Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.11716 Avicennia marina HOM05D006435 ORTHO05D008262 8.6e-154 547.0 279 100.0
SalBow4G2069 Salvia bowleyana HOM05D006435 ORTHO05D008262 1.3e-112 410.2 283 79.5
SGA_v2.0_scaffold280G46829 Striga asiatica HOM05D006435 ORTHO05D008262 2.1e-112 409.5 291 74.6
Migut.A00245 Erythranthe guttata HOM05D006435 ORTHO05D008262 1.3e-109 400.2 277 78.7
Oeu063249.1 Olea europaea HOM05D006435 ORTHO05D008262 5.5e-100 368.2 267 73.4
CSS0040195 Camellia sinensis var. sinensis HOM05D006435 ORTHO05D008262 2.5e-97 359.4 267 73.8
TWI32G0701 Tripterygium wilfordii HOM05D006435 ORTHO05D008262 6.9e-95 351.3 212 82.1
GSVIVG01035670001 Vitis vinifera HOM05D006435 ORTHO05D008262 1.5e-94 350.1 266 68.0
vmacro11085 Vaccinium macrocarpon HOM05D006435 ORTHO05D008262 2.6e-94 349.4 220 80.9
Cc00_g17690 Coffea canephora HOM05D006435 ORTHO05D008262 1.3e-93 347.1 232 77.6
QL12p026394 Quercus lobata HOM05D006435 ORTHO05D008262 2.2e-93 346.3 228 76.8
Solyc08g068270.3 Solanum lycopersicum HOM05D006435 ORTHO05D008262 2.2e-93 346.3 259 72.6
PGSC0003DMG400014515 Solanum tuberosum HOM05D006435 ORTHO05D008262 3.8e-93 345.5 260 71.5
Hma1.2p1_0140F.1_g063520 Hydrangea macrophylla HOM05D006435 ORTHO05D008262 8.4e-93 344.4 272 69.9
Sopen08g022120 Solanum pennellii HOM05D006435 ORTHO05D008262 8.4e-93 344.4 259 71.8
Rhsim02G0182200 Rhododendron simsii HOM05D006435 ORTHO05D008262 1.4e-92 343.6 250 73.6
CiPaw.07G207200 Carya illinoinensis HOM05D006435 ORTHO05D008262 5.5e-92 341.7 288 64.2
Potri.018G037300 Populus trichocarpa HOM05D006435 ORTHO05D008262 5.5e-92 341.7 256 68.8
Actinidia31221 Actinidia chinensis HOM05D006435 ORTHO05D008262 7.1e-92 341.3 263 68.1
arahy.Tifrunner.gnm1.ann1.W16L9Q Arachis hypogaea HOM05D006435 ORTHO05D008262 7.1e-92 341.3 272 67.3
MELO3C003582.2 Cucumis melo HOM05D006435 ORTHO05D008262 7.1e-92 341.3 212 78.3
arahy.Tifrunner.gnm1.ann1.463B8J Arachis hypogaea HOM05D006435 ORTHO05D008262 1.2e-91 340.5 265 67.5
CANSAT80G2129 Cannabis sativa HOM05D006435 ORTHO05D008262 1.2e-91 340.5 208 80.3
Ciclev10009372m.g Citrus clementina HOM05D006435 ORTHO05D008262 4.6e-91 338.6 217 77.0
CsaV3_3G047410 Cucumis sativus L. HOM05D006435 ORTHO05D008262 4.6e-91 338.6 205 81.0
Sp2g21890 Schrenkiella parvula HOM05D006435 ORTHO05D008262 4.6e-91 338.6 208 80.3
Lj8C603T5 Lonicera japonica HOM05D006435 ORTHO05D008262 1.0e-90 337.4 266 69.9
CAN.G797.1 Capsicum annuum HOM05D006435 ORTHO05D008262 3.0e-90 335.9 256 71.9
Sed0025420 Sechium edule HOM05D006435 ORTHO05D008262 3.0e-90 335.9 205 78.5
Lalb_Chr22g0360991 Lupinus albus HOM05D006435 ORTHO05D008262 3.9e-90 335.5 215 77.7
Medtr1g008300 Medicago truncatula HOM05D006435 ORTHO05D008262 3.9e-90 335.5 225 75.1
Nn2g11721 Nelumbo nucifera HOM05D006435 ORTHO05D008262 3.9e-90 335.5 260 68.8
Manes.03G062800 Manihot esculenta HOM05D006435 ORTHO05D008262 1.1e-89 334.0 211 77.7
Dinv30253 Davidia involucrata HOM05D006435 ORTHO05D004219 1.5e-89 333.6 279 67.4
