Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.12417 Avicennia marina HOM05D001598 ORTHO05D007192 0.0e+00 1284.6 661 100.0
Migut.N02410 Erythranthe guttata HOM05D001598 ORTHO05D007192 1.9e-305 1052.0 666 81.2
SalBow3G4459 Salvia bowleyana HOM05D001598 ORTHO05D007192 6.1e-291 1003.8 665 78.6
SGA_v2.0_scaffold16G07584 Striga asiatica HOM05D001598 ORTHO05D007192 3.0e-290 1001.5 664 78.2
Dinv32128 Davidia involucrata HOM05D001598 ORTHO05D007192 1.5e-276 956.1 657 76.3
Solyc01g009050.3 Solanum lycopersicum HOM05D001598 ORTHO05D007192 2.3e-274 948.7 659 73.0
CSS0038227 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 8.8e-274 946.8 657 74.9
Sopen01g004540 Solanum pennellii HOM05D001598 ORTHO05D007192 1.3e-272 943.0 659 72.5
Rhsim01G0197500 Rhododendron simsii HOM05D001598 ORTHO05D007192 1.7e-269 932.6 657 74.0
CAN.G651.7 Capsicum annuum HOM05D001598 ORTHO05D007192 5.0e-269 931.0 660 72.0
Eucgr.J00614 Eucalyptus grandis HOM05D001598 ORTHO05D007192 1.1e-268 929.9 657 73.1
vmacro14297 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 1.5e-268 929.5 662 73.0
Ciclev10014503m.g Citrus clementina HOM05D001598 ORTHO05D007192 3.0e-266 921.8 664 72.6
COL.COLO4_25318 Corchorus olitorius HOM05D001598 ORTHO05D007192 1.5e-265 919.5 660 73.3
Hma1.2p1_0218F.1_g092460 Hydrangea macrophylla HOM05D001598 ORTHO05D007192 4.4e-265 917.9 657 73.2
DCAR_000741 Daucus carota HOM05D001598 ORTHO05D007192 5.4e-263 911.0 657 72.6
GSVIVG01037501001 Vitis vinifera HOM05D001598 ORTHO05D007192 1.2e-262 909.8 657 73.2
Gorai.009G080100 Gossypium raimondii HOM05D001598 ORTHO05D007192 2.0e-262 909.1 659 72.4
TAR375G0698 Trochodendron aralioides HOM05D001598 ORTHO05D007192 4.5e-262 907.9 657 72.1
Nitab4.5_0002300g0120 Nicotiana tabacum HOM05D001598 ORTHO05D007192 5.9e-262 907.5 652 71.2
Potri.009G156400 Populus trichocarpa HOM05D001598 ORTHO05D007192 7.7e-262 907.1 657 72.6
Gohir.A05G076000 Gossypium hirsutum HOM05D001598 ORTHO05D007192 2.9e-261 905.2 659 71.8
Cc01_g07890 Coffea canephora HOM05D001598 ORTHO05D007192 2.1e-259 899.0 665 69.6
HanXRQChr06g0180651 Helianthus annuus HOM05D001598 ORTHO05D007192 3.6e-259 898.3 653 72.6
Atru.chr3.2751 Acer truncatum HOM05D001598 ORTHO05D007192 8.0e-259 897.1 659 71.2
Gohir.D05G078700 Gossypium hirsutum HOM05D001598 ORTHO05D007192 8.0e-259 897.1 646 72.9
AL6G32560 Arabidopsis lyrata HOM05D001598 ORTHO05D007192 2.3e-258 895.6 666 69.4
Actinidia22467 Actinidia chinensis HOM05D001598 ORTHO05D007192 7.5e-257 890.6 657 71.7
Sabra09G0122500 Salix brachista HOM05D001598 ORTHO05D007192 2.2e-256 889.0 657 70.8
unitig_8.g2986 Utricularia gibba HOM05D001598 ORTHO05D007192 3.7e-256 888.3 642 72.6
CiPaw.13G127200 Carya illinoinensis HOM05D001598 ORTHO05D007192 8.3e-256 887.1 657 72.3
RcHm_v2.0_Chr5g0048741 Rosa chinensis HOM05D001598 ORTHO05D007192 1.1e-255 886.7 658 71.1
AUR62020182 Chenopodium quinoa HOM05D001598 ORTHO05D007192 1.8e-255 885.9 661 70.3
Thhalv10012894m.g Eutrema salsugineum HOM05D001598 ORTHO05D007192 1.8e-255 885.9 662 68.9
CARHR191850 Cardamine hirsuta HOM05D001598 ORTHO05D007192 2.4e-255 885.6 667 69.1
