 585 81.4
ClCG03G013650 Citrullus lanatus HOM05D004119 ORTHO05D004797 5.0e-290 1000.7 599 80.0
Thecc.09G219300 Theobroma cacao HOM05D004119 ORTHO05D004797 1.1e-289 999.6 632 77.1
CANSAT54G1702 Cannabis sativa HOM05D004119 ORTHO05D004797 1.9e-289 998.8 654 75.5
MELO3C015675.2 Cucumis melo HOM05D004119 ORTHO05D004797 1.9e-289 998.8 602 79.1
QL01p009105 Quercus lobata HOM05D004119 ORTHO05D004797 2.5e-289 998.4 642 75.4
Hma1.2p1_1169F.1_g263240 Hydrangea macrophylla HOM05D004119 ORTHO05D004797 4.2e-289 997.7 670 74.5
Peaxi162Scf00403g00212 Petunia axillaris HOM05D004119 ORTHO05D004797 4.2e-289 997.7 642 75.7
Prupe.6G017800 Prunus persica HOM05D004119 ORTHO05D004797 1.6e-288 995.7 642 76.6
COL.COLO4_10388 Corchorus olitorius HOM05D004119 ORTHO05D004797 3.6e-288 994.6 588 80.6
Nitab4.5_0004389g0050 Nicotiana tabacum HOM05D004119 ORTHO05D004797 3.6e-288 994.6 643 75.1
PGR119G0026 Punica granatum HOM05D004119 ORTHO05D004797 4.7e-288 994.2 581 80.9
Oeu055814.1 Olea europaea HOM05D004119 ORTHO05D004797 1.8e-287 992.3 591 82.7
CAN.G649.14 Capsicum annuum HOM05D004119 ORTHO05D004797 2.3e-287 991.9 643 75.7
Manes.14G015300 Manihot esculenta HOM05D004119 ORTHO05D004797 2.3e-287 991.9 596 79.2
Peaxi162Scf00062g01417 Petunia axillaris HOM05D004119 ORTHO05D004797 4.0e-287 991.1 643 76.0
MD03G1018700 Malus domestica HOM05D004119 ORTHO05D004797 6.8e-287 990.3 593 79.9
Ciclev10014571m.g Citrus clementina HOM05D004119 ORTHO05D004797 1.2e-286 989.6 606 78.9
TWI60G0817 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 4.4e-286 987.6 647 75.3
DCAR_002029 Daucus carota HOM05D004119 ORTHO05D004797 2.2e-285 985.3 580 80.7
Sopen01g002470 Solanum pennellii HOM05D004119 ORTHO05D004797 2.2e-285 985.3 583 80.8
TWI32G0563 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 4.8e-285 984.2 651 74.8
Solyc01g006490.4 Solanum lycopersicum HOM05D004119 ORTHO05D004797 8.3e-285 983.4 626 76.8
Cpa.g.sc117.3 Carica papaya HOM05D004119 ORTHO05D004797 9.1e-284 979.9 603 77.9
CiPaw.13G168300 Carya illinoinensis HOM05D004119 ORTHO05D004797 9.1e-284 979.9 588 79.3
Nitab4.5_0001568g0150 Nicotiana tabacum HOM05D004119 ORTHO05D004797 9.1e-284 979.9 650 75.7
PGSC0003DMG400032205 Solanum tuberosum HOM05D004119 ORTHO05D004797 1.2e-283 979.5 583 80.8
Gohir.D05G069700 Gossypium hirsutum HOM05D004119 ORTHO05D004797 2.0e-283 978.8 592 79.2
Potri.001G013900 Populus trichocarpa HOM05D004119 ORTHO05D004797 3.5e-283 978.0 659 73.3
FAN11G1732 Fragaria x ananassa HOM05D004119 ORTHO05D004797 1.0e-282 976.5 641 74.3
Gorai.004G018600 Gossypium raimondii HOM05D004119 ORTHO05D004797 2.9e-282 974.9 645 74.3
Gohir.A08G012900 Gossypium hirsutum HOM05D004119 ORTHO05D004797 5.0e-282 974.2 651 73.9