BcaC03g17897 Brassica carinata HOM05D006435 ORTHO05D008262 1.9e-89 333.2 208 78.8
C02p59390 Brassica napus HOM05D006435 ORTHO05D008262 1.9e-89 333.2 208 78.8
BraA02t08928Z Brassica rapa HOM05D006435 ORTHO05D008262 1.9e-89 333.2 208 78.8
DCAR_007705 Daucus carota HOM05D006435 ORTHO05D008262 1.9e-89 333.2 206 79.1
VMungo0647G0379 Vigna mungo HOM05D006435 ORTHO05D008262 1.9e-89 333.2 246 70.7
MBI01_g28042_MAGBIO Magnolia biondii HOM05D006435 ORTHO05D008262 2.5e-89 332.8 213 77.0
Hund19545 Selenicereus undatus HOM05D006435 ORTHO05D008262 2.5e-89 332.8 224 73.2
THA.LOC104815054 Tarenaya hassleriana HOM05D006435 ORTHO05D008262 3.3e-89 332.4 248 70.2
BcaB07g29986 Brassica carinata HOM05D006435 ORTHO05D008262 4.3e-89 332.0 208 78.8
Lj1g0009240 Lotus japonicus HOM05D006435 ORTHO05D008262 4.3e-89 332.0 248 69.4
Atru.chr7.2160 Acer truncatum HOM05D006435 ORTHO05D008262 7.4e-89 331.3 281 65.1
AUR62009330 Chenopodium quinoa HOM05D006435 ORTHO05D008262 7.4e-89 331.3 206 79.1
Glyma.17G190400 Glycine max HOM05D006435 ORTHO05D008262 9.6e-89 330.9 265 67.2
unitig_0.g2807 Utricularia gibba HOM05D006435 ORTHO05D008262 9.6e-89 330.9 234 72.2
Lsat_1_v5_gn_6_10980 Lactuca sativa HOM05D006435 ORTHO05D008262 1.6e-88 330.1 286 65.4
AL6G37530 Arabidopsis lyrata HOM05D006435 ORTHO05D008262 2.1e-88 329.7 271 64.6
Carub.0006s2947 Capsella rubella HOM05D006435 ORTHO05D008262 2.1e-88 329.7 208 77.9
Aa31LG11G4730 Aethionema arabicum HOM05D006435 ORTHO05D008262 2.8e-88 329.3 287 64.1
Thecc.09G039800 Theobroma cacao HOM05D006435 ORTHO05D008262 2.8e-88 329.3 217 75.1
AUR62023016 Chenopodium quinoa HOM05D006435 ORTHO05D008262 3.7e-88 328.9 206 78.6
Aqoxy7G01634 Aquilegia oxysepala HOM05D006435 ORTHO05D008262 4.8e-88 328.6 234 73.5
CARHR187680 Cardamine hirsuta HOM05D006435 ORTHO05D008262 4.8e-88 328.6 270 64.1
Duzib187G0700 Durio zibethinus HOM05D006435 ORTHO05D008262 6.3e-88 328.2 212 75.9
Eucgr.C01580 Eucalyptus grandis HOM05D006435 ORTHO05D008262 8.2e-88 327.8 267 66.7
Ah.16g105260 Amaranthus hybridus HOM05D006435 ORTHO05D008262 1.1e-87 327.4 217 75.6
Thhalv10004692m.g Eutrema salsugineum HOM05D006435 ORTHO05D008262 1.1e-87 327.4 208 76.9
Cpa.g.sc78.80 Carica papaya HOM05D006435 ORTHO05D008262 1.8e-87 326.6 265 64.2
Nitab4.5_0003338g0080 Nicotiana tabacum HOM05D006435 ORTHO05D008262 2.4e-87 326.2 195 82.6
HanXRQChr02g0048091 Helianthus annuus HOM05D006435 ORTHO05D008262 4.1e-87 325.5 283 65.0
Gohir.D05G050300 Gossypium hirsutum HOM05D006435 ORTHO05D008262 1.2e-86 323.9 212 75.9
HPP92_001799 Vanilla planifolia HOM05D006435 ORTHO05D008262 1.5e-86 323.6 213 76.1
Cfa013344 Carpinus fangiana HOM05D006435 ORTHO05D008262 4.5e-86 322.0 269 65.8
Gohir.A05G048400 Gossypium hirsutum HOM05D006435 ORTHO05D008262 4.5e-86 322.0 212 75.5
TPR.G12017 Trifolium pratense HOM05D006435 ORTHO05D008262 5.9e-86 321.6 264 66.7
EL10Ac2g04073 Beta vulgaris HOM05D006435 ORTHO05D008262 7.6e-86 321.2 206 76.2