Hund20974 Selenicereus undatus HOM05D001598 ORTHO05D007192 2.7e-254 882.1 654 69.9
AT5G20990 Arabidopsis thaliana HOM05D001598 ORTHO05D007192 3.5e-254 881.7 666 68.3
MD11G1181200 Malus domestica HOM05D001598 ORTHO05D007192 6.6e-253 877.5 667 69.3
PGR119G0245 Punica granatum HOM05D001598 ORTHO05D007192 1.1e-252 876.7 657 71.1
TWI31G0930 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 1.1e-252 876.7 657 70.5
ECA247G1799 Erigeron canadensis HOM05D001598 ORTHO05D007192 1.9e-252 875.9 663 70.0
BolC3t13663H Brassica oleracea HOM05D001598 ORTHO05D007192 3.3e-252 875.2 667 67.6
Carub.0006s1931 Capsella rubella HOM05D001598 ORTHO05D007192 3.3e-252 875.2 665 68.6
BraA03t10351Z Brassica rapa HOM05D001598 ORTHO05D007192 3.6e-251 871.7 667 67.6
PSO063G3947 Papaver somniferum HOM05D001598 ORTHO05D007192 3.6e-251 871.7 658 68.7
A03p10390 Brassica napus HOM05D001598 ORTHO05D007192 4.7e-251 871.3 665 67.7
Aqoxy3G02341 Aquilegia oxysepala HOM05D001598 ORTHO05D007192 1.4e-250 869.8 657 68.2
MELO3C015599.2 Cucumis melo HOM05D001598 ORTHO05D007192 5.2e-250 867.8 661 67.8
CANSAT54G2824 Cannabis sativa HOM05D001598 ORTHO05D007192 6.8e-250 867.5 659 69.7
Lalb_Chr10g0105801 Lupinus albus HOM05D001598 ORTHO05D007192 3.4e-249 865.1 654 69.3
CsaV3_1G041840 Cucumis sativus L. HOM05D001598 ORTHO05D007192 5.7e-249 864.4 661 67.6
Lsat_1_v5_gn_2_37520 Lactuca sativa HOM05D001598 ORTHO05D007192 5.7e-249 864.4 661 70.2
C03p11930 Brassica napus HOM05D001598 ORTHO05D007192 1.1e-247 860.1 667 67.3
Glyma.02G272700 Glycine max HOM05D001598 ORTHO05D007192 1.8e-247 859.4 654 69.1
Oeu051504.1 Olea europaea HOM05D001598 ORTHO05D007192 3.2e-247 858.6 659 70.3
LjContig00564g0017485 Lotus japonicus HOM05D001598 ORTHO05D007192 4.1e-247 858.2 654 69.6
EL10Ac7g16239 Beta vulgaris HOM05D001598 ORTHO05D007192 9.2e-247 857.1 694 66.3
ClCG03G014390 Citrullus lanatus HOM05D001598 ORTHO05D007192 1.3e-245 853.2 663 67.4
Phvul.008G209600 Phaseolus vulgaris HOM05D001598 ORTHO05D007192 1.1e-244 850.1 656 68.8
Sp6g23530 Schrenkiella parvula HOM05D001598 ORTHO05D007192 1.5e-244 849.7 663 67.3
Sed0001025 Sechium edule HOM05D001598 ORTHO05D007192 1.5e-244 849.7 662 66.5
Aa31LG1G13740 Aethionema arabicum HOM05D001598 ORTHO05D007192 6.1e-243 844.3 664 66.7
Nitab4.5_0000428g0110 Nicotiana tabacum HOM05D001598 ORTHO05D007192 8.9e-242 840.5 652 67.3
VMungo0647G2429 Vigna mungo HOM05D001598 ORTHO05D007192 3.4e-241 838.6 657 67.9
FAN25G1601 Fragaria x ananassa HOM05D001598 ORTHO05D007192 1.4e-239 833.2 657 67.1
Medtr5g087490 Medicago truncatula HOM05D001598 ORTHO05D007192 1.9e-239 832.8 655 68.1
TPR.G11692 Trifolium pratense HOM05D001598 ORTHO05D007192 5.4e-239 831.2 655 67.5
MBI07_g03077_MAGBIO Magnolia biondii HOM05D001598 ORTHO05D007192 1.7e-237 826.2 662 65.3
arahy.Tifrunner.gnm1.ann1.4UW9RQ Arachis hypogaea HOM05D001598 ORTHO05D007192 2.3e-237 825.9 700 64.3
FAN11G2542 Fragaria x ananassa HOM05D001598 ORTHO05D007192 6.6e-237 824.3 658 66.7
arahy.Tifrunner.gnm1.ann1.IS34PQ Arachis hypogaea HOM05D001598 ORTHO05D007192 1.1e-236 823.5 700 64.1
FAN21G0325 Fragaria x ananassa HOM05D001598 ORTHO05D007192 2.5e-236 822.4 649 67.5