MD11G1020700 Malus domestica HOM05D004119 ORTHO05D004797 5.0e-282 974.2 641 74.6
RcHm_v2.0_Chr5g0079321 Rosa chinensis HOM05D004119 ORTHO05D004797 5.0e-282 974.2 643 73.9
THA.LOC104811125 Tarenaya hassleriana HOM05D004119 ORTHO05D004797 5.0e-282 974.2 633 75.0
Eucgr.B02600 Eucalyptus grandis HOM05D004119 ORTHO05D004797 6.5e-282 973.8 588 78.6
FAN25G0197 Fragaria x ananassa HOM05D004119 ORTHO05D004797 6.5e-282 973.8 641 74.1
Gohir.A05G066800 Gossypium hirsutum HOM05D004119 ORTHO05D004797 1.1e-281 973.0 592 78.7
Gohir.D08G023300 Gossypium hirsutum HOM05D004119 ORTHO05D004797 1.5e-281 972.6 645 73.6
FvH4_3g43840 Fragaria vesca HOM05D004119 ORTHO05D004797 2.5e-281 971.8 641 73.9
Nn2g15648 Nelumbo nucifera HOM05D004119 ORTHO05D004797 5.5e-281 970.7 599 77.8
Sabra01G0010200 Salix brachista HOM05D004119 ORTHO05D004797 7.2e-281 970.3 637 74.3
Sed0015121 Sechium edule HOM05D004119 ORTHO05D004797 7.2e-281 970.3 605 76.9
Gorai.009G070700 Gossypium raimondii HOM05D004119 ORTHO05D004797 1.2e-280 969.5 592 78.5
CSS0046641 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 1.6e-280 969.1 654 73.9
Haze_23030 Corylus avellana HOM05D004119 ORTHO05D004797 1.6e-280 969.1 709 69.0
Thhalv10012956m.g Eutrema salsugineum HOM05D004119 ORTHO05D004797 2.0e-278 962.2 645 72.6
Carub.0006s1120 Capsella rubella HOM05D004119 ORTHO05D004797 4.4e-278 961.1 642 72.6
Aqoxy2G00086 Aquilegia oxysepala HOM05D004119 ORTHO05D004797 9.8e-278 959.9 581 79.0
Lsat_1_v5_gn_6_49801 Lactuca sativa HOM05D004119 ORTHO05D004797 1.3e-277 959.5 638 72.9
CARHR200430 Cardamine hirsuta HOM05D004119 ORTHO05D004797 2.2e-277 958.7 648 72.2
Phvul.007G003400 Phaseolus vulgaris HOM05D004119 ORTHO05D004797 2.2e-277 958.7 581 78.5
Lalb_Chr02g0144391 Lupinus albus HOM05D004119 ORTHO05D004797 6.3e-277 957.2 619 75.4
AUR62019225 Chenopodium quinoa HOM05D004119 ORTHO05D004797 8.3e-277 956.8 582 77.7
Lalb_Chr21g0307631 Lupinus albus HOM05D004119 ORTHO05D004797 8.3e-277 956.8 639 73.6
Nitab4.5_0001146g0130 Nicotiana tabacum HOM05D004119 ORTHO05D004797 2.4e-276 955.3 644 74.2
Sp6g30940 Schrenkiella parvula HOM05D004119 ORTHO05D004797 3.1e-276 954.9 649 72.1
VMungo0720G1960 Vigna mungo HOM05D004119 ORTHO05D004797 5.4e-276 954.1 585 77.8
AUR62000053 Chenopodium quinoa HOM05D004119 ORTHO05D004797 7.0e-276 953.7 582 78.0
Sopen12g034830 Solanum pennellii HOM05D004119 ORTHO05D004797 2.7e-275 951.8 637 73.5
AT5G13030 Arabidopsis thaliana HOM05D004119 ORTHO05D004797 3.5e-275 951.4 642 72.3
Solyc12g100200.2 Solanum lycopersicum HOM05D004119 ORTHO05D004797 1.0e-274 949.9 637 73.3
Lj5g0022671 Lotus japonicus HOM05D004119 ORTHO05D004797 1.3e-274 949.5 585 76.8
Aa31LG3G14630 Aethionema arabicum HOM05D004119 ORTHO05D004797 1.7e-274 949.1 634 72.6