ATR0315G035 Amborella trichopoda HOM05D006435 ORTHO05D008262 1.7e-85 320.1 218 75.2
CDE05G2477 Ceratophyllum demersum HOM05D006435 ORTHO05D008262 2.2e-85 319.7 235 69.4
Gorai.009G051800 Gossypium raimondii HOM05D006435 ORTHO05D008262 3.8e-85 318.9 208 76.4
Phvul.001G078600 Phaseolus vulgaris HOM05D006435 ORTHO05D008262 3.2e-84 315.8 199 77.4
MD15G1097700 Malus domestica HOM05D006435 ORTHO05D008262 7.2e-84 314.7 245 67.8
Prupe.1G452600 Prunus persica HOM05D006435 ORTHO05D008262 7.2e-84 314.7 281 61.6
PSO782G5114 Papaver somniferum HOM05D006435 ORTHO05D008262 1.2e-83 313.9 214 75.7
SEGI_13627 Sequoiadendron giganteum HOM05D006435 ORTHO05D008262 4.6e-83 312.0 242 66.5
PSO832G3386 Papaver somniferum HOM05D006435 ORTHO05D008262 6.1e-83 311.6 214 75.2
ECA233G4084 Erigeron canadensis HOM05D006435 ORTHO05D008262 1.3e-82 310.5 206 77.7
RcHm_v2.0_Chr6g0305751 Rosa chinensis HOM05D006435 ORTHO05D008262 2.3e-82 309.7 206 73.8
FvH4_2g36120 Fragaria vesca HOM05D006435 ORTHO05D008262 6.7e-82 308.1 240 66.7
Sc09g0009090 Simmondsia chinensis HOM05D006435 ORTHO05D008262 6.7e-82 308.1 207 72.5
FAN27G2865 Fragaria x ananassa HOM05D006435 ORTHO05D008262 1.1e-81 307.4 202 74.3
VMungo1215G1854 Vigna mungo HOM05D006435 ORTHO05D008262 1.1e-81 307.4 197 77.2
FAN20G0337 Fragaria x ananassa HOM05D006435 ORTHO05D008262 1.2e-75 287.3 211 70.1
Zm00001eb350490 Zea mays HOM05D006435 ORTHO05D008262 2.1e-75 286.6 218 65.1
Os05g0220600 Oryza sativa ssp. japonica HOM05D006435 ORTHO05D008262 2.7e-75 286.2 238 63.0
AagrBONN_evm.TU.Sc2ySwM_117.700 Anthoceros agrestis HOM05D006435 ORTHO05D008262 5.1e-74 282.0 198 72.2
COL.COLO4_18696 Corchorus olitorius HOM05D006435 ORTHO05D008262 2.6e-73 279.6 217 67.7
Mapoly0109s0030 Marchantia polymorpha HOM05D006435 ORTHO05D008262 9.7e-73 277.7 214 66.4
Haze_21849 Corylus avellana HOM05D006435 ORTHO05D008262 1.4e-71 273.9 164 82.3
Pp3c15_3110 Physcomitrium patens HOM05D006435 ORTHO05D008262 1.8e-71 273.5 239 61.9
TAR624G0864 Trochodendron aralioides HOM05D006435 ORTHO05D008262 3.4e-70 269.2 154 85.7
PGR031G0325 Punica granatum HOM05D006435 ORTHO05D008262 2.5e-68 263.1 246 59.8
Psat6g034280 Pisum sativum HOM05D006435 ORTHO05D008262 4.2e-68 262.3 196 69.9
SMO116G0425 Selaginella moellendorffii HOM05D006435 ORTHO05D008262 4.2e-68 262.3 250 55.2
Eucgr.L02138 Eucalyptus grandis HOM05D006435 ORTHO05D008262 1.6e-67 260.4 267 58.1
Solyc10g012245.1 Solanum lycopersicum HOM05D006435 ORTHO05D008262 5.2e-66 255.4 205 66.8
AL6G37520 Arabidopsis lyrata HOM05D006435 ORTHO05D008262 4.1e-63 245.7 248 56.0
AT5G25640 Arabidopsis thaliana HOM05D006435 ORTHO05D008262 2.2e-61 240.0 251 53.8
Carub.0006s2351 Capsella rubella HOM05D006435 ORTHO05D008262 1.5e-60 237.3 281 49.8
Nitab4.5_0000052g0140 Nicotiana tabacum HOM05D006435 ORTHO05D008262 2.1e-59 233.4 306 52.6
Ciclev10010273m.g Citrus clementina HOM05D006435 ORTHO05D008262 1.2e-54 217.6 155 69.7
ClCG11G014010 Citrullus lanatus HOM05D006435 ORTHO05D008262 5.0e-53 212.2 125 80.8