AUR62001598 Chenopodium quinoa HOM05D001598 ORTHO05D007192 6.2e-235 817.8 692 64.3
Ah.08g222590 Amaranthus hybridus HOM05D001598 ORTHO05D007192 5.8e-233 811.2 614 69.5
Zm00001eb432770 Zea mays HOM05D001598 ORTHO05D007192 4.9e-232 808.1 658 65.8
Peaxi162Scf00050g02227 Petunia axillaris HOM05D001598 ORTHO05D007192 1.1e-228 797.0 869 53.3
ATR0215G007 Amborella trichopoda HOM05D001598 ORTHO05D007192 1.9e-228 796.2 660 62.9
Manes.11G103300 Manihot esculenta HOM05D001598 ORTHO05D007192 3.1e-226 788.9 590 69.8
Thecc.09G265000 Theobroma cacao HOM05D001598 ORTHO05D007192 7.1e-223 777.7 663 64.7
Cpa.g.sc34.224 Carica papaya HOM05D001598 ORTHO05D007192 1.9e-220 769.6 618 67.0
Prupe.6G153900 Prunus persica HOM05D001598 ORTHO05D007192 1.9e-220 769.6 585 69.2
Psat2g023160 Pisum sativum HOM05D001598 ORTHO05D007192 9.6e-220 767.3 608 68.3
Haze_23633 Corylus avellana HOM05D001598 ORTHO05D007192 1.5e-217 760.0 728 58.9
Sc21g0006570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 2.6e-217 759.2 592 67.7
Pp3c14_4050 Physcomitrium patens HOM05D001598 ORTHO05D007192 2.2e-216 756.1 683 59.6
CDE02G2133 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 7.3e-212 741.1 661 59.9
CDE06G2705 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 2.1e-206 723.0 678 58.6
Ca_06138_v3 Cicer arietinum L. HOM05D001598 ORTHO05D007192 3.3e-204 715.7 652 61.2
SMO145G0256 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 2.4e-199 699.5 658 57.4
AagrBONN_evm.TU.Sc2ySwM_228.3025 Anthoceros agrestis HOM05D001598 ORTHO05D007192 6.5e-184 648.3 665 53.8
QL01p007286 Quercus lobata HOM05D001598 ORTHO05D007192 6.7e-181 638.3 851 47.6
CSS0048937 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 3.7e-179 632.5 477 70.4
FvH4_3g26260 Fragaria vesca HOM05D001598 ORTHO05D007192 2.6e-177 626.3 507 65.9
HPP92_013469 Vanilla planifolia HOM05D001598 ORTHO05D007192 1.3e-176 624.0 578 58.5
Lj2C893G11 Lonicera japonica HOM05D001598 ORTHO05D007192 2.2e-168 596.7 476 66.2
Mapoly1495s0001 Marchantia polymorpha HOM05D001598 ORTHO05D007192 7.9e-166 588.2 569 56.9
HPP92_013468 Vanilla planifolia HOM05D001598 ORTHO05D007192 2.4e-154 550.1 608 53.0
Atru.ctg664.11 Acer truncatum HOM05D001598 ORTHO05D007192 3.1e-154 549.7 493 62.1
SEGI_02371 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 5.0e-144 515.8 441 63.3
Lj2A895G19 Lonicera japonica HOM05D001598 ORTHO05D007192 2.0e-124 450.7 429 58.3
Cre10.g451400 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 1.7e-115 421.0 465 51.4
SEGI_00915 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 2.7e-105 387.1 350 61.1
MCO09G295 Micromonas commoda HOM05D001598 ORTHO05D007192 2.4e-82 310.8 431 43.2
CSS0046041 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 2.3e-80 304.3 205 75.6
Lj2A895T22 Lonicera japonica HOM05D001598 ORTHO05D007192 4.8e-78 296.6 201 75.1
AagrBONN_evm.TU.Sc2ySwM_117.1323 Anthoceros agrestis HOM05D001598 ORTHO05D007192 5.3e-77 293.1 411 43.6
SHI25335 Sapria himalayana HOM05D001598 ORTHO05D000001 1.9e-74 284.6 232 61.2
HPP92_013448 Vanilla planifolia HOM05D001598 ORTHO05D007192 2.4e-69 267.7 181 72.9
