Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.11775 Avicennia marina HOM05D006287 ORTHO05D008192 1.4e-143 514.6 482 100.0
MSTRG.25851 Avicennia marina HOM05D006287 ORTHO05D008192 8.3e-83 312.8 491 53.0
SGA_v2.0_scaffold22G09931 Striga asiatica HOM05D006287 ORTHO05D008192 8.7e-56 223.0 247 50.6
Oeu008766.1 Olea europaea HOM05D006287 ORTHO05D008192 2.8e-54 218.0 485 47.6
Oeu032501.2 Olea europaea HOM05D006287 ORTHO05D008192 7.9e-41 173.3 188 46.3
Cc11_g01810 Coffea canephora HOM05D006287 ORTHO05D008192 3.7e-38 164.5 215 41.4
Hma1.2p1_0007F.1_g005110 Hydrangea macrophylla HOM05D006287 ORTHO05D008192 2.4e-37 161.8 169 45.6
CSS0042508 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 2.0e-36 158.7 169 43.8
CSS0048694 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 2.2e-35 155.2 218 39.0
CiPaw.06G059600 Carya illinoinensis HOM05D006287 ORTHO05D008192 2.5e-34 151.8 174 43.7
Atru.chr7.2375 Acer truncatum HOM05D006287 ORTHO05D008192 9.7e-31 139.8 170 44.1
CAN.G98.23 Capsicum annuum HOM05D006287 ORTHO05D008192 1.6e-30 139.0 172 40.1
Nitab4.5_0000151g0190 Nicotiana tabacum HOM05D006287 ORTHO05D008192 1.6e-30 139.0 215 36.7
Nitab4.5_0001669g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 1.6e-30 139.0 215 36.7
Prupe.6G275900 Prunus persica HOM05D006287 ORTHO05D008192 1.6e-30 139.0 229 37.6
Thecc.09G149000 Theobroma cacao HOM05D006287 ORTHO05D008192 2.2e-30 138.7 166 42.2
GSVIVG01035807001 Vitis vinifera HOM05D006287 ORTHO05D008192 8.2e-30 136.7 148 43.9
Ciclev10010816m.g Citrus clementina HOM05D006287 ORTHO05D008192 1.1e-29 136.3 165 40.6
Haze_21571 Corylus avellana HOM05D006287 ORTHO05D008192 1.1e-29 136.3 217 38.2
CANSAT11G2472 Cannabis sativa HOM05D006287 ORTHO05D008192 4.5e-28 131.0 147 44.2
THA.LOC104824237 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 5.9e-28 130.6 170 38.2
Dinv11617 Davidia involucrata HOM05D006287 ORTHO05D008192 3.8e-27 127.9 116 50.9
Nn5g27729 Nelumbo nucifera HOM05D006287 ORTHO05D008192 3.8e-27 127.9 165 40.6
Solyc08g067060.2 Solanum lycopersicum HOM05D006287 ORTHO05D008192 1.9e-26 125.6 245 31.8
PGSC0003DMG400023145 Solanum tuberosum HOM05D006287 ORTHO05D008192 3.2e-26 124.8 246 31.3
Actinidia15687 Actinidia chinensis HOM05D006287 ORTHO05D008192 4.2e-26 124.4 132 47.0
AT2G39230 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 5.5e-26 124.0 185 34.6
Sopen08g021010 Solanum pennellii HOM05D006287 ORTHO05D008192 1.6e-25 122.5 244 31.6
VMungo0331G1641 Vigna mungo HOM05D006287 ORTHO05D008192 2.1e-25 122.1 223 35.9
Cpa.g.sc1.269 Carica papaya HOM05D006287 ORTHO05D008192 6.1e-25 120.6 180 40.0
DCAR_006447 Daucus carota HOM05D006287 ORTHO05D008192 3.0e-24 118.2 177 36.2
PGR142G2973 Punica granatum HOM05D006287 ORTHO05D008192 5.1e-24 117.5 240 32.1
Thhalv10010921m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 6.7e-24 117.1 178 34.8
Psat7g237040 Pisum sativum HOM05D006287 ORTHO05D008192 1.5e-23 115.9 137 40.1
A09p47970 Brassica napus HOM05D006287 ORTHO05D008192 2.0e-23 115.5 246 32.1
BraA09t40252Z Brassica rapa HOM05D006287 ORTHO05D008192 2.5e-23 115.2 248 33.9
QL05p049822 Quercus lobata HOM05D006287 ORTHO05D008192 2.5e-23 115.2 131 44.3