Ca_12811_v3 Cicer arietinum L. HOM05D006435 ORTHO05D008262 2.7e-51 206.5 135 77.8
Peaxi162Scf00523g00529 Petunia axillaris HOM05D006435 ORTHO05D008262 3.6e-51 206.1 132 81.8
MBI01_g28043_MAGBIO Magnolia biondii HOM05D006435 ORTHO05D008262 5.7e-49 198.7 208 55.3
PSO782G5630 Papaver somniferum HOM05D006435 ORTHO05D008262 1.5e-44 184.1 188 49.5
Glyma.14G141900 Glycine max HOM05D006435 ORTHO05D008262 3.2e-44 183.0 102 88.2
Sabra18G0038100 Salix brachista HOM05D006435 ORTHO05D008262 2.6e-41 173.3 110 76.4
PRCOL_00005434 Prasinoderma coloniale HOM05D006435 ORTHO05D008262 9.8e-41 171.4 182 47.8
Cre16.g664801 Chlamydomonas reinhardtii HOM05D006435 ORTHO05D008262 1.5e-36 157.5 192 44.3
PSO782G2728 Papaver somniferum HOM05D006435 ORTHO05D008262 6.8e-34 148.7 188 44.1
Peaxi162Scf00523g00528 Petunia axillaris HOM05D006435 ORTHO05D008262 3.5e-30 136.3 131 63.4
A02p39610 Brassica napus HOM05D006435 ORTHO05D008262 5.6e-28 129.0 85 70.6
Solyc10g012295.1 Solanum lycopersicum HOM05D006435 ORTHO05D008262 8.0e-27 125.2 91 71.4
FAN15G2703 Fragaria x ananassa HOM05D006435 ORTHO05D008262 6.8e-26 122.1 78 67.9
PSO832G3154 Papaver somniferum HOM05D006435 ORTHO05D008262 2.0e-25 120.6 201 38.8
MD08G1118500 Malus domestica HOM05D006435 ORTHO05D008262 7.3e-20 102.1 72 69.4
MBI01_g46977_MAGBIO Magnolia biondii HOM05D006435 ORTHO05D008262 1.7e-16 90.9 76 65.8
Cre12.g546200 Chlamydomonas reinhardtii HOM05D006435 ORTHO05D146483 8.4e-08 62.0 177 29.9
Cre11.g467648 Chlamydomonas reinhardtii HOM05D006435 ORTHO05D143948 1.4e-07 61.2 98 31.6
Lalb_Chr22g0350911 Lupinus albus HOM05D000659 ORTHO05D000505 3.2e-07 60.1 146 32.2
Lalb_Chr14g0373771 Lupinus albus HOM05D000659 ORTHO05D000505 1.2e-06 58.2 162 31.5
Glyma.14G142000 Glycine max HOM05D006435 ORTHO05D008262 1.6e-06 57.8 67 52.2
Solyc03g026080.3 Solanum lycopersicum HOM05D000659 ORTHO05D000505 1.6e-06 57.8 163 29.4
Sopen03g004920 Solanum pennellii HOM05D000659 ORTHO05D000505 1.6e-06 57.8 163 29.4
Ca_12801_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 2.1e-06 57.4 96 40.6
Lalb_Chr19g0130981 Lupinus albus HOM05D000659 ORTHO05D000505 2.1e-06 57.4 154 28.6
Lalb_Chr03g0034381 Lupinus albus HOM05D000659 ORTHO05D000505 2.7e-06 57.0 154 29.2
ECA232G2175 Erigeron canadensis HOM05D000659 ORTHO05D000505 3.5e-06 56.6 165 29.1
SalBow4G2481 Salvia bowleyana HOM05D000659 ORTHO05D000505 3.5e-06 56.6 163 28.8
Zm00001eb164560 Zea mays HOM05D000659 ORTHO05D000505 3.5e-06 56.6 160 28.8
Cc06_g02550 Coffea canephora HOM05D000659 ORTHO05D000505 6.0e-06 55.8 148 31.8
PGSC0003DMG400014321 Solanum tuberosum HOM05D000659 ORTHO05D000505 6.0e-06 55.8 163 29.4
vmacro09850 Vaccinium macrocarpon HOM05D000659 ORTHO05D000505 6.0e-06 55.8 157 30.6
vmacro20163 Vaccinium macrocarpon HOM05D000659 ORTHO05D000505 6.0e-06 55.8 157 31.2
AUR62009562 Chenopodium quinoa HOM05D000659 ORTHO05D000505 7.8e-06 55.5 154 28.6


User provided reference genes

Program Settings