ATR0605G198 Amborella trichopoda HOM05D004119 ORTHO05D004797 1.7e-274 949.1 578 78.5
AL6G23620 Arabidopsis lyrata HOM05D004119 ORTHO05D004797 1.7e-274 949.1 588 76.2
Sed0006721 Sechium edule HOM05D004119 ORTHO05D004797 1.7e-274 949.1 588 76.9
PSO384G1641 Papaver somniferum HOM05D004119 ORTHO05D004797 3.8e-274 948.0 592 75.2
PSO339G4050 Papaver somniferum HOM05D004119 ORTHO05D004797 5.0e-274 947.6 592 75.2
Glyma.20G246800 Glycine max HOM05D004119 ORTHO05D004797 1.5e-273 946.0 545 81.5
C09p64070 Brassica napus HOM05D004119 ORTHO05D004797 1.9e-273 945.7 640 71.9
Psat6g242880 Pisum sativum HOM05D004119 ORTHO05D004797 1.9e-273 945.7 607 75.1
FAN21G0229 Fragaria x ananassa HOM05D004119 ORTHO05D004797 2.5e-273 945.3 627 73.4
Medtr1g116875 Medicago truncatula HOM05D004119 ORTHO05D004797 3.3e-273 944.9 606 74.8
BolC9t59244H Brassica oleracea HOM05D004119 ORTHO05D004797 5.5e-273 944.1 640 72.0
HanXRQChr02g0056721 Helianthus annuus HOM05D004119 ORTHO05D004797 7.2e-273 943.7 577 76.9
ECA248G2677 Erigeron canadensis HOM05D004119 ORTHO05D004797 1.2e-272 943.0 587 76.5
BraA10t44578Z Brassica rapa HOM05D004119 ORTHO05D004797 6.1e-272 940.6 589 75.7
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 8.0e-272 940.3 570 78.1
HanXRQChr11g0345481 Helianthus annuus HOM05D004119 ORTHO05D004797 8.0e-272 940.3 549 79.8
A10p25160 Brassica napus HOM05D004119 ORTHO05D004797 1.0e-271 939.9 589 75.7
ECA233G2530 Erigeron canadensis HOM05D004119 ORTHO05D004797 1.8e-271 939.1 571 77.9
vmacro12703 Vaccinium macrocarpon HOM05D004119 ORTHO05D004797 1.2e-270 936.4 528 83.9
Rhsim01G0187100 Rhododendron simsii HOM05D004119 ORTHO05D004797 5.7e-270 934.1 755 64.6
Lj1C433G5 Lonicera japonica HOM05D004119 ORTHO05D004797 4.9e-269 931.0 620 74.7
Os06g0320700 Oryza sativa ssp. japonica HOM05D004119 ORTHO05D004797 2.4e-268 928.7 549 80.0
HanXRQChr13g0404241 Helianthus annuus HOM05D004119 ORTHO05D004797 3.5e-267 924.9 646 70.6
TPR.G8893 Trifolium pratense HOM05D004119 ORTHO05D004797 7.8e-267 923.7 531 81.2
BolC3t13178H Brassica oleracea HOM05D004119 ORTHO05D004797 1.7e-266 922.5 643 70.8
C03p06720 Brassica napus HOM05D004119 ORTHO05D004797 2.3e-266 922.2 643 70.9
BraA03t09916Z Brassica rapa HOM05D004119 ORTHO05D004797 2.3e-266 922.2 614 73.6
A03p05770 Brassica napus HOM05D004119 ORTHO05D004797 3.9e-266 921.4 614 73.5
CAN.G575.41 Capsicum annuum HOM05D004119 ORTHO05D004797 4.3e-265 917.9 643 71.4
HPP92_018953 Vanilla planifolia HOM05D004119 ORTHO05D004797 6.0e-259 897.5 582 74.6
Lsat_1_v5_gn_1_68000 Lactuca sativa HOM05D004119 ORTHO05D004797 3.0e-258 895.2 585 74.9
CDE04G3728 Ceratophyllum demersum HOM05D004119 ORTHO05D004797 1.9e-257 892.5 532 79.1
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 2.5e-257 892.1 605 75.2