Aa31sc33G30 Aethionema arabicum HOM05D006287 ORTHO05D008192 3.3e-23 114.8 219 29.2
Nn3g20345 Nelumbo nucifera HOM05D006287 ORTHO05D008192 7.4e-23 113.6 165 40.6
Potri.006G250700 Populus trichocarpa HOM05D006287 ORTHO05D008192 2.2e-22 112.1 196 35.7
Sabra06G0196000 Salix brachista HOM05D001686 ORTHO05D008192 2.8e-22 111.7 183 37.7
Ca_26550_v3 Cicer arietinum L. HOM05D006287 ORTHO05D008192 3.7e-22 111.3 125 44.8
Phvul.009G090400 Phaseolus vulgaris HOM05D006287 ORTHO05D008192 3.7e-22 111.3 139 44.6
TWI63G1321 Tripterygium wilfordii HOM05D006287 ORTHO05D008192 4.8e-22 110.9 131 42.7
BcaB01g00140 Brassica carinata HOM05D006287 ORTHO05D008192 6.3e-22 110.5 178 34.3
Duzib168G0154 Durio zibethinus HOM05D006287 ORTHO05D008192 6.3e-22 110.5 132 41.7
Glyma.07G068500 Glycine max HOM05D006287 ORTHO05D008192 6.3e-22 110.5 133 43.6
QL08p000602 Quercus lobata HOM05D006287 ORTHO05D008192 2.4e-21 108.6 136 41.2
Sp4g21560 Schrenkiella parvula HOM05D006287 ORTHO05D008192 2.4e-21 108.6 207 27.5
SpUn0018_0110 Schrenkiella parvula HOM05D006287 ORTHO05D008192 2.4e-21 108.6 207 27.5
CARHR164980 Cardamine hirsuta HOM05D006287 ORTHO05D008192 3.1e-21 108.2 167 32.3
Thhalv10017602m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 6.9e-21 107.1 177 32.2
BcaNung04649 Brassica carinata HOM05D006287 ORTHO05D008192 9.1e-21 106.7 247 32.0
C08p30210 Brassica napus HOM05D006287 ORTHO05D008192 9.1e-21 106.7 247 32.0
Gorai.011G097400 Gossypium raimondii HOM05D006287 ORTHO05D008192 9.1e-21 106.7 165 37.0
BolC8t50627H Brassica oleracea HOM05D006287 ORTHO05D008192 1.2e-20 106.3 248 32.3
Lalb_Chr07g0185941 Lupinus albus HOM05D006287 ORTHO05D008192 2.0e-20 105.5 189 36.0
COL.COLO4_23984 Corchorus olitorius HOM05D006287 ORTHO05D008192 5.9e-20 104.0 116 42.2
arahy.Tifrunner.gnm1.ann1.VPFI8Q Arachis hypogaea HOM05D006287 ORTHO05D008192 1.0e-19 103.2 197 35.0
AT3G54980 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 1.7e-19 102.4 196 30.1
Duzib150G0458 Durio zibethinus HOM05D006287 ORTHO05D008192 2.2e-19 102.1 133 39.1
Carub.0004s2128 Capsella rubella HOM05D006287 ORTHO05D008192 6.5e-19 100.5 130 39.2
LjContig00081g0002723 Lotus japonicus HOM05D006287 ORTHO05D008192 6.5e-19 100.5 135 37.0
AL4G36540 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 1.1e-18 99.8 129 38.8
AL5G36090 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 1.1e-18 99.8 246 29.3
Lj7C718G17 Lonicera japonica HOM05D006287 ORTHO05D008192 1.1e-18 99.8 124 40.3
Peaxi162Scf00341g00062 Petunia axillaris HOM05D006287 ORTHO05D008192 4.2e-18 97.8 212 33.5
THA.LOC104809984 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 2.1e-17 95.5 166 32.5
Medtr4g076540 Medicago truncatula HOM05D006287 ORTHO05D008192 2.7e-17 95.1 136 38.2
RcHm_v2.0_Chr7g0216391 Rosa chinensis HOM05D006287 ORTHO05D008192 3.6e-17 94.7 126 42.9
TPR.G5411 Trifolium pratense HOM05D008207 ORTHO05D010373 1.0e-16 93.2 128 37.5
TPR.G5606 Trifolium pratense HOM05D006287 ORTHO05D008192 1.0e-16 93.2 143 34.3
MBI08_g04815_MAGBIO Magnolia biondii HOM05D006287 ORTHO05D008192 3.9e-16 91.3 138 38.4
ATR0782G042 Amborella trichopoda HOM05D006287 ORTHO05D008192 5.1e-16 90.9 198 28.3
Lsat_1_v5_gn_6_22161 Lactuca sativa HOM05D006287 ORTHO05D008192 5.1e-16 90.9 184 33.2