SEGI_37017 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 5.7e-63 246.5 168 71.4
PRCOL_00000516 Prasinoderma coloniale HOM05D005603 ORTHO05D006944 8.2e-62 242.7 373 42.1
vmacro23059 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 7.4e-55 219.5 248 53.2
TPR.G11462 Trifolium pratense HOM05D001598 ORTHO05D007192 3.4e-52 210.7 285 48.4
Nn1g00103 Nelumbo nucifera HOM05D001598 ORTHO05D007192 2.6e-47 194.5 139 71.9
CBR_g53773 Chara braunii HOM05D000019 ORTHO05D000002 3.0e-40 171.0 445 33.0
Zm00001eb067470 Zea mays HOM05D001598 ORTHO05D007192 1.3e-38 165.6 167 56.9
CBR_g53784 Chara braunii HOM05D001598 ORTHO05D007192 2.0e-36 158.3 138 59.4
Nn1g08035 Nelumbo nucifera HOM05D001598 ORTHO05D007192 5.9e-36 156.8 92 81.5
TPR.G24627 Trifolium pratense HOM05D001598 ORTHO05D007192 3.8e-35 154.1 146 57.5
QL01p007301 Quercus lobata HOM05D001598 ORTHO05D007192 5.0e-35 153.7 99 74.7
BcaB08g37328 Brassica carinata HOM05D001598 ORTHO05D007192 1.8e-32 145.2 93 77.4
HanXRQChr07g0205981 Helianthus annuus HOM05D001598 ORTHO05D007192 2.6e-31 141.4 95 72.6
SGA_v2.0_scaffold6G03251 Striga asiatica HOM05D001598 ORTHO05D007192 2.6e-31 141.4 630 28.6
SEGI_32063 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 1.8e-29 135.2 103 65.0
Lj2C893T10 Lonicera japonica HOM05D001598 ORTHO05D007192 2.4e-29 134.8 79 81.0
Mapoly0056s0125 Marchantia polymorpha HOM05D001598 ORTHO05D007192 9.1e-29 132.9 98 65.3
SHI25334 Sapria himalayana HOM05D001598 ORTHO05D000001 9.1e-29 132.9 90 70.0
BcaB08g37330 Brassica carinata HOM05D001598 ORTHO05D007192 1.3e-27 129.0 83 79.5
PRCOL_00002568 Prasinoderma coloniale HOM05D001598 ORTHO05D007192 2.8e-25 121.3 161 44.1
MCO03G199 Micromonas commoda HOM05D001598 ORTHO05D007192 7.5e-23 113.2 165 41.2
BcaC04g19497 Brassica carinata HOM05D001598 ORTHO05D007192 4.9e-22 110.5 90 67.8
Ca_02574_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 1.3e-19 102.4 84 64.3
Glyma.14G045450 Glycine max HOM05D001598 ORTHO05D007192 1.7e-19 102.1 65 73.8
Ca_14173_v3 Cicer arietinum L. HOM05D000092 ORTHO05D005910 5.0e-19 100.5 96 61.5
TAR374G1328 Trochodendron aralioides HOM05D001598 ORTHO05D007192 5.0e-19 100.5 67 77.6
Cre06.g282150 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 6.1e-17 93.6 168 36.3
Sc01g0005570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 4.9e-14 84.0 67 61.2
CBR_g53769 Chara braunii HOM05D000019 ORTHO05D000002 9.2e-13 79.7 58 65.5
Os04g0661600 Oryza sativa ssp. japonica HOM05D001598 ORTHO05D007192 1.3e-11 75.9 61 67.2
Gohir.D02G147550 Gossypium hirsutum HOM05D006828 ORTHO05D008312 6.6e-11 73.6 50 72.0
Gorai.013G167300 Gossypium raimondii HOM05D006828 ORTHO05D008312 6.6e-11 73.6 50 72.0
Gohir.D05G085901 Gossypium hirsutum HOM05D001598 ORTHO05D008312 3.6e-09 67.8 51 68.6
TPR.G22712 Trifolium pratense HOM05D001598 ORTHO05D046738 4.0e-08 64.3 89 52.8
SMO307G0084 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 1.7e-06 58.9 62 41.9
TWI56G1164 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 3.7e-06 57.8 59 52.5


User provided reference genes

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