BcaB01g05381 Brassica carinata HOM05D004119 ORTHO05D004797 7.5e-254 880.6 633 68.9
SEGI_31462 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 2.3e-250 869.0 551 74.0
Actinidia06316 Actinidia chinensis HOM05D004119 ORTHO05D004797 4.4e-246 854.7 653 67.4
Lj2C671G7 Lonicera japonica HOM05D004119 ORTHO05D004797 2.9e-245 852.0 590 71.5
Hund21812 Selenicereus undatus HOM05D004119 ORTHO05D004797 1.3e-237 826.6 558 72.6
Lj1A436T13 Lonicera japonica HOM05D004119 ORTHO05D004797 3.0e-234 815.5 448 86.8
Sc16g0011910 Simmondsia chinensis HOM05D004119 ORTHO05D004797 7.3e-233 810.8 448 85.9
Mapoly0063s0012 Marchantia polymorpha HOM05D004119 ORTHO05D004797 7.6e-230 800.8 547 68.9
MBI04_g46409_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 9.3e-228 793.9 548 72.1
AagrBONN_evm.TU.Sc2ySwM_344.3798 Anthoceros agrestis HOM05D004119 ORTHO05D004797 2.1e-224 782.7 547 68.6
FAN16G3698 Fragaria x ananassa HOM05D004119 ORTHO05D004797 2.8e-224 782.3 439 83.1
Pp3c9_22190 Physcomitrium patens HOM05D004119 ORTHO05D004797 1.9e-220 769.6 588 62.6
SMO134G0253 Selaginella moellendorffii HOM05D004119 ORTHO05D004797 1.4e-207 726.9 513 69.8
SEGI_38661 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 5.7e-193 678.3 451 71.4
TAR623G1465 Trochodendron aralioides HOM05D004119 ORTHO05D004797 5.7e-193 678.3 505 67.1
CBR_g38091 Chara braunii HOM05D004119 ORTHO05D004797 9.7e-177 624.4 538 56.9
Zm00001eb381770 Zea mays HOM05D004119 ORTHO05D004797 7.2e-172 608.2 361 79.8
PGR119G0420 Punica granatum HOM05D004119 ORTHO05D004797 7.2e-164 581.6 344 79.9
Nn7g36025 Nelumbo nucifera HOM05D004119 ORTHO05D004797 1.6e-158 563.9 588 53.1
Cre16.g648900 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 1.6e-147 527.3 561 48.8
EL10Ac4g10322 Beta vulgaris HOM05D004119 ORTHO05D004797 7.5e-145 518.5 388 66.5
Oeu024459.1 Olea europaea HOM05D004119 ORTHO05D004797 1.7e-144 517.3 417 64.7
Dinv08059 Davidia involucrata HOM05D004119 ORTHO05D004797 2.2e-144 516.9 547 52.7
CSS0049397 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 1.2e-139 501.1 278 86.0
arahy.Tifrunner.gnm1.ann1.ZPWD91 Arachis hypogaea HOM05D004119 ORTHO05D004797 3.4e-137 493.0 280 82.5
arahy.Tifrunner.gnm1.ann1.J6MIXF Arachis hypogaea HOM05D004119 ORTHO05D004797 1.9e-132 477.2 309 74.8
PRCOL_00001378 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 1.3e-115 421.4 574 43.7
Psat3g017080 Pisum sativum HOM05D004119 ORTHO05D004797 3.0e-109 400.2 288 66.3
Cre02.g108250 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 6.5e-96 355.9 643 35.8
FvH4_3g45150 Fragaria vesca HOM05D004119 ORTHO05D004797 1.8e-90 337.8 263 66.2
RcHm_v2.0_Chr5g0079021 Rosa chinensis HOM05D004119 ORTHO05D004797 1.7e-88 331.3 184 82.1