Eucgr.I01690 Eucalyptus grandis HOM05D006287 ORTHO05D008192 8.8e-16 90.1 132 39.4
Sc25g0000480 Simmondsia chinensis HOM05D006287 ORTHO05D008192 8.8e-16 90.1 220 26.8
FvH4_5g25890 Fragaria vesca HOM05D006287 ORTHO05D008192 1.5e-15 89.4 143 36.4
FAN18G3351 Fragaria x ananassa HOM05D006287 ORTHO05D008192 1.5e-15 89.4 143 36.4
CDE03G0083 Ceratophyllum demersum HOM05D006287 ORTHO05D008192 2.6e-15 88.6 244 30.3
MD04G1151000 Malus domestica HOM05D006287 ORTHO05D008192 3.3e-15 88.2 123 36.6
ClCG02G013330 Citrullus lanatus HOM05D006287 ORTHO05D008192 4.4e-15 87.8 180 31.7
Sed0001816 Sechium edule HOM05D006287 ORTHO05D008192 5.7e-15 87.4 132 34.8
Sed0018262 Sechium edule HOM05D006287 ORTHO05D008192 5.7e-15 87.4 196 30.1
Carub.0005s2160 Capsella rubella HOM05D006287 ORTHO05D008192 2.8e-14 85.1 215 30.2
Nitab4.5_0008089g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 4.8e-14 84.3 111 35.1
ATR0782G035 Amborella trichopoda HOM05D006287 ORTHO05D008192 6.3e-14 84.0 131 38.2
Aqoxy7G02057 Aquilegia oxysepala HOM05D006287 ORTHO05D008192 5.3e-13 80.9 173 30.6
HanXRQChr02g0050751 Helianthus annuus HOM05D006287 ORTHO05D008192 1.2e-12 79.7 186 31.7
MD12G1164900 Malus domestica HOM05D006287 ORTHO05D008192 4.5e-12 77.8 117 35.0
MELO3C020947.2 Cucumis melo HOM05D006287 ORTHO05D008192 5.9e-12 77.4 181 31.5
BcaNung04644 Brassica carinata HOM05D006287 ORTHO05D008192 2.2e-11 75.5 181 33.1
CsaV3_2G017510 Cucumis sativus L. HOM05D006287 ORTHO05D008192 2.2e-11 75.5 180 30.0
AUR62015977 Chenopodium quinoa HOM05D006287 ORTHO05D008192 3.8e-11 74.7 233 25.8
CAN.G1030.29 Capsicum annuum HOM05D006287 ORTHO05D008192 5.0e-11 74.3 104 34.6
Hund04746 Selenicereus undatus HOM05D006287 ORTHO05D008192 5.0e-11 74.3 144 31.2
HPP92_023171 Vanilla planifolia HOM05D006287 ORTHO05D008192 8.5e-11 73.6 200 27.5
AUR62015978 Chenopodium quinoa HOM05D006287 ORTHO05D008192 1.4e-10 72.8 225 29.8
Migut.A00317 Erythranthe guttata HOM05D006287 ORTHO05D008192 3.2e-10 71.6 38 73.7
DCAR_006446 Daucus carota HOM05D006287 ORTHO05D008192 5.5e-10 70.9 164 31.1
SEGI_12665 Sequoiadendron giganteum HOM05D007455 ORTHO05D009431 1.2e-09 69.7 165 25.5
Oeu030203.1 Olea europaea HOM05D006287 ORTHO05D000003 6.1e-09 67.4 45 62.2
AUR62021186 Chenopodium quinoa HOM05D006287 ORTHO05D008192 8.0e-09 67.0 152 28.9
AUR62021185 Chenopodium quinoa HOM05D006287 ORTHO05D008192 1.0e-08 66.6 259 27.4
MBI01_g07128_MAGBIO Magnolia biondii HOM05D006287 ORTHO05D008192 6.7e-08 63.9 123 33.3
SEGI_12196 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 8.8e-08 63.5 168 25.6
RcHm_v2.0_Chr6g0264781 Rosa chinensis HOM05D006287 ORTHO05D008192 4.4e-07 61.2 112 33.0
RcHm_v2.0_Chr4g0410561 Rosa chinensis HOM05D006287 ORTHO05D008192 5.7e-07 60.8 119 33.6
ECA233G4604 Erigeron canadensis HOM05D005914 ORTHO05D007361 1.3e-06 59.7 47 48.9
Gohir.A10G099700 Gossypium hirsutum HOM05D006287 ORTHO05D008192 1.3e-06 59.7 48 50.0
Gohir.D10G088500 Gossypium hirsutum HOM05D006287 ORTHO05D008192 2.2e-06 58.9 47 51.1
FAN08G1130 Fragaria x ananassa HOM05D006287 ORTHO05D008192 2.8e-06 58.5 48 50.0


User provided reference genes

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