Cfa025573 Carpinus fangiana HOM05D004119 ORTHO05D004797 2.8e-83 313.9 591 36.7
Pp3s34_210 Physcomitrium patens HOM05D000198 ORTHO05D004797 9.0e-82 308.9 506 37.2
TAR369G0071 Trochodendron aralioides HOM05D004119 ORTHO05D004797 3.8e-80 303.5 179 81.6
Glyma.10G296266 Glycine max HOM05D004119 ORTHO05D004797 5.0e-80 303.1 188 75.5
RcHm_v2.0_Chr5g0079011 Rosa chinensis HOM05D004119 ORTHO05D004797 5.0e-80 303.1 179 79.9
Lj1P432T25 Lonicera japonica HOM05D004119 ORTHO05D004797 3.0e-77 293.9 165 85.5
PRCOL_00005150 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 1.7e-75 288.1 602 33.4
MCO09G196 Micromonas commoda HOM05D004119 ORTHO05D004797 2.6e-68 264.2 615 32.7
Actinidia39374 Actinidia chinensis HOM05D004119 ORTHO05D004797 3.5e-65 253.8 321 46.7
Psat3g137640 Pisum sativum HOM05D004119 ORTHO05D004797 1.6e-62 245.0 195 64.1
TAR369G0199 Trochodendron aralioides HOM05D004119 ORTHO05D004797 2.1e-62 244.6 140 80.7
PRCOL_00005494 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 6.7e-61 239.6 600 30.7
MD11G1020000 Malus domestica HOM05D004119 ORTHO05D004797 2.4e-50 204.5 120 82.5
TAR362G0095 Trochodendron aralioides HOM05D004119 ORTHO05D004797 5.0e-48 196.8 116 79.3
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 1.2e-44 185.7 100 85.0
Manes.06G169401 Manihot esculenta HOM05D004119 ORTHO05D004797 4.9e-43 180.3 107 78.5
VMungo0720G3038 Vigna mungo HOM05D004119 ORTHO05D004797 3.3e-39 167.5 155 56.8
TAR362G1239 Trochodendron aralioides HOM05D004119 ORTHO05D004797 2.3e-37 161.4 132 60.6
TAR369G0705 Trochodendron aralioides HOM05D004119 ORTHO05D004797 8.0e-30 136.3 114 60.5
TPR.G14880 Trifolium pratense HOM05D004119 ORTHO05D004797 1.2e-28 132.5 77 75.3
Hund21661 Selenicereus undatus HOM05D002401 ORTHO05D007109 2.6e-28 131.3 67 88.1
MBI04_g37845_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 5.8e-28 130.2 65 89.2
Lj1A436G11 Lonicera japonica HOM05D004119 ORTHO05D004797 1.1e-26 125.9 100 62.0
Lsat_1_v5_gn_4_11801 Lactuca sativa HOM05D004119 ORTHO05D004797 6.0e-25 120.2 137 46.7
RcHm_v2.0_Chr5g0079031 Rosa chinensis HOM05D004119 ORTHO05D004797 8.3e-19 99.8 64 73.4
TAR633G0263 Trochodendron aralioides HOM05D004119 ORTHO05D004797 9.9e-12 76.3 54 72.2
TPR.G25082 Trifolium pratense HOM05D004119 ORTHO05D004797 3.8e-11 74.3 78 55.1
RcHm_v2.0_Chr5g0079041 Rosa chinensis HOM05D004119 ORTHO05D004797 4.9e-11 73.9 75 53.3
BraA01t00507Z Brassica rapa HOM05D004119 ORTHO05D004797 1.9e-07 62.0 78 39.7
Actinidia39373 Actinidia chinensis HOM05D004119 ORTHO05D004797 4.3e-07 60.8 66 47.0
HanXRQChr13g0426091 Helianthus annuus HOM05D004119 ORTHO05D004797 3.6e-06 57.8 38 63.2


User provided reference genes

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